Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00106 | ATGGAAATCCCTGACCCTTCCAACCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTTTTCGCGGTTCATTACACCGCCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGAGTGATCTCGATCTCGTCTCGGACCCTTTCGATGGCCCCTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTATTGTGCACCTTTATGGACATTGAGAAGATCGGATCCAAAATCGACAATGGGTCGTCGTCGAAATCTGAAGTGGCAGACGGCGGCGGTGCTACGGCGGAGAATGTCGATGGGGAGAAAATCTCCCGCCCGAGACACCGTCATAGCAATTCCGCTGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCCGATAAACTTGCAGAGTTGTGGACTATTGATCCTAAGCGAGCTAAGAGGATTTTGGCGAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATGGAGCTTGAGAGAAAAGTTCAAAGCCTTCAAACCGAAGCGACAACTCTTTCTGCGCAGCTCACATTGTACCAGAGAGACACCACAGGGCTTTCAACCGAAAACACAGAGCTCAAACTTCGCTTACAAACTATGGAACAGCAAGCGCATTTACGTGACGCTCTTAACGAAGCATTGAAAAAGGAAGTCGAGCGCCTTAAGATTGCGACGGGGGAACTAATGACAGCTACGGATTCATATAACTTCGGAATGCTTCAAGTTTCACATCCCCAATCTTTCTTTCAGCCCCAACCGCAACCCGAACGACACAACCCGCAAAGGACTCAAAGACCCCAAGTTCATCCATTCCATTCTAGTTTACCAAACCCGCATCAAGCTATGTTCGTTGCATCCCACCAGCCACACGCCTTAACAGAAATGTTTCAGCAGGATCCTATCAGCCGATTGCAGGGTCTCGATATCGGTAGCCAAGGCGCAGAAATATAG | 984 | 49.59 | MEIPDPSNQMASSSNPTAPFRGSLHRRAHSEVHFRIPSDLDLVSDPFDGPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSKSEVADGGGATAENVDGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQTMEQQAHLRDALNEALKKEVERLKIATGELMTATDSYNFGMLQVSHPQSFFQPQPQPERHNPQRTQRPQVHPFHSSLPNPHQAMFVASHQPHALTEMFQQDPISRLQGLDIGSQGAEI | 327 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 521220 | 524565 | + | CmaCh04G001060.1 | Cma04g00106 | 291187 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00106 | 327 | Coils | Coil | 218 | 238 | - | - | |
Cma04g00106 | 327 | MobiDBLite | consensus disorder prediction | 1 | 20 | - | - | |
Cma04g00106 | 327 | MobiDBLite | consensus disorder prediction | 257 | 285 | - | - | |
Cma04g00106 | 327 | PANTHER | TRANSCRIPTION FACTOR POSF21-RELATED | 7 | 324 | - | - | |
Cma04g00106 | 327 | MobiDBLite | consensus disorder prediction | 100 | 114 | - | - | |
Cma04g00106 | 327 | CDD | bZIP_plant_RF2 | 144 | 193 | IPR044759 | GO:0003700|GO:0006355 | |
Cma04g00106 | 327 | MobiDBLite | consensus disorder prediction | 257 | 287 | - | - | |
Cma04g00106 | 327 | Gene3D | - | 142 | 193 | - | - | |
Cma04g00106 | 327 | MobiDBLite | consensus disorder prediction | 75 | 118 | - | - | |
Cma04g00106 | 327 | SUPERFAMILY | Leucine zipper domain | 143 | 194 | IPR046347 | GO:0003700|GO:0006355 | |
Cma04g00106 | 327 | Coils | Coil | 159 | 186 | - | - | |
Cma04g00106 | 327 | Pfam | bZIP transcription factor | 143 | 198 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g00106 | 327 | PANTHER | BZIP TRANSCRIPTION FACTOR 18 | 7 | 324 | - | - | |
Cma04g00106 | 327 | ProSiteProfiles | Basic-leucine zipper (bZIP) domain profile. | 141 | 204 | IPR004827 | GO:0003700|GO:0006355 | |
Cma04g00106 | 327 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
Cma04g00106 | 327 | SMART | brlzneu | 139 | 203 | IPR004827 | GO:0003700|GO:0006355 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g00696 | Cma-Chr2:4250304 | Cma04g00106 | Cma-Chr4:521220 | 1.52E-112 | dispersed | |
Cma04g00106 | Cma-Chr4:521220 | Cma20g00307 | Cma-Chr20:1509757 | 5.52E-113 | dispersed | |
Cma09g01082 | Cma-Chr9:5779135 | Cma04g00106 | Cma-Chr4:521220 | 1.63E-65 | transposed | |
Cma04g00106 | Cma-Chr4:521220 | Cma04g01066 | Cma-Chr4:5497333 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
34738 | PF00170 | bZIP_1 | 1.70E-08 | CL0018 | Cma | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00106 | - | - | csv:101209388 | 557.755 |