Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00110 ATGAATGAGGGGTTTTCTCTTGAAGATCGAGATAAAGAAGCTATGGATCTTGAGCATGGAAACTGTTGGGACACTGACAAGGGTTCTTGGAAAACGGTTCTTGTATTGGCCTATCAAAGTCTTGGCGTCGTCTATGGCGATTTGAGCATCTCTCCGCTCTACGTTTACAGAAGCACTTTTGCTGAAGACATCCAACATTCAGAGACCAATGAAGAAATCTATGGTGTTCTGTCATTTGTCTTCTGGACTCTCACTATTGTCCCCCTTTTCAAATACGTCTTCGTAGTTCTCAGAGCGGATGACAATGGCGAAGGTGGGACTTTTGCTCTGTACTCGTTAATTTGCAGACATGCCAAAGTGAGCCTTCTTCCCAACAGACAAGTTGCAGATGAAGCACTTTCCACTTATTTACTTGAACATCCACCGGAGAAGAAGAAGCAATCGAAGGTTAAATTGCTGCTGGAGAAGCACAGTGCTCTGCACACTGCCTTGTTGATTCTTGTTCTTGTTGGGACTTGTATGGTGATTGGAGATGGGCTTCTCACTCCAGCCATTTCTGTTTTCTCAGCTGTTTCTGGACTTGAGTTATCCATGACCAAGGCTCACCATCAGTATGCAGTGGTTCCAATCACATGCTTTATCTTGGTTTGTTTATTTGCACTTCAACACTATGGCACGCATCGTGTTGGCTTCTTCTTCGCTCCCGTTGTATTGATATGGCTACTCTGCATCAGTACCCTTGGCATATACAATATTATACAATGGAATCCACATGTTTATCAGGCTCTTTCACCGTATTACATGTTCAAGTTTTTGGAGAAGACAAGGAAGAGCGGTTGGATGTCGTTGGGCGGAATATTGTTGTGCATAACAGGCTCAGAAGCAATGTTTGCTGATCTTGGTCACTTCTCATACACTGCAATACAGATTGCTTTCACCTTTCTGGTGTATCCAGCGCTCATATTGGCATACATGGGCCAAGCTGCTTACTTATCTCAACATCACACCACCACCAACAATATTGGCTTCTACGATTCTGTTCCAGAGAGTGTGAGATGGCCGGTGCTTATAATTGCTATACTTGCATCAGTTGTCGGAAGCCAAGCAATCATCAGTGGAACATTCTCCATTATTAACCAGAGCCAGTCCCTTGGCTGCTTCCCTAAGGTGAAGGTTGTTCATACTTCTGATAAGATCCATGGCCAAATCTACATTCCGGAGATCAATTGGGCTCTTATGATTCTCTGTGTTGCTGTTACCATTGGATTTAGAGACATAAAACACCTCGGAAATGCATCGGGTCTAGCTGTAATGACTGTGATGCTTGTGACAACTTGTCTTACATCTTTAGTGATTGTTCTCTGTTGGAACAAAACTCCACTTTTGGCTCTCTCCTTTTTGATCTTCTTTGGGTCTGTTGAATTGCTCTACTTCTCAGCTTCACTCACCAAGTTCAGGGAGGGCGCTTGGCTCCCCATTCTTTTAGCTCTGTTCCTCATGACCATTATGTTTGTTTGGCACTATGCAACCATCAAGAAGTATGAATATGATCTGCACAACAAGGTTTCATTAGAATGGTTGCTAGCATTGGGACCAAGCCTCGGGATTGCTCGTGTCCCTGGCATCGGATTAGTCTTCACTGATCTCACCTCTGGTATTCCTGCCAACTTCTCCCGGTTCGTCACTAACCTCCCAGCATTTCATCGCATCCTTGTCTTTGTGTGTATAAAGTCGGTACCAGTTCCTTTTGTACCTCCTGCTGAGCGGTATCTTGTTGGACGAGTAGGCCCAGCAGCACATCGGTCATACCGGTGCATTGTTCGATATGGCTACCGCGATAATCACCAGGATGTGGATTCGTTTGAATCTGAATTAGTCAAGAAACTGGCAGACTTTATCAGCTATGACTGGTACAGAAAACAAAGAGGCAACTCTAGCAGTGAGGACGATGCATCACGTTCAAATGAATCAACAAGTGAGCGTAGGCTGGCTGTGATTGGAACCGTAGCATTTGCAGGCGCATCTGCTTATGAGGAGACTATGCAGCCTGCAAGCGGATCAGTCGGATTCCAAACTGTCGACAGCATCACTGATGTGATCGAAATGGAGCCACTGGGAGAAAAAAAGAGAGTCAGGTTTGCTATAGACGATGATTTTGAAGGTGACTCCCAAGCTGAAACAGAAGCCCTTCTGCATGAAGAGCTAGAAGATCTTGTAGCAGCCCAGCAATCAGGGACGGCGTTCATTCTCGGGCATTCACATGTCCGAGCTAAACAGGGATCGTCTCTGTTGAAGAGACTGGCTATTAACTATGGCTATAACTTTCTGAGAAGGAACTGCAGAGGCGCAGACGTTGCTCTTAAGGTGCCACCAGTGTCTCTTCTTGAAGTTGGCATGGTTTATGTTGTATAA 2412 45.07 MNEGFSLEDRDKEAMDLEHGNCWDTDKGSWKTVLVLAYQSLGVVYGDLSISPLYVYRSTFAEDIQHSETNEEIYGVLSFVFWTLTIVPLFKYVFVVLRADDNGEGGTFALYSLICRHAKVSLLPNRQVADEALSTYLLEHPPEKKKQSKVKLLLEKHSALHTALLILVLVGTCMVIGDGLLTPAISVFSAVSGLELSMTKAHHQYAVVPITCFILVCLFALQHYGTHRVGFFFAPVVLIWLLCISTLGIYNIIQWNPHVYQALSPYYMFKFLEKTRKSGWMSLGGILLCITGSEAMFADLGHFSYTAIQIAFTFLVYPALILAYMGQAAYLSQHHTTTNNIGFYDSVPESVRWPVLIIAILASVVGSQAIISGTFSIINQSQSLGCFPKVKVVHTSDKIHGQIYIPEINWALMILCVAVTIGFRDIKHLGNASGLAVMTVMLVTTCLTSLVIVLCWNKTPLLALSFLIFFGSVELLYFSASLTKFREGAWLPILLALFLMTIMFVWHYATIKKYEYDLHNKVSLEWLLALGPSLGIARVPGIGLVFTDLTSGIPANFSRFVTNLPAFHRILVFVCIKSVPVPFVPPAERYLVGRVGPAAHRSYRCIVRYGYRDNHQDVDSFESELVKKLADFISYDWYRKQRGNSSSEDDASRSNESTSERRLAVIGTVAFAGASAYEETMQPASGSVGFQTVDSITDVIEMEPLGEKKRVRFAIDDDFEGDSQAETEALLHEELEDLVAAQQSGTAFILGHSHVRAKQGSSLLKRLAINYGYNFLRRNCRGADVALKVPPVSLLEVGMVYVV 803
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 538770 543206 + CmaCh04G001100.1 Cma04g00110 291191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00110 803 Pfam K+ potassium transporter 38 613 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00110 803 PANTHER POTASSIUM TRANSPORTER 2 15 803 - -
Cma04g00110 803 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 15 803 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00110 803 TIGRFAM kup: potassium uptake protein 36 802 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01072 Cma04g00110 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00110 Cma-Chr4:538770 Cma14g00637 Cma-Chr14:3160662 0 dispersed
Cma04g00110 Cma-Chr4:538770 Cma04g01072 Cma-Chr4:5531269 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00110 K03549 - csv:101211022 1471.83