Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00104 ATGTCCTCCCAACACATCAATGCCCTCAACTCCCACCTCCTCTTCCAACACGAAGCCATCCCCTTCAATTCCTCCACCACGTCGCAGCGCCGCGTCACCGACCCATCTCCCAAAACCCGCGAGCTCTGCGGTTTCATGGACGACAAGCTCTTCCCTACAGAACGAGATCGATTCTTCGCCCATCAGGGTGGCGATTTTCGCCAGAGTTTGTTTTGTGATGGCCGGAATTGGAATGGGAATGGGAGTGGGAGGACTGGAAGTGGGAAAGGATCGGATGAAGAAGATGAGGATGATGACGACGACGACGAAGATGAAGTCGATGATGACGATGGCGATGTTGAAGGACTTGTTTCTTTGGATGATGTTAATAAGTCCAGAAAAACTGGTAACCCCAATAGCAGCAACAATGAGAGAAGCGATCAGAGTGGTGGGGGCTTGAAGAATGGGACGAACAAATTGGGCAATGGGAAGCCTAAGCAACATTCTTCTTTTGGTGGAACTTTGTTGGTTAAGGATGGGATGGCTGCCCCTTCTGGGAGTAACACAGGAGAAGCTCAGAGTGAGAATCACCAGCAGGGAAGGTTGGGGAATTACCCAAATGCGGTTACAATTGCAGAACATGACAGTGAAACGTATTATTCCCAATATTTGCAAGGCACTGAGGGGTCTGCTTCTGGACACAAGGATTTGGCTATGGAAAATGGATGTGGGTTTGGGAGAAGGGATGTTTTTCTTTTGGGTGAGCCTGGAGAGTCTCTCAGAGCAATTCTCACAGACCCTGTGACGGGCTCTCTAATGGATGATGCAATGATATTATCGTGTGGGCATTCCTTCGGCAGTGGTGGAATAGAACATGTTCTTAGACTAAAATCTTGTTACACGTGTTCTCAGTTGGTTTCTGAAGACTTAATTGCCCAAAACTTATCTCTTCAAGCTGCAGTCCGAGCATTTCGTCGGGAAGAAGAATTGTTATTTTACCGCTCACCGAAAAGGAGAAGGGAGAGGTTTGAGCAGGACAAGGGTGGCTATAGTGATTCGACCATGGGTACTCGAAGGGGTCGAGGCGTTCAGTTTCCTTTTGCAGTGACAGATCGGGTAATTATCAAGGGGAACAAGAGGACACCGCTGCGTTTCGTGGGACGTGAAGCTGTTGTTACAACACAGTGTTTGAATGGATGGTACGTGGTGAAAACACTAGACAGTGCAGAGAGTGTAAAGTTGCAATACCGCTCGCTTGCGAAGGTTCCGAATGATGCAGCATCAAAAACGACAACAAGTAAGATAGCACCTAATTGGCTTTAG 1302 48.08 MSSQHINALNSHLLFQHEAIPFNSSTTSQRRVTDPSPKTRELCGFMDDKLFPTERDRFFAHQGGDFRQSLFCDGRNWNGNGSGRTGSGKGSDEEDEDDDDDDEDEVDDDDGDVEGLVSLDDVNKSRKTGNPNSSNNERSDQSGGGLKNGTNKLGNGKPKQHSSFGGTLLVKDGMAAPSGSNTGEAQSENHQQGRLGNYPNAVTIAEHDSETYYSQYLQGTEGSASGHKDLAMENGCGFGRRDVFLLGEPGESLRAILTDPVTGSLMDDAMILSCGHSFGSGGIEHVLRLKSCYTCSQLVSEDLIAQNLSLQAAVRAFRREEELLFYRSPKRRRERFEQDKGGYSDSTMGTRRGRGVQFPFAVTDRVIIKGNKRTPLRFVGREAVVTTQCLNGWYVVKTLDSAESVKLQYRSLAKVPNDAASKTTTSKIAPNWL 433
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 513356 517082 + CmaCh04G001040.1 Cma04g00104 291185

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00104 433 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 251 323 IPR013083 -
Cma04g00104 433 MobiDBLite consensus disorder prediction 123 162 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 73 87 - -
Cma04g00104 433 SUPERFAMILY RING/U-box 253 324 - -
Cma04g00104 433 ProSiteProfiles U-box domain profile. 252 324 IPR003613 GO:0004842|GO:0016567
Cma04g00104 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62 38 433 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 179 196 - -
Cma04g00104 433 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 62-RELATED 38 433 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 92 116 - -
Cma04g00104 433 MobiDBLite consensus disorder prediction 73 196 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00104 - - - mcha:111015962 645.58
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g01063 Cma04g00104 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00104 Cma-Chr4:513356 Cma04g01063 Cma-Chr4:5484863 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g457 . . . . . . . . . . . Cma04g00104 . . . . Cpe01g01842 . . . . . . . . . . . . . . . . Cone6ag0389 . . Csa05g02015 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy09g00843 Cme09g01375
Vvi13g172 . . . . . . . . . . Cma04g01063 Cma04g00104 Car04g00098 . . . . . . . . . . . Cla07g00485 Cam07g0521 Cec07g0574 . Clacu07g0529 Cmu07g0566 Cre07g0899 Cone1ag1616 Cone5ag0138 . . . . Chy10g00311 Cme10g01252 . . . . . . . . . . . . . . . Cpe01g00964 . . . . . . . . . . . . . . . Lsi04g01019 Csa05g00898 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma05g01403 CST 2 718 Plant U-box Gene Family AT5G57035 53.1 9.7e-223 770.8
Cma04g01063 CST 183 434 Plant U-box Gene Family AT5G05230 55.0 2.8e-68 256.5
Cma04g00104 CST 201 433 Plant U-box Gene Family AT5G05230 57.3 1.3e-65 247.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004883 1 1 1 1 1 1 2 1 1 2 1 1 2 2 2 0 1 2 1 1 2 1 1 1 1 1 1 2 4 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00104 Cma_Chr04 FPKM 19.488935 20.497004 13.894308 13.660753 7.408559 7.4515 6.312298 22.701546 24.00461 23.097349