Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00091 ATGGGGAAAACGGTTCATATTAGTGGATTTCCTTCACATGCCACGGCAGATTCCGTGAAGAGTTTTCTGGAGCTTCGTACAGGTTTAGGAACTGTCTATGCCATTAAGGTTAGACCACCTAAAAGGGGAGGAAGTAGAGTATATGCTATTGTCCAATTCACTGGTGCTGCACAAGCTGAGTTGATCATTTCCTTAGCTAATCAACGCTTATGGTATGGATCCTCGTATCTTAAGGCTCGAGCGGCTGATGTCGACATTGTACCGAAGCCTAGGACATACGTGCATACCTTGGAAAACTTGACATTGTGCTTTGGCTGTCAGGTCTCCAGTGAAAAGTTTCATGTTCTATGGGAAGGAGATGTTGAGTTGGTGACTTTTGGAGTTGAAATGCGAAAAATGAACTTTCATCTGATTCATAATTTCGTTGAGTACAGGTTTCAGCTTTCCTATGAGAACATTTGGCAGATACAACTCCACCGTCTGCAACATCAGTCTATGAAATGTCTTCTGATTCAGTTATATGGAGCCCCTCGGATATATAAAAAAGTTGCACCATCTAGTGGACAAATCTTTGATGATCCTCTTTTTAACTTCTTTAAAGAAGTACCTGATGATCAATGTGTTAGAACAGCTGATTTTACTCCATCATACTCTATTGGACAATCTTCTTCTTTATGTTTGAAGCTACCTAATGGCCGTCAACTTCCCAACTTTAGGCGACATTTTGCTTATTATGAAGAATTTGAAGATGAATTCAAACTGGTAGATGGAGGCAACGGTTTTTCTTGCTCCGACGATCTTGTTCCTGTGGTCGATTCTCATCCTAATGTTCTTCTGCCATATGAAATAATCTTTAAAGTAAATGTATTGGTTCAAAATGGTTGCATTCCAGGGCCATCACTCGATACTGGTTTCTATCGGTTGGTTGATCCGAGTCGAATAAGAGTTGAGTATGTAGAAAATGCATTAGAAAAACTGTTCCATTTGAAGGAATGCTGCTATGAGCCATCAAGCTTTCTTACTGAACAGTACAAGAAGTATGCAAAGCATCCTTCAAATTCTCCTGCTATAGCCTTGGATGCTGGATTGGTTTATGTCCGTAGGGTTCAAATAACACCTTGTAAGGTGTACTTCTGTGGTCCTGAAGTCAATGTTTCGAACCGGGTGTTGCGCCATTTTTCTCGAGATTTAGATAACTTTCTTCGTGTGTCTTTTGTTGATGAAGAGTGGGATAAAATGCGTTCAACGGATTTATTACCACGGATGGCTTCTTCGATCGAGAATGGTAAAACTGATATCTACAGGAGGATTCTCTCTGTTCTTAAAAATGGCATAGCCATTGGTGATAAAAAGTTTAAGTTTCTTGCATTCTCATCAAGTCAGCTAAGAGAGAATTCTTTGTGGATGTTTGCTTCCAGACCTGGCCTTGATGCAGCTGTTATTAGAGAGTGGATGGGTGATTTTCAACATATCAAGAATCCAGCAAAGTACGCTGCTAGATTGGGACAATCGTTCGGCTCATCGACGGAGACTCTTTCGGTTGCTAGGCATGAAAGGGAAATCATTCCTGACATAGAGGTTCAACATGGTGAAGTCAAGTATGTCTTTTCTGATGGAATTGGCAAAATATCAAGTGATTTTGCCAAAAGGGTTGCTTCAAAATGCGTGCTAGCGTTCACTCCGTCTGCTTTTCAGATTCGTTATGGTGGATATAAGGGTGTCGTTGCTGTTGATCCACGCTCGTCTGTAAAGTTATCTCTGAGGAAGAGTATGTGCAAATTTGAATCAGACAACACGAAACTCGACGTCTTAGGCTATAGCAAATACCAACCATGCTTCCTGAATCGTCAGCTGATAACTCTTTTGTCGACTCTAGGCGTTAAAGATGAGGTTTTTGAGAAGAAACAAAGTGAAGCTTTAGAACAATTGGATGCCATATTAACAGATCCACTGAAGGCTCAAGAAGCCTTAGAGTTGATGTCTCCTGGAGAGAATACTAACATTCTCAAGGAGATGCTCAAATGTGGCTATAAACCAGATGTTGAGCCTTATCTATCAATGATGTTACAGACTTTCCGGGAGTCGAAGTTGCTAGAATTACGAACCAAATCGAGAATCTTTATTCCGAATGGGCGAGCGATGATGGGATGTCTAGACGAGACTGGGACCTTGGAGTATGGACAGGTATTTGTACAAATCTCCAATGCTAGGCATAGACATATATCTGATACTTCTGCATTCGATATGAGCGGTTCGGAAGACCATTTAGTTATCGTGGGAAACGTAACTGTTGCGAAAAATCCCTGCCTGCACCCCGGCGATGTTCGTGTGCTAAACGCTGTAAATGTACCTCTGTTGTATCATATGGTTGACTGTGTAGTTTTTCCACAAAAAGGATCAAGGCCTCATCCAAACGAATGCTCGGGTAGCGACTTGGACGGTGATATATACTTCGTCTGTTGGGACACTGAATTGATCCCACCTCGACAAATTCCGCCGATGGATTATACTCCTGCACCTCCCATTCAGTTAGATCGTGATGTCACAATCGAGGATGTTCAAGAATATTTTGTGAACTACATGGTTAATGATAGCCTTGGAATCATTGCCAATGCTCACACTGCGTTTGCAGATAAAGAGCCTTTCAAAGCAAGAAGTGCTCCTTGTATAGAGCTTGCAAAGCTATTCTCCATTGCTGTGGACTTCCCAAAAACTGGAGTACCTGCTATAATACCTTCACATTTGAATGTCAAAGAGTTTCCCGACTTTATGGAGAAGCCTGACAGGCACTCGTATGAATCAAAGAACGTGATTGGAAAACTTTTCCGGGCAGTAAAGGGCATTGCACCAAATATAAGCTACATTAGGTCGTTTACTCGAGATGTAGCAATGCGGTGTTACGACTCCGATATGGAAGCTGAAGGCTTTGAAGATTACGTTGAAGATGCCATCTATCATAAAACTATATATGATTACAAGTTGGGGAATTTGCTTGATTATTACGGGATCAAGTCCGAGTCCGAGATATTTAGTGGCAATATTATGAGAATGTCGAAGTCTTTCACAAGGAGAAGAGACGCAGAAGCCATCAACTTGGCTGCAAGGTCTCTAAGAAAGGAGGCTAGGACATGGTTCAATACGAAAGAAAGCGGTCTGGATTCAGGCTCAGATGATTTATTTGCCAAAGCTTCGGCGTGGTACCATGTCACTTATCATCATTCGTATTGGGGCTCCTATAATGACGGAATGAAACGCGACCATTATTTGAGCTTCCCATGGTGTGTTTACCACAAACTGATGCAAGTCAAGGAGAATAATTTGAGGAAAAGAGAGAGAGCTTCAAGATTGGCGACTCTTGATAGATTCAGCCGTGTCTTAAATCTCGATGGACGTTGA 3396 41.73 MGKTVHISGFPSHATADSVKSFLELRTGLGTVYAIKVRPPKRGGSRVYAIVQFTGAAQAELIISLANQRLWYGSSYLKARAADVDIVPKPRTYVHTLENLTLCFGCQVSSEKFHVLWEGDVELVTFGVEMRKMNFHLIHNFVEYRFQLSYENIWQIQLHRLQHQSMKCLLIQLYGAPRIYKKVAPSSGQIFDDPLFNFFKEVPDDQCVRTADFTPSYSIGQSSSLCLKLPNGRQLPNFRRHFAYYEEFEDEFKLVDGGNGFSCSDDLVPVVDSHPNVLLPYEIIFKVNVLVQNGCIPGPSLDTGFYRLVDPSRIRVEYVENALEKLFHLKECCYEPSSFLTEQYKKYAKHPSNSPAIALDAGLVYVRRVQITPCKVYFCGPEVNVSNRVLRHFSRDLDNFLRVSFVDEEWDKMRSTDLLPRMASSIENGKTDIYRRILSVLKNGIAIGDKKFKFLAFSSSQLRENSLWMFASRPGLDAAVIREWMGDFQHIKNPAKYAARLGQSFGSSTETLSVARHEREIIPDIEVQHGEVKYVFSDGIGKISSDFAKRVASKCVLAFTPSAFQIRYGGYKGVVAVDPRSSVKLSLRKSMCKFESDNTKLDVLGYSKYQPCFLNRQLITLLSTLGVKDEVFEKKQSEALEQLDAILTDPLKAQEALELMSPGENTNILKEMLKCGYKPDVEPYLSMMLQTFRESKLLELRTKSRIFIPNGRAMMGCLDETGTLEYGQVFVQISNARHRHISDTSAFDMSGSEDHLVIVGNVTVAKNPCLHPGDVRVLNAVNVPLLYHMVDCVVFPQKGSRPHPNECSGSDLDGDIYFVCWDTELIPPRQIPPMDYTPAPPIQLDRDVTIEDVQEYFVNYMVNDSLGIIANAHTAFADKEPFKARSAPCIELAKLFSIAVDFPKTGVPAIIPSHLNVKEFPDFMEKPDRHSYESKNVIGKLFRAVKGIAPNISYIRSFTRDVAMRCYDSDMEAEGFEDYVEDAIYHKTIYDYKLGNLLDYYGIKSESEIFSGNIMRMSKSFTRRRDAEAINLAARSLRKEARTWFNTKESGLDSGSDDLFAKASAWYHVTYHHSYWGSYNDGMKRDHYLSFPWCVYHKLMQVKENNLRKRERASRLATLDRFSRVLNLDGR 1131
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 451848 456720 - CmaCh04G000910.1 Cma04g00091 291172

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00091 1131 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 3 84 IPR000504 GO:0003723
Cma04g00091 1131 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1123 - -
Cma04g00091 1131 SMART rrm1_1 4 80 IPR000504 GO:0003723
Cma04g00091 1131 Pfam RNA dependent RNA polymerase 371 945 IPR007855 GO:0003968
Cma04g00091 1131 PANTHER RNA-DEPENDENT RNA POLYMERASE 2 1123 IPR007855 GO:0003968
Cma04g00091 1131 CDD RRM_SF 5 73 - -
Cma04g00091 1131 SUPERFAMILY RNA-binding domain, RBD 2 86 IPR035979 GO:0003676
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00091 K11699 RDR, RDRP; RNA-dependent RNA polymerase [EC:2.7.7.48] - csv:101206705 1897.86
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00091 Cma-Chr4:451848 Cma04g02132 Cma-Chr4:14906857 0 dispersed
Cma04g00090 Cma-Chr4:446317 Cma04g00091 Cma-Chr4:451848 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g507 . . . . . . . . . . . Cma04g00091 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Bda07g01742 . . . . . . . Cmo15g00938 . . . Car15g00840 Cpe13g00418 . Bhi12g00954 . . . Hepe02g2614 . Lcy10g1379 Cla01g00645 Cam01g0673 Cec01g0664 Cco01g0691 Clacu01g0661 Cmu01g0634 Cre09g1871 Lsi09g00694 . Chy09g00814 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002346 1 2 2 1 1 2 0 2 2 2 2 2 2 1 2 2 4 3 2 2 2 3 2 2 2 2 2 5 3 2 62
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00091 Cma_Chr04 FPKM 3.465559 4.652758 3.595758 3.062297 5.576148 5.520499 6.006987 30.182238 28.763367 32.65345