Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00102 ATGCGAGCATTGTTGAAGATGAAACGGCTGCTTGAGCTCTTTGTGTTGTTCGTTTTGGCTCCACTCTGCGCGAGATGTCTAAATCTATCTTTAAACGACGACGTTTTGGGCCTGATAGTGTTTAAAGCTGCTGTTGAAGATCCAAAGCAGAACCTCGCGACCTGGGACGAAGATGACGATAGTCCCTGCAACTGGACTGGTGTTCAATGCAGTCCCAGATCCAAACGGGTTGTCGAGCTCAACCTCGACGGATTCTCTCTCTCGGGTCGGCTCGGTCGAGGGCTTTCCCAGTTGGAGTTTCTGCAGAGATTGTCGTTATCAAAGAACAATCTCAGTGGAAATTTAAGCCCCAATTTTGCTCGAGTGGATAATCTTCAGGTGATTGATTTGAGCGGGAATAATTTGTCTGGAACTGTTCCAGATGATTTTTTCCGTCAATGTGGGTCTTTGAGAGTTGTTTCTTTGGCCATCAACAAATTTGATGGGAAAATTCCTGATAGTTTGAGCTCGTGTGGGAGTCTTATTGCTGTTAACTTGTCCTCGAATCAGTTTTCGGGTCCTTTGCCCTCTGGGATTTTGTCTCTCAGTGGGCTTCGATCATTGGACTTGTCTGATAATGCTCTGATGGGTGAAATTCCGAAGGTAATTGAGAATTTATATAACCTGCGGACTCTTAACTTGAGGAAGAATCAACTTTCTGCACAGATTCCTGATGGTATTGGCAGCTGCTTGCTTCTGAGGTCCATTGATCTTAGTGAGAATTCATTCTCTGGGAACCTTCCTCAGACTATGCAGAAACTTGTTCTTTGTAGTGAACTGAGTTTGAGCAGGAATTTGTTCGAAGGAAATGTTCCAGAGTGGATAGGAGAAATGAAAAGCCTTGAAACTCTGGACTTTTCCGGGAACAATTTCACAGGTCATATTCCAAATACAATGGGGAATCTTCAATATCTAAAAGTATTAAATCTCTCTTCAAATGGCTTTACTGATAGCTTTCCAGAGTGTGTGATGAAATGCCAAAACCTTCTGGCAATAGATATCAGTCATAATTTCATCATGGGTAATCTTCCAGCGATTGGAAGTTTAGCCAAGCTGCAGTTTCTGAACCTGTCTGGGAATTCTTTTGTTGGACCTATTCCAGAAACTATTGGAGATCTGAAAGCTTTGAGCGTTCTTGATTTGAGCAGAAATCGTCTGAATGAAAGTATTCCCGAAGCCATTGGAGGAGCTGTGTCCCTAATGGAACTGAAGCTGGATGAAAATTTTCTAGGGGGTGAACTTCCCTCTTCAATTGGTCATTGTTCTTCCCTTACAACTTTGTTCACATCGCACAATAACTTAACTGGCCCGATACCTGCGGAGTTGGCTACACTCACTTATCTCCGAAATGTCGACTTATCCTTTAACAACCTCAATGGGACTCTTCCAAAGCAGTTGTCTAATCTTCCAAACCTTCTTTTGTTCAATATTTCTCATAACGACCTCAAGGGTGAGCTGCCTGGTGGTGTATTCTTTAACACCATCTCCCCTTCATCCGTAGCTGGAAATCCATCCCTTTGTGGTTCTGTCGTTAATAAGTCTTGCCCTTCTGTTCTTCCAAAACCTATTGTGCTCGATCCCAACTCCACTTCAGATTCCATTTCCAGCTCACTGCCTCCAAGTACTAATCTCAGAAGAAATAGAAATATCCTCAGCATTTCTGCACTGGTTGCCATTGGCGCCGCTGCTTTCATCATCATAGGCATCATATTGATCACCATCCTCAACAGTCGTGTTCAATCGCCCACGTCTTCTTTGTCTGCAGCTGCACTTGCATTATCCATAGGGGATGATTTCAGTCATTCCTCCAGTCCTGATGCGAATTCGGGAAAGCTTGTGGTGTTGTCAGGAGAGCTCGACTTTAGCGCAGGAGCACATGCCCTGCTCAACAAGGATTGTGAGCTTGGGTGCGGTGGGTTTGGAGCAGTTTACCATACCGTTCTGCGGGATGGACGCTCTGTTGCAATCAAGAAGCTCACAGTTTCTAGCCTCGTCAAGTCCCAAGAAGATTTCGAGAGGGAAGTCAGGAAATTTGGGAATGTCAGGCACCAAAATCTGGTGACACTCGAAGGCTATTATTGGACTCCGTTGCTACAGCTCCTTATATACGAATATGTCTCTGGAGGTAGCTTATATGGGCTTCTACATGAAGCATCGGATGACAATGTACTGCCATGGAATGAGAGGTTCAACATAATTCTGGGCACAGCAAAAGGACTGGCTCACCTGCATCAATCAAACACCATCCACTATAACATAAAATCCAGCAATATTCTTATTGATTGTCATGGTCATCCTAAGGTGGGAGATTATGGTCTAGCAAGATTGCTCCCAATGTTAGACCGTTATGTTTTAAGCAGCAAGATCCAGAGTGCGCTCGGTTACATGGCACCAGAGTTCGCTTGCAGGACAGTGAAGATAACTGAAAAATGCGACATGTACGCCTTTGGTATCTTGATTCTGGAGATAGTTACAGGAAAGAGGCCTGTCGAGTACATGGAAGACGACGTAGAAGTCCTCTGTGACATGGTCAGAGTAGCAGTGGACGAAGGAAGAGCCGAAGAATGCATCGACAGTAAGCTGAGGGGGAATTTCCCAGCCGAAGAGGCTGTTCCTGTATTGAAATTAGGCTTGATCTGCACCTCCCACGTGCCATCAAACCGACCCGAAATGAGAGAAATGGTCAAGATACTGGAGATGATCAAATGCCCATCCGAATTACAAGAGTTGGGATAA 2775 44.68 MRALLKMKRLLELFVLFVLAPLCARCLNLSLNDDVLGLIVFKAAVEDPKQNLATWDEDDDSPCNWTGVQCSPRSKRVVELNLDGFSLSGRLGRGLSQLEFLQRLSLSKNNLSGNLSPNFARVDNLQVIDLSGNNLSGTVPDDFFRQCGSLRVVSLAINKFDGKIPDSLSSCGSLIAVNLSSNQFSGPLPSGILSLSGLRSLDLSDNALMGEIPKVIENLYNLRTLNLRKNQLSAQIPDGIGSCLLLRSIDLSENSFSGNLPQTMQKLVLCSELSLSRNLFEGNVPEWIGEMKSLETLDFSGNNFTGHIPNTMGNLQYLKVLNLSSNGFTDSFPECVMKCQNLLAIDISHNFIMGNLPAIGSLAKLQFLNLSGNSFVGPIPETIGDLKALSVLDLSRNRLNESIPEAIGGAVSLMELKLDENFLGGELPSSIGHCSSLTTLFTSHNNLTGPIPAELATLTYLRNVDLSFNNLNGTLPKQLSNLPNLLLFNISHNDLKGELPGGVFFNTISPSSVAGNPSLCGSVVNKSCPSVLPKPIVLDPNSTSDSISSSLPPSTNLRRNRNILSISALVAIGAAAFIIIGIILITILNSRVQSPTSSLSAAALALSIGDDFSHSSSPDANSGKLVVLSGELDFSAGAHALLNKDCELGCGGFGAVYHTVLRDGRSVAIKKLTVSSLVKSQEDFEREVRKFGNVRHQNLVTLEGYYWTPLLQLLIYEYVSGGSLYGLLHEASDDNVLPWNERFNIILGTAKGLAHLHQSNTIHYNIKSSNILIDCHGHPKVGDYGLARLLPMLDRYVLSSKIQSALGYMAPEFACRTVKITEKCDMYAFGILILEIVTGKRPVEYMEDDVEVLCDMVRVAVDEGRAEECIDSKLRGNFPAEEAVPVLKLGLICTSHVPSNRPEMREMVKILEMIKCPSELQELG 924
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 508360 512049 + CmaCh04G001020.1 Cma04g00102 291183
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00102 924 Pfam Leucine Rich Repeat 124 143 IPR001611 GO:0005515
Cma04g00102 924 Pfam Leucine Rich Repeat 293 315 IPR001611 GO:0005515
Cma04g00102 924 Gene3D Ribonuclease Inhibitor 191 311 IPR032675 -
Cma04g00102 924 Gene3D Transferase(Phosphotransferase) domain 1 719 922 - -
Cma04g00102 924 Gene3D Phosphorylase Kinase; domain 1 635 718 - -
Cma04g00102 924 SUPERFAMILY Protein kinase-like (PK-like) 646 912 IPR011009 -
