Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00090 ATGGGTAAAACAATTCAGCTTTATGGATTCCCTTCTGGTGTATTACAAGAATCGGTTAAGGCGTTTGTAGAGAGATTTACAGGCGAAGGAAGTATAGATGCCATAAATGTAAAACGTTCAAGGGGAAGAGGAAAGCGATTGTATGCAATCATCCAGTTTATTGACGATGTAGGTGCTAAGTTAATTATATCTTTGGCTAATGCAAGCCTCCGCTATGGAACTTCTTCTTTGAAGGCAAGGGAGTGGAAACAGGATATTCTACAAGATCCACTAGTCTTTGAATACAATTTCAAAGGCTTAGAACTCCATCTTGGTTGTCAGATATCAAGGGAGGAATTTTTTGTGTTATGGACAGAGTCAAATGTGTCTGTGAATTTCGAGTTTGAGCGGCGTGATCTTAAGTTTTTCATATCCCATCCTCTTGTTGACTACATGCTCGTATTGCGATATGAGAACATTTGGCAAGTTGAGCTACACAAGCCACCAGGCCAATCTATAGATTATCTTCTGATTCAGTTAGTTGGTGCTCCACGGATTTATGAGAGAGATACAAAGCTTTTTGGACATATTTCTGAAGACCCCTTCTTGAGCTTTTCTAAGGAAATGGACACCGAATGGTTTCGAGCAACCGATTTCACTCCATCATGCTGTATTGGACAATCTGGAGCTTTATGCTTGGAGATTCCTTACGGTCGCCAGCTCCCTAATTTTCATGATAAATTTGCTTACTTCAAAGAAATAAAGGGTAAATTTACACTGGCCACCGGTTCTACTTATTCGTCCAATGTAAACTTGGTACCTGTAGTTAGACCTCCTCTGAGCATCCACTTGCCATATGCCATTTTGTTTAAGATAAACTTGTTGGTACAACAGGGGTGTCTTCCAGGCCCAGCTCTTGATATCAGTTTCTATGAGATGGTTGATCCTCAGATACACAATATTGCCTTCATAGATCGTGCTTTAAGGAAACTTTATGACTTGAAAGAGTGTTGCTATAACCCTTCAAAATGGTTAGGTGAGGAGTACAGGAAGTACTCCAAGTTAACGAATCCGCCGCAGCCACCTAACTTGTCCTTAGATGAAGGGTTAGTCTATGTACACAGGGTTCAAGTGACACCTTGTAGAGTGTACTTTTGTGGTCCAGAGGTTAATGTTTCAAACCGTGTATTGCGTCGTTATCCCGAATATCTTGACAACTTTTTGCGTGTTTCGTTTGTCGACGAGGAATTGGATAGACTGTATTCAACTGAATTGTCTCCACGAGAATCTTCTTCCTTGGGGGATGGAAAGACGAAAATATTTAAAAGAATCCTTTCAGTTCTGAAAGATGGCATTACCATTGGTGATAAGAAGTTCGAGTTTCTTGCGTATTCTTCGAGTCAATTACGGGAAAATGCTGTGTGGATGTTTGCTCCAAGAGATGGGATTACTGCAGCTAAAATAAGGAAATGGATGGGAGATTTTCATAGTATAAGAAATGTAGCCAAGTATGCTGCTAGACTAGGCCAATCCTTTGGTTCATCCACAGAAACTGCAAGTGTCAGTCGACGCGAAGTTGAGGTTATTCCTGATATCGAGGTCGAATCAGATGCTGGTATCAATTATGTCTTCTCTGATGGGATTGGGAAAATATCAGCTAGTTTTGCTAGAGAAGTGGCTAGAAAATGCCGCATCAGGCATACACCATCTGCTTTTCAGATTCGTTATGCTGGTTTTAAAGGTGTTATTTCGGTTGATCCAACCTCATTCGTAAAATTATCGCTCAGGAACAGCATGCTTAAGTATGAGTCGACCGACATGAAGCTCGATGTCTTATCTTGGAGTAGATATCATCCTTGTTATCTTAATCGTCAGTTGATTACTCTTTTGTCGACACTTGGAGTTCAGGATGATATCTTTGAGAGTAAACAAAAGGAATTGATAGATCAATTGGACACCATTTTTATGAATCCATTGAAGGCTCAGCAGGCCCTTGAGCTAATGTCTCCAGGAGAGAATACCAACATTCTGAAGGAAATAATCTCGTGCGGTTACCGACCTGATTCCGAACCTTTCTTATATATGATGTTGCATACGTTCCGTGAATCGAAGTTGTTAGAATTGCGGAGAAAGTCGAGGATCTTTATCCCAAATGGAAGAGCAATGATGGGATGTCTTGATGAAACTGGAAACTTAGAATATGGAGAGGTATTTGTGCAGTGTTCTGCTCACCAGCAGCTGCATAATGATCATATTATCTTTAAAAGAAGCAAATCAAATCAACATTTCATCGTAACGGGAACGGTAGTTGTGGCGAAGAACCCGTGCTTGCACCCAGGTGACGTGCGTGTCTTAACCGCTGTGGATGTACCAGCTCTACATCACATGGTAGATTGTCTGGTTTTTCCACAGAAGGGACCAAGTAATTCTGCTGATATTGGAAACTTTCTTTTCTGTACAAGACCTCATCCGAATGAATGTTCGGGAAGCGATCTCGATGGTGATATATACTTCGTGTGCTGGGATCCTGATTTGATTCCACATCAACAAGTCGAACCAATGGATTATACCCCCGTGCTTAGCAGATTACTAGATCATGATGTCACAATGGAGGAAGTTCAAGAGTATTTTGCAAATTATATGGTCAATGACAGTCTAGGAATCATTGCCAATGCTCATACAGCATTTGCAGATAGTTGGCCAGAGAAAGCAATGAGCGAGCCTTGTATAAAGCTTGCAAAACTATTCTCAATTGCAGTGGACTTCCCCAAAACTGGCGTTCCTGCTTTGATATCTGCTGATCTAAGAGTACAAGTATATCCTGATTTCATGGACAAACCCGACAAACAGCGCTACAAGTCACATAATGTACTGGGGAAGCTGTTCAGAATGTTGGATGACATTGAACCAAGGATTAGCATCAAGTCCGTGAAGTTTACTCGGGAGATAGCTCGGCAAGCTTATGACCCCGACATGGAAGTCGAAGGCTTCGAGGAGTACCTCGACGATGCGCTTTATCACAAGAACAATTACGACATGAGGTTGGGGAATTTGATGAAATATTATAAGATCAAAACTGAGGCAGAGCTAATCAGTGGGGTTAGTTTGACAAAATCATCTTCTTTTACGAAGAAAAATGAAGCGGAATCTATCATCATGGCTGTGAAGTCCCTGCGAAAGGAGGCGAGGGGGTGGTTCAATGAGAATGCTGGCTTGCATTTTGGACATGACAATAATGCGTATGCTAGAGCTTCAGCATGGTATTTTGTTACATATCATTACAGCTACTGGGGCTGGTTTGGGGAGAAGAATGAAAGCCATTTTCTCAGCTTTCCATGGTGTGTTTACGACAAGCTCATCCGTATCAAGAAGCGCAAGATTGGTCCTCGAGCTCGCCATCGGTAA 