Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00086 ATGGTTTCCAGGTCGTATTCCAATTTACTCGAACTTGCCACCGGAGAATCGCCGTCTTTCGGCCGTATAAACCGCCAAATCCCCCGGATTGTGACCGTCGCCGGCTTAATCTCCGACGTCGATGACGACCCATCTGAGAGCGTCTCCTCGGAGCCGTCCTCCTCCTCCACCTCTCGCGACCGGATTATCATCGTCGCCAATGAGCTTCCCATCAGAGCTCACCGGATATCCGGCAACGGCGGAGCCACCACCAACTGGAATTTCAGCTGGGATGAAAATTCCCTTCTCCTCCAGCTGAAAGATGGGCTGGGAGATGATGATTTTGAAGTGTTTTATGTGGGTTGTCTTAAGGAAGATATTCACCCAAATGAACAAGATGAAGTCTCTCAAATACTTCTAGAGACTTTCAAATGCGTGCCAACATTTCTCACTCAAGATCTTTACACAAGGTACTACCATGGCTTCTGCAAGCAGCAGCTATGGCCTCTGTTTCATTACATGTTGCCTCTTTCGCCTGACCTCGGCGGTCGATTCAATCGACCACTATGGCAGGCTTATGTTAAAGTTAATAAAATCTTTGCTGATAAGATCATGGAAGTGATCAATCCTGAAGACGATTTTGTTTGGATTCATGATTATCATCTTATGGTACTGCCTACTTTTTTGAGGAAGAGATTCAATAGGGTTAAGCTTGGATTCTTTTTGCATAGCCCTTTCCCATCGTCGGAGATATATAGAACACTTCCGATCCGGGAAGAGCTCTTACGAGCACTTCTGAATTCAGATTTGATAGGGTTTCATACTTTTGATTATGCTAGGCATTTTCTTTCTTGTTGTAGTCGAATGTTCGGTCTAACGTATGAGTCGAAACGGGGTTATATCGGGATAGAGTATTATGGTCGAACTATTAGTATTAAGATCCTTCCTGTTGGGATTCATATGGGTCAGCTTCAATCTGTTTTGAGTCTTGGGAAGACTGAGGAGAAGGTTAGTGAGGTTATTAAGCAGTTTCGTGATCGGGATCGGATCATGTTGCTCGGTGTGGACGATATGGACATATTTAAGGGGATAAGTTTGAAGCTTTTGGCTATGGAGCAGTTGTTGATGACGCACCCTGAGTGGGAGGGGAAGGTTGTGTTGGTGCAGATTGCCAACCCTGCAAGAGGTAGAGGGAAAGATGTTAAGGAAGTTCGGGACGAGATGAAGGCAACTGTTAGGCGGATAAACAATATGTTTGGGAGACCTGGGTACGAGCCAATTGTGTTGATTGAGGAACCACTCAAATTCTACGAGAGAATTGCATATTATACGGTTGCTGAATGTTGTTTGGTCACAGCGGTTAGGGACGGTATGAATCTCATTCCATACGAGTACATTGTCAGTCGTCAAGGGAACGATAAGTTGGATAAACTCTTGGGCTGGGAATCATCAGCTCCGAAGAAGAGTATGTTGGTTCTATCCGAATTCATCGGGTGCTCTCCATCCTTAAGTGGAGCGATTCGAGTTAATCCCTGGAATATCGATGCTGTAGCTGATGCCATGGAATGTGCGTTGGAGATGGCAGATGCAGAGAAGCAGCTCCGCCATGAGAAGCATTTTAGATATGTGAGCACACACGATGTCGGGTATTGGGCTCGGAGTTTCCTACAAGATTTGGAGAGGACTTGTAGGGATCATGTGAGGCAGAGATGTTGGGGTATCGGGTTCGGTTTAAGTTTTAGAGTTGTGGCCCTTGATCTGAACTTCAGGAAGCTCGCTATGGAACACATAATTTCAACTTATAAGAGGACGAAGTCTCGGGCTATTCTTTTGGACTACGATGGTACGTTAATGCCTCAAGCTTCAATTGACAAGGGCCCTACTTCAAAATGCCTCGAAACTCTTGATACCTTGTGTCGGGATAAGAAAAATACGGTGTTCATTGTGAGTGCAAAAACTCGAAAAACACTTGCTGAATGGTTTGCCCCTTGCAAAAAACTCAGCATTGCTGCCGAGCACGGATACTTTATTAGGCTAAAGCAGGATGAGGAATGGGAAACCAGTTTGCCAGTTGCAGATTGCTGTTGGAAGCAGATTGTGCAGCCAGTGATGAAACTCTACACTGAAACGACCGATGGATCGACAATCGAAGATCGAGAAACCGCACTCGGATGGTGTTATGAAGATGCAGATCCAGATTTCGGTTCGTGTCAAGCTAAGGAGCTCCTGGATCATCTCGAAAGCGTACTAGCCAACGAGCCAGTTACCGTAAAAAGTGGTCAAAGCATTGTGGAAGTTAAACCACAGGGCGTCAGCAAGGGTCTCGTGGCGAAACGACTACTCTCTGCAATGCAAGAGAAGGGGACCCCAGCAGATTTTGTTCTCTGCATTGGCGACGACCGATCGGATGAAGACATGTTCAAGGTGATCTCAAGTTCCATGGCAGGTCCATCGATTGCACCCCGAGCTGAAATTTTTGCTTGTACAGTAGGGAAGAAACCGAGCAAAGCCAAGTATTACCTCGACGATCCATCGGAAATTGCTAGGCTGATGCATGGTTTGGCTTCGGTGTCGAGGCCAAACGTTCCGCCTTATCCATCCCAAAGCTGA 