Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00107 ATGGCTTCTTCTTCTTCACCATTTCCCTCTCTTCTTCTCCTTCCTTTCTTCCTCTTCCACCTCTCTTTTCCCTCCGCCTCCGCCGACTACGGCGGCTGGGAGAGCGGCCATGCCACCTTCTACGGCGGCGGAGACGCCTCTGGTACTATGGGCGGAGCTTGTGGGTATGGCAACTTGTACAGCCAAGGGTACGGCACCAACACTGTGGCGCTGAGCACAGCGCTATTCAACAACGGCCTTAGCTGTGGCGCATGCTACGAAATGACTTGCACAAATGACCCAAAATGGTGCCTGCCCGGCACCATCAAGGTCACTGCCACCAACTTCTGCCCCCCCAATTTCGCCCTCCCCAATAACAACGGCGGCTGGTGCAACCCTCCCCTCCAGCACTTTGACATGGCCGAGCCCGCCTTCCTCCAGATAGCTCAGTACCGCGCTGGAATTGTTCCCGTCTCCTTCCGAAGAGTGTCGTGCATGAAGAAAGGGGGAGTGAGGTTCACAATTAACGGTCATTCCTACTTTAACCTTGTCCTGATCACCAACGTGGGCGGTGCGGGGGACGTCCACTCGGTGTCCATAAAGGGGTCTCGAACGGGATGGCAAGCGATGTCACGAAATTGGGGCCAAAACTGGCAGAGCAACAACTATTTGAATGGGCAAGGGCTCTCCTTTCAAGTCACTCTCAGCGATGGCCGCACTCTCACAGCCAACAATCTGGTCCCTTCCAATTGGCAGTTTGGCCAAACCTTCGAAGGCCCCCAATTCTAA 768 55.99 MASSSSPFPSLLLLPFFLFHLSFPSASADYGGWESGHATFYGGGDASGTMGGACGYGNLYSQGYGTNTVALSTALFNNGLSCGACYEMTCTNDPKWCLPGTIKVTATNFCPPNFALPNNNGGWCNPPLQHFDMAEPAFLQIAQYRAGIVPVSFRRVSCMKKGGVRFTINGHSYFNLVLITNVGGAGDVHSVSIKGSRTGWQAMSRNWGQNWQSNNYLNGQGLSFQVTLSDGRTLTANNLVPSNWQFGQTFEGPQF 255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 526955 528136 + CmaCh04G001070.1 Cma04g00107 291188
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00107 255 PRINTS Expansin signature 63 77 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 90 101 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Cma04g00107 255 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
Cma04g00107 255 PANTHER EXPANSIN-A15 11 255 IPR002963 GO:0009664
Cma04g00107 255 Gene3D - 163 255 IPR036749 -
Cma04g00107 255 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cma04g00107 255 SUPERFAMILY Barwin-like endoglucanases 17 181 IPR036908 -
Cma04g00107 255 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cma04g00107 255 SMART dpbb_1 68 153 IPR007112 -
Cma04g00107 255 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 51 163 IPR007112 -
Cma04g00107 255 PRINTS Expansin/Lol pI family signature 32 47 IPR007118 GO:0005576
Cma04g00107 255 PRINTS Expansin/Lol pI family signature 50 68 IPR007118 GO:0005576
Cma04g00107 255 PRINTS Expansin/Lol pI family signature 72 90 IPR007118 GO:0005576
Cma04g00107 255 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cma04g00107 255 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Cma04g00107 255 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Cma04g00107 255 Pfam Lytic transglycolase 68 153 IPR009009 -
Cma04g00107 255 PANTHER EXPANSIN 11 255 - -
Cma04g00107 255 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cma04g00107 255 Gene3D - 21 159 IPR036908 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00107 Cma-Chr4:526955 Cma04g01668 Cma-Chr4:8389926 1.73E-142 dispersed
Cma15g00164 Cma-Chr15:757817 Cma04g00107 Cma-Chr4:526955 1.77E-152 wgd
Cma04g00107 Cma-Chr4:526955 Cma04g01067 Cma-Chr4:5503188 4.54E-166 wgd
Cma04g00107 Cma-Chr4:526955 Cma04g02865 Cma-Chr4:19076901 1.52E-150 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00107 - K20628 csv:101209633 476.478