Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00113 ATGCCAGCTGAATGTCCAAAGAAAGATGGAGATAGATTAGAGGAGTTAGGGAAGAAGAGAAAGCGAGCGGTATCATCAAATATTCCTCCACGACACACGCTGCACGGTCCTCCTAGGACTCTTAACACCATTACTCCATGCGCAGCCTGCAAGCTCCTAAGAAGAAGATGTGGTCAACAATGCCCCTTCGCTCCATATTTCTCCCCTCACGAGCCTCACAAGTTCGCCTCGGTTCACAAGGTCTTCGGCGCTCGTAATGTCTCGAAGATGCTCATGGAAGTTCCGAAAAATGAAAGAGATAATACTGCGAACAGTCTAATTTATGAAGCTAATGTGAGGCTGAGAGATCCTGTGTATGGCTGCATGGGCGCCATTTCATGTCTACAACACCAAGTCCAAGCGTTGCAAGCTACGCTCACTGCAGTTAGAGCTGAGATACTGAGATGCAAATATAGACAAGGTAATATGGTTTCCATTGACGTACAGCCACCGCCACCGCCACCGCCTCATCAGGATGCTTCTTCCACTTCCTCCACCTTGTACAACCGGCCCACGGTGGCTGCTGATTCATCCTTTTTCGCATTTTAG 588 48.64 MPAECPKKDGDRLEELGKKRKRAVSSNIPPRHTLHGPPRTLNTITPCAACKLLRRRCGQQCPFAPYFSPHEPHKFASVHKVFGARNVSKMLMEVPKNERDNTANSLIYEANVRLRDPVYGCMGAISCLQHQVQALQATLTAVRAEILRCKYRQGNMVSIDVQPPPPPPPHQDASSTSSTLYNRPTVAADSSFFAF 195
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 551388 552252 - CmaCh04G001130.1 Cma04g00113 291194
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00113 195 ProSiteProfiles LOB domain profile. 45 146 IPR004883 -
Cma04g00113 195 MobiDBLite consensus disorder prediction 158 180 - -
Cma04g00113 195 MobiDBLite consensus disorder prediction 19 38 - -
Cma04g00113 195 Pfam Lateral organ boundaries (LOB) domain 46 142 IPR004883 -
Cma04g00113 195 PANTHER STRUCTURE-SPECIFIC ENDONUCLEASE SUBUNIT SLX1 HOMOLOG 27 154 - -
Cma04g00113 195 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 27 154 - -
Cma04g00113 195 Coils Coil 125 145 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00113 Cma15g00157 CCT
Cma04g00113 Cma15g00157 ECH
Cma04g00113 Cma04g01074 ECH
Cma04g01074 Cma04g00113 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00113 Cma-Chr4:551388 Cma15g00157 Cma-Chr15:729704 1.02E-66 dispersed
Cma04g00113 Cma-Chr4:551388 Cma04g01074 Cma-Chr4:5545442 8.53E-84 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34739 PF03195 LOB 1.60E-38 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00113 - - cmax:111485427 397.512