Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00125 ATGGATGAAATCCAAACCCCATTTGATTCCAACTCTTGTTGGAAATACCCACTTGGAGATTTTGGGGTTTTGCTGATGGAAACTGCCGATTGGCTCTGTTTTCCAGGGAAGAATGAGAAGAAACGGAGGTTTTCGAGGAAAACCCCCCATGGGTTTGTTTCTTCTCTTCATTTTGGATTAGTTTTGTTCTTTTTTGTGGTCAGTTTTGTCTGTGTTCAGCCTGTTCTGAGCCAGGATTGGGACGGCGTGGTTGTGACTCAAGCTGATTTTCAATCCCTTCAGGCATTCAAGCAAGAACTTGATGATCCTAAAGGGTTCTTGAAGAGTTGGAATGATAGTGGATTTGGTGCTTGTTCTGGTGGCTGGGTTGGGATTAAATGCGCTAAGGGACAGGTTATTGTGATACAGCTTCCATGGAAGGGATTAGGAGGTAGAATCACTGAGAAGATTGGCCAACTTCAGGCCCTTAGGAAGCTCAGTTTACATGACAACTTCATTGCTGGATCCATCCCTTCTTCATTGGGGCTTCTTCCAAATCTTCGAGGCGTTCAGTTGTTCAACAATCGATTTTCGGGTTCGATCCCGCCTTCATTGGGGCGTTGTCCTCTGCTTCAAACTCTTCACATTAGTAATAATTTGCTCACCGGAACAATCCCATCGAGTTTGGCTAACTCCACCAAGCTCTATTGGCTTAACTTGAGCTATAACTCGTTTTCCGGTCCGATCCCGATGAGTCTCACTCGATCGGTGTCCCTTACTTTCCTCGCTCTTCAACACAACAATCTCTCAGGCAGCATTCCCGACTCGTGGGGAAGCAATGCCACCGAGCGAAACCGGGTGTTTCAGCTCAAGTCTTTGACTCTTGATGACAACCTCCTCTCAGGTACCATACCAACTTCTTTAAGCAAGTTAAGTAAGGTTCAAGTGGTTTCCCTTGGCCACAATAGGCTAAATGGTGGCCTTCCTGATGAACTTAGTAGGCTTTCTTTGCTCAAAACTTTGGATGTCTCTAATAATTTCCTTAATGGAAGCATACCCCAAAGTTTTGATGGATTGAGAAATCTGTCTGTTCTCAACTTGAGTAGAAACAGATTCAATGGTCATATACCTTCAACTTTTGGGAACATTTCAACACTTACTCAACTTGATCTATCTCAGAACAATCTAAATGGAGAAATCCCAGCTTCTCTTGCTGATTTGCAAGCTCTTCAATCCTTAAACGTCTCGTATAACAACCTTTCGGGTTCAGTACCGGGGGCCCTTGCCGAAAAATTCAATGCGAGTTCCTTTGTTGGGAACATTCAGCTCTGTGGGTTCAGTGGTGCGATTCAGTGCCTGTCCCCTGCTCCTTCTCAAGAAGTTCCTGCTCCTCCGCTGGAAAGTTTGACATCCCGACAACGGAAGTTAAGTACTAAAGATATAATCCTTATAGCAGCAGGATCCCTCCTTGTAGTATTGGTTATAGTTTTCTTTGTACTGCTGTGCTGCTTGATAAGGAAAAGAGCTGCTTCAAAAGAAAAGGATGGCGGTGGGGCTGAAGCAGCCGGGGCTGTGAGGACCGAAAAGGGCGTCCCTCCGACGAGCAGTGAAGTTGAAGCGGGAGGGGATGCTGGAGGAAAGCTCGTCCATTTCGAGGGGCAAACGGTGTTCACAGCAGATGATCTTTTGTGTGCAACAGCAGAAATAATGGGAAAGAGTACTTATGGGACTGTTTACAAGGCTACATTGGAGGATGGAAGTCAAGTTGCAGTAAAGAGGTTGAGAGAGAAGATCACTAAGAGCCAGAAGGAATTTGAAGCAGAGGTCAATATACTTGGAAAGATCAGGCATCCAAATCTTCTAGCTTTGAGGGCTTATTACTTGGGACCTAAAGGAGAAAAGCTTCTTGTTTTCGATTACATGCCGAACGGGAGCCTTGCAACGTTCCTGCACGCTCGTGGACCGGATACATTCATCGACTGGCCGACGAGGATGAAGATAGCTCAGGGTATGACTCGTGGCCTGTGTCACCTTCACGCACACGAGAACAGCATCCATGGAAACCTAACATCCAGCAACATTCTACTTGATGAGTACATAAATGCTAAGATTGCAGATTTTGGCCTGTCAAGGTTGATGACTGCTGCTGCAGGCTCAAATGTGATAGCAACTGCAGGGGCACTCGGGTACCGAGCGCCCGAGCTCTCAAAGCTGAAGAAAGCAAATACAAAAACTGACATTTACAGCCTGGGAGTGATCATATTGGAACTCCTGACAGGAAAGTCCCCGGGCGAAGCCATGAACGGAGTCGATTTGCCACAATGGGTTGCATCAATTGTCAAAGAGGAGTGGACTAATGAAGTTTTCGATATGGAACTAATGAGGGATGCCTCTACCATTGGAGATGAGTTGCTGAACACGCTAAAACTCGCTTTGCATTGCGTCGATCCATCACCATCGGCAAGACCAGAAGTTCAACAAGTTCTACAACAACTGGAGGAGATTAGGCCAGAAACTGCTCCCAGTTCTGGGGACGACGGAGCTGGAGGAGGAGGAGGACCCCCTTCAACAAGTGAGTGA 2559 46.42 