Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00104 ATGTCCTCCCAACACATCAATGCCCTCAACTCCCACCTCCTCTTCCAACACGAAGCCATCCCCTTCAATTCCTCCACCACGTCGCAGCGCCGCGTCACCGACCCATCTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTACAGAACGAGATCGATTCTTCGCCCATCAGGGTGGCGATTTTCGCCAGAGTTTGTTTTGTGATGGCCGGAATTGGAATGGGAATGGGAGTGGGAGGACTGGAAGTGGGAAAGGATCGGATGAAGAAGATGAGGATGATGACGACGACGACGAAGATGAAGTCGATGATGACGATGGCGATGTTGAAGGACTTGTTTCTTTGGATGATGTTAATAAGTCCAGAAAAACTGGTAACCCCAATAGCAGCAACAATGAGAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGCAATGGGAAGCCTAAGCAACATTCTTCTTTTGGTGGAACTTTGTTGGTTAAGGATGGGATGGCTGCCCCTTCTGGGAGTAACACAGGAGAAGCTCAGAGTGAGAATCACCAGCAGGGAAGGTTGGGGAATTACCCAAATGCGGTTACAATTGCAGAACATGACAGTGAAACGTATTATTCCCAATATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACACAAGGATTTGGCTATGGAAAATGGATGTGGGTTTGGGAGAAGGGATGTTTTTCTTTTGGGTGAGCCTGGAGAGTCTCTCAGAGCAATTCTCACAGACCCTGTGACGGGCTCTCTAATGGATGATGCAATGATATTATCGTGTGGGCATTCCTTCGGCAGTGGTGGAATAGAACATGTTCTTAGACTAAAATCTTGTTACACGTGTTCTCAGTTGGTTTCTGAAGACTTAATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCGAGCATTTCGTCGGGAAGAAGAATTGTTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGCTATAGTGATTCGACCATGGGTACTCGAAGGGGTCGAGGCGTTCAGTTTCCTTTTGCAGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCTGCGTTTCGTGGGACGTGAAGCTGTTGTTACAACACAGTGTTTGAATGGATGGTACGTGGTGAAAACACTAGACAGTGCAGAGAGTGTAAAGTTGCAATACCGCTCGCTTGCGAAGGTTCCGAATGATGCAGCATCAAAAACGACAACAAGTAAGATAGCACCTAATTGGCTTTAG 1302 48.08 MSSQHINALNSHLLFQHEAIPFNSSTTSQRRVTDPSPKTRELCGFMDDKLFPTERDRFFAHQGGDFRQSLFCDGRNWNGNGSGRTGSGKGSDEEDEDDDDDDEDEVDDDDGDVEGLVSLDDVNKSRKTGNPNSSNNERSDQSGGGLKNGTNKLGNGKPKQHSSFGGTLLVKDGMAAPSGSNTGEAQSENHQQGRLGNYPNAVTIAEHDSETYYSQYLQGTEGSASGHKDLAMENGCGFGRRDVFLLGEPGESLRAILTDPVTGSLMDDAMILSCGHSFGSGGIEHVLRLKSCYTCSQLVSEDLIAQNLSLQAAVRAFRREEELLFYRSPKRRRERFEQDKGGYSDSTMGTRRGRGVQFPFAVTDRVIIKGNKRTPLRFVGREAVVTTQCLNGWYVVKTLDSAESVKLQYRSLAKVPNDAASKTTTSKIAPNWL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 513356 517082 + CmaCh04G001040.1 Cma04g00104 291185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00104 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Cma04g00104 433 MobiDBLite consensus disorder prediction 123 162 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 73 87 - -
Cma04g00104 433 SUPERFAMILY RING/U-box 253 324 - -
Cma04g00104 433 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842|GO:0016567
Cma04g00104 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 38 433 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 179 196 - -
Cma04g00104 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 38 433 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 92 116 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 73 196 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01063 Cma04g00104 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00104 Cma-Chr4:513356 Cma04g01063 Cma-Chr4:5484863 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00104 - - mcha:111015962 645.58