Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00100 ATGGAGGCTGCCGGTTCGTCTTCTTCTCAAAATGGGTACCAACCCCATGTTCTTGCTGTTGATGATAATCTCGTTGATCGTAAACTCGTTGAGAAATTGCTCAAAAACTCCTCTTTTAAAGTGACAACAGCAGAAAATGGTCGCAGTGCTCTGGAGTTTCTGGGTTTGTTGGATGAACACGAACATGAACACAACAACATAGAATGCGTTGGTAGGTCGAAGGTGAACATGATCATCACGGATTACTGCATGCCCGGAATGTCCGGATACGAACTTCTCAAGAAAATCAAGAGATGTTCGAGGATGAAGGAAGTTCCTGTAGTGGTGGTGTCATCAGAGAATGTGCCCACTCGCATCAACAAGTGTTTGGAGGAAGGAGCAGAGATGTTCATGCTCAAACCTTTGAAGCAATCTGATGTGGTGAAGCTCAAGTGCCANTGA 441 44.9 MEAAGSSSSQNGYQPHVLAVDDNLVDRKLVEKLLKNSSFKVTTAENGRSALEFLGLLDEHEHEHNNIECVGRSKVNMIITDYCMPGMSGYELLKKIKRCSRMKEVPVVVVSSENVPTRINKCLEEGAEMFMLKPLKQSDVVKLKCX 146
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 495945 496885 - CmaCh04G001000.1 Cma04g00100 291181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00100 146 Gene3D - 10 144 - -
Cma04g00100 146 SMART REC_2 15 144 IPR001789 GO:0000160
Cma04g00100 146 ProSiteProfiles Response regulatory domain profile. 16 146 IPR001789 GO:0000160
Cma04g00100 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR ARR17-LIKE 5 145 - -
Cma04g00100 146 Pfam Response regulator receiver domain 17 142 IPR001789 GO:0000160
Cma04g00100 146 PANTHER TWO-COMPONENT RESPONSE REGULATOR 5 145 IPR045279 GO:0009736
Cma04g00100 146 SUPERFAMILY CheY-like 15 141 IPR011006 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00100 Cma-Chr4:495945 Cma03g00130 Cma-Chr3:1360782 9.83E-50 dispersed
Cma04g00100 Cma-Chr4:495945 Cma14g00515 Cma-Chr14:2564303 4.83E-52 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34737 PF00072 Response_reg 2.00E-21 CL0304 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00100 K14492 - csv:101208898 229.565