Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00096 ATGGAGACCTCGGCTTCCAATTCTGATCCTTACCCCAATTCTTCTTCACCCACAACTTCTCCTACCTCCTCCAGATTTGGGGTCTCGATCCCTTCGCTCAATTTCTTCCGTTCGCCTCTGTCCGTCATTTTGGATTACTCTGGAATTCTTCCCACTAGGGCTGTTCCTCATGAATCGGAACCTATAATCAACGGCTCTGCCACCCCTGATTTGCGGGTTTATTCTCAAAATCAGAATCACTTGATGACCACCACCACTTCTTCTTCTTCTTCTTCTAGTACTAGTCCCACCTCCTCCTCCTCCTCCGGTAATACCAGCCCCTCTGGGGAGGTTTCGATTAGGATTATTGGGTCTGGTGAGCAAGATCCTTCTCCGGCTCTGGTTGGACAAGCTGGCTATGAGCAAAATGGTGGACTTCCTGTTTCTGGGGATCAGCCGGAATCCCCTGATGAGGAACGAGTTCCTTTGGTGTCCACTGCTTCTTCGTCTATTCAATCTGGAAGCAGTCGTGTTTCAGAATCTGGAAATGGCGTGGAAGAGAGTGTTAATAGAGATTCGTCTTATCAGAGATACGATATTCAGCAGGTTGCCAGGTGGATTGAACAGATTCTTCCTTTCTCTTTGCTACTGCTGATAGTCTTTATCCGTCAGCATTTGGAAGGTTTTTTCATCACAATTTGTATATCAGCTGTTATGTATAAGTCGAACGATATTGTCAAGAAACAGACTGCTCTAAAGGGGGAGAGGAAAATTTCTGTCCTTGCTGGGACATCTATTGCATTTTTGGTTCATGTTATTGGGATTTACTGGTGGTGCCATCGTGATGATCTTCTATACCCGTTAGTCATGCTTCCACCAAAGACAGTACCACCGTTTTGGCATGCCTTGTTCATAATTTTGGTTAACGATACGATGGTGAGGCAGGTTGCAATGGCTCTCAAATGTCTTCTTCTTATTTACTACAAGAATGGCAGAGGCCATAATTTTCGCCGGCAGGGACAAATTTTAACTCTCATGGAATACACTCTTCTGTTGTATCGTGCATTGTTACCGACACCTGTATGGTACCGGTTTTTCTTGAACAAAGATCAAGGGAGCCTTTTTTCATCACTGACAACGGGATTGTATTTAACCTTCAAGCTAACTTCTGTTGTTGAGAAGATTCAATCATTCGTGGCTGCATTTAAGGCTCTATCACAAAAAGAAGTCCATTATGGATCATATGCCACATCAGAACAGGTAAGTGCGGCGGGAGACCTCTGTGCTATTTGCCAGGAGAAGATGAATGCTCCAATCCTGTTACGCTGTAAGCACATCTTCTGTGAAGATTGTGTTTCTGAATGGTTTGAAAGAGAAAGAACTTGCCCTCTCTGCCGGGCACTGGTAAAGCCAGCAGAACTCCGAACATTTGGCGACGGGTCGACCAGCTTACTCTTCCAGTTGTTTTAG 1449 45.0 METSASNSDPYPNSSSPTTSPTSSRFGVSIPSLNFFRSPLSVILDYSGILPTRAVPHESEPIINGSATPDLRVYSQNQNHLMTTTTSSSSSSSTSPTSSSSSGNTSPSGEVSIRIIGSGEQDPSPALVGQAGYEQNGGLPVSGDQPESPDEERVPLVSTASSSIQSGSSRVSESGNGVEESVNRDSSYQRYDIQQVARWIEQILPFSLLLLIVFIRQHLEGFFITICISAVMYKSNDIVKKQTALKGERKISVLAGTSIAFLVHVIGIYWWCHRDDLLYPLVMLPPKTVPPFWHALFIILVNDTMVRQVAMALKCLLLIYYKNGRGHNFRRQGQILTLMEYTLLLYRALLPTPVWYRFFLNKDQGSLFSSLTTGLYLTFKLTSVVEKIQSFVAAFKALSQKEVHYGSYATSEQVSAAGDLCAICQEKMNAPILLRCKHIFCEDCVSEWFERERTCPLCRALVKPAELRTFGDGSTSLLFQLF 482
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 475083 480430 - CmaCh04G000960.1 Cma04g00096 291177
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00096 482 ProSiteProfiles Zinc finger RING-type profile. 421 459 IPR001841 -
Cma04g00096 482 PANTHER UNCHARACTERIZED RING FINGER-CONTAINING PROTEIN 13 482 IPR044235 GO:0061630|GO:1904294
Cma04g00096 482 SUPERFAMILY RING/U-box 414 464 - -
Cma04g00096 482 CDD RING-HC_RNFT1_like 420 459 - -
Cma04g00096 482 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 13 482 - -
Cma04g00096 482 Pfam Zinc finger, C3HC4 type (RING finger) 419 462 - -
Cma04g00096 482 SMART ring_2 421 458 IPR001841 -
Cma04g00096 482 MobiDBLite consensus disorder prediction 1 28 - -
Cma04g00096 482 MobiDBLite consensus disorder prediction 82 112 - -
Cma04g00096 482 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 468 IPR013083 -
Cma04g00096 482 MobiDBLite consensus disorder prediction 155 184 - -
Cma04g00096 482 MobiDBLite consensus disorder prediction 82 184 - -
Cma04g00096 482 ProSitePatterns Zinc finger RING-type signature. 436 445 IPR017907 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00096 Cma-Chr4:475083 Cma07g01198 Cma-Chr7:6577258 3.60E-142 dispersed
Cma04g00096 Cma-Chr4:475083 Cma04g01053 Cma-Chr4:5440327 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00096 - K22379 csv:101207430 795.808