Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00088 ATGGGCCTGTCAACTGCTACTTCTGCCGTTTCCGAGGCCATTAAACTCTGCGTATTTGATTCAAGGAGAGGACAACAGGAGGGTCAAGAGCTGGATAAGATATTGTTTTTCTATCCAGCCGATTTACCCTTTACAAAACAATTGTATATTATTGGGCTCAGTGAAGGACTCATCACATTTACAAGAACATTCTCCCCAGAGGCAGCTTGTGAGGTCATTGAAGCAGAGAAGCACTCTCATGTATTTTTTGAGGCGGAGCCAGATATATGGATGGTTTTGGTAGTGGAGAAAAACAAGGAGGTACTAGCAACTTGGCGGATGGATGCATTGCAGAAGCTTCTGAAGGAAATTCACTCTCTTTTTCTAATGTTTCACGGTCCTATAAGGTTGTTACTTGAGAAAGAACCCACTGGAGAAGTTTCCAGATCACATTTGTATTCCTTCATCATGGATTATTTGAGTGCATGTCAAAAGCGGTCTCCATTGGATAGGTGCTGCTGTGATTTTCTTGTTGGGAAGAAATTGCAGTTACCATCATTTGTTGACTGTTTAAAGGAACGTGGAACTGTACATATGCTGACCATAGGGCGGGATGCTGCCATTGAAGTTCAGGCACTTGTTAGAACACTTGATTCTTGCATTGAAAACGCATCATGCCGCTCTCTGATTTTATTTCAGGACTTACTGGTGTCTACATCGCTTTCTCCTGAGGATACTACAAATTTATTTTCATATGCTGTTCTGAGGTTAACTCCAAGTGTCTTATCTTCTAGCGCAAGTTCTTGGTCCTATTTACTTAGAGGAAATACTGTTTCTCATGTCACCCAACATGGAGGAAATGTTGGTAATCGTGTCATACGACCCTTGCAGCATGGAAAATGGTCAAAAGGAAAGAATGGTTTTCTAGAAACTGATATTTGGGGTATGGAGGCAAGTGGCCGGGTCAATTCTACCCCAAAAATCTGGCCTTTTCAAACAGAGAAGCAAATGTACTTGTATGTACATCATCATAAAAGTCTGACACTGATTCTTCTTGTTCCTGCTTCATCAATACCTAATGGGGAACAAGGCATTTCAATCATCAGGCAGTACTTTCTTGAAAATGCTTCCCTGAAGATCATGACAGTTGAAGAAAAATTGTCAAAAGGCTGGGGTGGGGAAAATGCTTATCATGTTGGTGGGTATCGTTATTTACTGATAGATGGTGATAGACAAATATCCAGGGCTTCACCTCCAGGAAAAGTCACCACCCTCACAAAGGAATCTTTACTTGCCATGAGCAAACTCAGAGAAAAGATTGATCTGGAGAAGAGTCGAGCAAAACAGGATGGTGTTGTTGAGGAAAAGGAGGTGGAAGTAACCATTAGAGCAAAGAACAATGCATGGGTTATTTCTCGAATCACAAGACGGAAAGAGCTTTATATGGTTCTGGAGAAAGCCAACGAAACTGTACTCTATGCCTCTGATATGGTGGAGAAATTCAGCAACAGGTACTGCAATGGAGCATTCTCCTTGGATTAG 1521 41.68 MGLSTATSAVSEAIKLCVFDSRRGQQEGQELDKILFFYPADLPFTKQLYIIGLSEGLITFTRTFSPEAACEVIEAEKHSHVFFEAEPDIWMVLVVEKNKEVLATWRMDALQKLLKEIHSLFLMFHGPIRLLLEKEPTGEVSRSHLYSFIMDYLSACQKRSPLDRCCCDFLVGKKLQLPSFVDCLKERGTVHMLTIGRDAAIEVQALVRTLDSCIENASCRSLILFQDLLVSTSLSPEDTTNLFSYAVLRLTPSVLSSSASSWSYLLRGNTVSHVTQHGGNVGNRVIRPLQHGKWSKGKNGFLETDIWGMEASGRVNSTPKIWPFQTEKQMYLYVHHHKSLTLILLVPASSIPNGEQGISIIRQYFLENASLKIMTVEEKLSKGWGGENAYHVGGYRYLLIDGDRQISRASPPGKVTTLTKESLLAMSKLREKIDLEKSRAKQDGVVEEKEVEVTIRAKNNAWVISRITRRKELYMVLEKANETVLYASDMVEKFSNRYCNGAFSLD 506
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 439365 444623 - CmaCh04G000880.1 Cma04g00088 291169

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00088 506 Pfam First Longin domain of INTU, CCZ1 and HPS4 17 126 IPR043987 GO:0016192
Cma04g00088 506 PANTHER UNCHARACTERIZED 7 506 IPR013176 GO:0016192|GO:0035658
Cma04g00088 506 PANTHER VACUOLAR FUSION PROTEIN CCZ1 HOMOLOG B 7 506 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00088 - - - csv:101203882 866.3
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01045 Cma04g00088 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00088 Cma-Chr4:439365 Cma04g01045 Cma-Chr4:5411304 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g523 . . . . . Bpe10g01007 . Bma15g00022 Cmo04g01115 . Cma04g01045 Cma04g00088 Car04g00975 . . . . Bhi07g00420 . . Lac13g1294 . . . Cla07g00517 Cam07g0553 Cec07g0606 Cco07g0578 Clacu07g0556 Cmu07g0594 Cre07g0926 Cone13ag0727 Cone19ag0730 . . Lsi04g00996 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005897 1 2 1 1 1 1 1 2 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 2 1 1 38
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00088 Cma_Chr04 FPKM 2.535374 2.124661 2.990487 2.393703 8.914699 8.042965 7.927129 5.239411 5.886352 5.551949