2589 46.35 MVSRSYSNLLELATGESPSFGRINRQIPRIVTVAGLISDVDDDPSESVSSEPSSSSTSRDRIIIVANELPIRAHRISGNGGATTNWNFSWDENSLLLQLKDGLGDDDFEVFYVGCLKEDIHPNEQDEVSQILLETFKCVPTFLTQDLYTRYYHGFCKQQLWPLFHYMLPLSPDLGGRFNRPLWQAYVKVNKIFADKIMEVINPEDDFVWIHDYHLMVLPTFLRKRFNRVKLGFFLHSPFPSSEIYRTLPIREELLRALLNSDLIGFHTFDYARHFLSCCSRMFGLTYESKRGYIGIEYYGRTISIKILPVGIHMGQLQSVLSLGKTEEKVSEVIKQFRDRDRIMLLGVDDMDIFKGISLKLLAMEQLLMTHPEWEGKVVLVQIANPARGRGKDVKEVRDEMKATVRRINNMFGRPGYEPIVLIEEPLKFYERIAYYTVAECCLVTAVRDGMNLIPYEYIVSRQGNDKLDKLLGWESSAPKKSMLVLSEFIGCSPSLSGAIRVNPWNIDAVADAMECALEMADAEKQLRHEKHFRYVSTHDVGYWARSFLQDLERTCRDHVRQRCWGIGFGLSFRVVALDLNFRKLAMEHIISTYKRTKSRAILLDYDGTLMPQASIDKGPTSKCLETLDTLCRDKKNTVFIVSAKTRKTLAEWFAPCKKLSIAAEHGYFIRLKQDEEWETSLPVADCCWKQIVQPVMKLYTETTDGSTIEDRETALGWCYEDADPDFGSCQAKELLDHLESVLANEPVTVKSGQSIVEVKPQGVSKGLVAKRLLSAMQEKGTPADFVLCIGDDRSDEDMFKVISSSMAGPSIAPRAEIFACTVGKKPSKAKYYLDDPSEIARLMHGLASVSRPNVPPYPSQS 862
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 429400 433173 + CmaCh04G000860.1 Cma04g00086 291167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00086 862 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 602 803 IPR006379 -
Cma04g00086 862 Gene3D Glycogen Phosphorylase B; 53 318 - -
Cma04g00086 862 Gene3D - 729 855 IPR023214 -
Cma04g00086 862 Gene3D - 599 716 IPR023214 -
Cma04g00086 862 Pfam Glycosyltransferase family 20 61 553 IPR001830 GO:0003824|GO:0005992
Cma04g00086 862 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 6 1 852 - -
Cma04g00086 862 Pfam Trehalose-phosphatase 603 838 IPR003337 GO:0003824|GO:0005992
Cma04g00086 862 SUPERFAMILY HAD-like 600 845 IPR036412 -
Cma04g00086 862 CDD GT20_TPS 61 553 IPR001830 GO:0003824|GO:0005992
Cma04g00086 862 TIGRFAM T6PP: trehalose-phosphatase 598 847 IPR003337 GO:0003824|GO:0005992
Cma04g00086 862 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 60 556 - -
Cma04g00086 862 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 852 IPR001830 GO:0003824|GO:0005992
Cma04g00086 862 Gene3D Glycogen Phosphorylase B; 319 537 - -
Cma04g00086 862 CDD HAD_TPP 601 839 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01042 Cma04g00086 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma03g01336 Cma-Chr3:8580070 Cma04g00086 Cma-Chr4:429400 0 dispersed
Cma04g00086 Cma-Chr4:429400 Cma19g01006 Cma-Chr19:8674708 0 dispersed
Cma18g00443 Cma-Chr18:2444622 Cma04g00086 Cma-Chr4:429400 3.27E-140 dispersed
Cma06g00646 Cma-Chr6:3189733 Cma04g00086 Cma-Chr4:429400 0 transposed
Cma16g01174 Cma-Chr16:8986427 Cma04g00086 Cma-Chr4:429400 0 transposed
Cma04g00086 Cma-Chr4:429400 Cma04g01042 Cma-Chr4:5399688 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00086 K16055 - vvi:100252552 1454.11