MDEIQTPFDSNSCWKYPLGDFGVLLMETADWLCFPGKNEKKRRFSRKTPHGFVSSLHFGLVLFFFVVSFVCVQPVLSQDWDGVVVTQADFQSLQAFKQELDDPKGFLKSWNDSGFGACSGGWVGIKCAKGQVIVIQLPWKGLGGRITEKIGQLQALRKLSLHDNFIAGSIPSSLGLLPNLRGVQLFNNRFSGSIPPSLGRCPLLQTLHISNNLLTGTIPSSLANSTKLYWLNLSYNSFSGPIPMSLTRSVSLTFLALQHNNLSGSIPDSWGSNATERNRVFQLKSLTLDDNLLSGTIPTSLSKLSKVQVVSLGHNRLNGGLPDELSRLSLLKTLDVSNNFLNGSIPQSFDGLRNLSVLNLSRNRFNGHIPSTFGNISTLTQLDLSQNNLNGEIPASLADLQALQSLNVSYNNLSGSVPGALAEKFNASSFVGNIQLCGFSGAIQCLSPAPSQEVPAPPLESLTSRQRKLSTKDIILIAAGSLLVVLVIVFFVLLCCLIRKRAASKEKDGGGAEAAGAVRTEKGVPPTSSEVEAGGDAGGKLVHFEGQTVFTADDLLCATAEIMGKSTYGTVYKATLEDGSQVAVKRLREKITKSQKEFEAEVNILGKIRHPNLLALRAYYLGPKGEKLLVFDYMPNGSLATFLHARGPDTFIDWPTRMKIAQGMTRGLCHLHAHENSIHGNLTSSNILLDEYINAKIADFGLSRLMTAAAGSNVIATAGALGYRAPELSKLKKANTKTDIYSLGVIILELLTGKSPGEAMNGVDLPQWVASIVKEEWTNEVFDMELMRDASTIGDELLNTLKLALHCVDPSPSARPEVQQVLQQLEEIRPETAPSSGDDGAGGGGGPPSTSE 852
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 592508 595553 + CmaCh04G001250.1 Cma04g00125 291206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00125 852 Gene3D Ribonuclease Inhibitor 86 245 IPR032675 -
Cma04g00125 852 SUPERFAMILY Protein kinase-like (PK-like) 561 829 IPR011009 -
Cma04g00125 852 SMART LRR_typ_2 328 351 IPR003591 -
Cma04g00125 852 SMART LRR_typ_2 352 375 IPR003591 -
Cma04g00125 852 SMART LRR_typ_2 400 423 IPR003591 -
Cma04g00125 852 SMART LRR_typ_2 177 201 IPR003591 -
Cma04g00125 852 SMART LRR_typ_2 153 176 IPR003591 -
Cma04g00125 852 SUPERFAMILY L domain-like 126 421 - -
Cma04g00125 852 Gene3D Transferase(Phosphotransferase) domain 1 635 838 - -
Cma04g00125 852 MobiDBLite consensus disorder prediction 508 534 - -
Cma04g00125 852 Pfam Leucine rich repeat N-terminal domain 88 127 IPR013210 -
Cma04g00125 852 Pfam Leucine rich repeat 203 262 IPR001611 GO:0005515
Cma04g00125 852 Pfam Leucine rich repeat 353 413 IPR001611 GO:0005515
Cma04g00125 852 Pfam Leucine rich repeat 282 339 IPR001611 GO:0005515
Cma04g00125 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 53 833 - -
Cma04g00125 852 Gene3D Phosphorylase Kinase; domain 1 563 634 - -
Cma04g00125 852 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 53 833 - -
Cma04g00125 852 CDD STKc_IRAK 563 828 - -
Cma04g00125 852 Gene3D Ribonuclease Inhibitor 246 344 IPR032675 -
Cma04g00125 852 MobiDBLite consensus disorder prediction 829 852 - -
Cma04g00125 852 ProSiteProfiles Protein kinase domain profile. 557 828 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00125 852 Gene3D Ribonuclease Inhibitor 345 439 IPR032675 -
Cma04g00125 852 Pfam Protein tyrosine and serine/threonine kinase 560 825 IPR001245 GO:0004672|GO:0006468
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00125 Cma04g01090 ECH
Cma04g01090 Cma04g00125 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00125 Cma-Chr4:592508 Cma03g00702 Cma-Chr3:5732636 4.18E-17 dispersed
Cma08g00063 Cma-Chr8:361202 Cma04g00125 Cma-Chr4:592508 1.76E-15 dispersed
Cma17g01238 Cma-Chr17:8497906 Cma04g00125 Cma-Chr4:592508 2.07E-13 dispersed
Cma19g00003 Cma-Chr19:27945 Cma04g00125 Cma-Chr4:592508 5.01E-09 dispersed
Cma14g00042 Cma-Chr14:179836 Cma04g00125 Cma-Chr4:592508 0 wgd
Cma04g00125 Cma-Chr4:592508 Cma04g01090 Cma-Chr4:5610847 0 wgd
Cma04g00125 Cma-Chr4:592508 Cma06g00213 Cma-Chr6:1087094 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68455 PF07714 PK_Tyr_Ser-Thr 2.10E-40 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00125 - - csv:101214895 1355.89