Cma04g00102 924 SUPERFAMILY L domain-like 196 531 - -
Cma04g00102 924 ProSitePatterns Protein kinases ATP-binding region signature. 648 671 IPR017441 GO:0005524
Cma04g00102 924 ProSiteProfiles Protein kinase domain profile. 642 914 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00102 924 Gene3D Ribonuclease Inhibitor 314 532 IPR032675 -
Cma04g00102 924 Gene3D Ribonuclease Inhibitor 32 190 IPR032675 -
Cma04g00102 924 Pfam Leucine rich repeat 317 374 IPR001611 GO:0005515
Cma04g00102 924 SUPERFAMILY L domain-like 32 280 - -
Cma04g00102 924 SMART LRR_typ_2 386 410 IPR003591 -
Cma04g00102 924 SMART LRR_typ_2 195 218 IPR003591 -
Cma04g00102 924 SMART LRR_typ_2 291 315 IPR003591 -
Cma04g00102 924 SMART LRR_typ_2 122 146 IPR003591 -
Cma04g00102 924 SMART LRR_typ_2 482 506 IPR003591 -
Cma04g00102 924 SMART LRR_typ_2 219 243 IPR003591 -
Cma04g00102 924 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 359 916 - -
Cma04g00102 924 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE IRK-RELATED 8 358 - -
Cma04g00102 924 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 359 916 - -
Cma04g00102 924 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 8 358 - -
Cma04g00102 924 Pfam Leucine rich repeat N-terminal domain 32 71 IPR013210 -
Cma04g00102 924 Pfam Protein tyrosine and serine/threonine kinase 644 911 IPR001245 GO:0004672|GO:0006468
Cma04g00102 924 PRINTS Leucine-rich repeat signature 125 138 - -
Cma04g00102 924 PRINTS Leucine-rich repeat signature 386 399 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00102 Cma15g00170 CCT
Cma04g00102 Cma04g01061 ECH
Cma04g00102 Cma15g00170 ECH
Cma04g01061 Cma04g00102 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00102 Cma-Chr4:508360 Cma14g01481 Cma-Chr14:11254750 0 dispersed
Cma14g00010 Cma-Chr14:56848 Cma04g00102 Cma-Chr4:508360 1.02E-18 wgd
Cma15g00170 Cma-Chr15:777070 Cma04g00102 Cma-Chr4:508360 0 wgd
Cma04g00102 Cma-Chr4:508360 Cma04g01061 Cma-Chr4:5479046 0 wgd
Cma04g00102 Cma-Chr4:508360 Cma06g00186 Cma-Chr6:954289 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68454 PF07714 PK_Tyr_Ser-Thr 1.00E-39 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00102 - - csv:101217762 1507.66