Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00106 ATGGAAATCCCTGACCCTTCCAACCAAATGGCTTCCTCTTCCAATCCCACCGCCCCTTTTCGCGGTTCATTACACCGCCGAGCCCATTCCGAGGTCCATTTCCGGATTCCGAGTGATCTCGATCTCGTCTCGGACCCTTTCGATGGCCCCTCTTCTGGATTTGGAGATCTGGGCTTCGAGGATGATCTATTGTGCACCTTTATGGACATTGAGAAGATCGGATCCAAAATCGACAATGGGTCGTCGTCGAAATCTGAAGTGGCAGACGGCGGCGGTGCTACGGCGGAGAATGTCGATGGGGAGAAAATCTCCCGCCCGAGACACCGTCATAGCAATTCCGCTGATGGGTCTTCCATTATGGAGTCTATTGAGGCTAAGAAGGCCATGGATCCCGATAAACTTGCAGAGTTGTGGACTATTGATCCTAAGCGAGCTAAGAGGATTTTGGCGAATAGACAGTCTGCTGCTCGGTCAAAAGAGAGGAAAGCTCGCTACATAATGGAGCTTGAGAGAAAAGTTCAAAGCCTTCAAACCGAAGCGACAACTCTTTCTGCGCAGCTCACATTGTACCAGAGAGACACCACAGGGCTTTCAACCGAAAACACAGAGCTCAAACTTCGCTTACAAACTATGGAACAGCAAGCGCATTTACGTGACGCTCTTAACGAAGCATTGAAAAAGGAAGTCGAGCGCCTTAAGATTGCGACGGGGGAACTAATGACAGCTACGGATTCATATAACTTCGGAATGCTTCAAGTTTCACATCCCCAATCTTTCTTTCAGCCCCAACCGCAACCCGAACGACACAACCCGCAAAGGACTCAAAGACCCCAAGTTCATCCATTCCATTCTAGTTTACCAAACCCGCATCAAGCTATGTTCGTTGCATCCCACCAGCCACACGCCTTAACAGAAATGTTTCAGCAGGATCCTATCAGCCGATTGCAGGGTCTCGATATCGGTAGCCAAGGCGCAGAAATATAG 984 49.59 MEIPDPSNQMASSSNPTAPFRGSLHRRAHSEVHFRIPSDLDLVSDPFDGPSSGFGDLGFEDDLLCTFMDIEKIGSKIDNGSSSKSEVADGGGATAENVDGEKISRPRHRHSNSADGSSIMESIEAKKAMDPDKLAELWTIDPKRAKRILANRQSAARSKERKARYIMELERKVQSLQTEATTLSAQLTLYQRDTTGLSTENTELKLRLQTMEQQAHLRDALNEALKKEVERLKIATGELMTATDSYNFGMLQVSHPQSFFQPQPQPERHNPQRTQRPQVHPFHSSLPNPHQAMFVASHQPHALTEMFQQDPISRLQGLDIGSQGAEI 327
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 521220 524565 + CmaCh04G001060.1 Cma04g00106 291187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00106 327 Coils Coil 218 238 - -
Cma04g00106 327 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g00106 327 MobiDBLite consensus disorder prediction 257 285 - -
Cma04g00106 327 PANTHER TRANSCRIPTION FACTOR POSF21-RELATED 7 324 - -
Cma04g00106 327 MobiDBLite consensus disorder prediction 100 114 - -
Cma04g00106 327 CDD bZIP_plant_RF2 144 193 IPR044759 GO:0003700|GO:0006355
Cma04g00106 327 MobiDBLite consensus disorder prediction 257 287 - -
Cma04g00106 327 Gene3D - 142 193 - -
Cma04g00106 327 MobiDBLite consensus disorder prediction 75 118 - -
Cma04g00106 327 SUPERFAMILY Leucine zipper domain 143 194 IPR046347 GO:0003700|GO:0006355
Cma04g00106 327 Coils Coil 159 186 - -
Cma04g00106 327 Pfam bZIP transcription factor 143 198 IPR004827 GO:0003700|GO:0006355
Cma04g00106 327 PANTHER BZIP TRANSCRIPTION FACTOR 18 7 324 - -
Cma04g00106 327 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 141 204 IPR004827 GO:0003700|GO:0006355
Cma04g00106 327 MobiDBLite consensus disorder prediction 1 22 - -
Cma04g00106 327 SMART brlzneu 139 203 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00696 Cma-Chr2:4250304 Cma04g00106 Cma-Chr4:521220 1.52E-112 dispersed
Cma04g00106 Cma-Chr4:521220 Cma20g00307 Cma-Chr20:1509757 5.52E-113 dispersed
Cma09g01082 Cma-Chr9:5779135 Cma04g00106 Cma-Chr4:521220 1.63E-65 transposed
Cma04g00106 Cma-Chr4:521220 Cma04g01066 Cma-Chr4:5497333 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34738 PF00170 bZIP_1 1.70E-08 CL0018 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00106 - - csv:101209388 557.755