3384 41.64 MGKTIQLYGFPSGVLQESVKAFVERFTGEGSIDAINVKRSRGRGKRLYAIIQFIDDVGAKLIISLANASLRYGTSSLKAREWKQDILQDPLVFEYNFKGLELHLGCQISREEFFVLWTESNVSVNFEFERRDLKFFISHPLVDYMLVLRYENIWQVELHKPPGQSIDYLLIQLVGAPRIYERDTKLFGHISEDPFLSFSKEMDTEWFRATDFTPSCCIGQSGALCLEIPYGRQLPNFHDKFAYFKEIKGKFTLATGSTYSSNVNLVPVVRPPLSIHLPYAILFKINLLVQQGCLPGPALDISFYEMVDPQIHNIAFIDRALRKLYDLKECCYNPSKWLGEEYRKYSKLTNPPQPPNLSLDEGLVYVHRVQVTPCRVYFCGPEVNVSNRVLRRYPEYLDNFLRVSFVDEELDRLYSTELSPRESSSLGDGKTKIFKRILSVLKDGITIGDKKFEFLAYSSSQLRENAVWMFAPRDGITAAKIRKWMGDFHSIRNVAKYAARLGQSFGSSTETASVSRREVEVIPDIEVESDAGINYVFSDGIGKISASFAREVARKCRIRHTPSAFQIRYAGFKGVISVDPTSFVKLSLRNSMLKYESTDMKLDVLSWSRYHPCYLNRQLITLLSTLGVQDDIFESKQKELIDQLDTIFMNPLKAQQALELMSPGENTNILKEIISCGYRPDSEPFLYMMLHTFRESKLLELRRKSRIFIPNGRAMMGCLDETGNLEYGEVFVQCSAHQQLHNDHIIFKRSKSNQHFIVTGTVVVAKNPCLHPGDVRVLTAVDVPALHHMVDCLVFPQKGPSNSADIGNFLFCTRPHPNECSGSDLDGDIYFVCWDPDLIPHQQVEPMDYTPVLSRLLDHDVTMEEVQEYFANYMVNDSLGIIANAHTAFADSWPEKAMSEPCIKLAKLFSIAVDFPKTGVPALISADLRVQVYPDFMDKPDKQRYKSHNVLGKLFRMLDDIEPRISIKSVKFTREIARQAYDPDMEVEGFEEYLDDALYHKNNYDMRLGNLMKYYKIKTEAELISGVSLTKSSSFTKKNEAESIIMAVKSLRKEARGWFNENAGLHFGHDNNAYARASAWYFVTYHYSYWGWFGEKNESHFLSFPWCVYDKLIRIKKRKIGPRARHR 1127
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 446317 451183 + CmaCh04G000900.1 Cma04g00090 291171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00090 1127 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1119 - -
Cma04g00090 1127 CDD RRM_SF 5 67 - -
Cma04g00090 1127 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1119 IPR007855 GO:0003968
Cma04g00090 1127 Pfam RNA dependent RNA polymerase 371 957 IPR007855 GO:0003968
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00090 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101206946 1884.38
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00090 Cma15g00901 CCT
Cma04g00090 Cma04g02132 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00090 Cma-Chr4:446317 Cma04g02132 Cma-Chr4:14906857 0 dispersed
Cma04g00090 Cma-Chr4:446317 Cma04g00091 Cma-Chr4:451848 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g508 . . . . . . Bma14g01918 . . . . Cma04g00090 . . . . Cpe01g01851 . . . . . . . . . . . . . . . . Cone6ag0354 . . Csa05g01978 . . . . . . . . . . . Cmo04g02226 . Cma04g02132 Cma15g00901 Car04g02070 . . . . . . . . . . . . . . . . . . . Chy09g00813 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002346 1 2 2 1 1 2 0 2 2 2 2 2 2 1 2 2 4 3 2 2 2 3 2 2 2 2 2 5 3 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00090 Cma_Chr04 FPKM 2.511255 2.458935 5.17087 5.691206 8.643627 7.97696 7.991962 19.188663 17.539728 20.37594