Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00128 ATGGTTAAAAGACGTTTATATGAATTCAAGCATCCATTCAATGATTACCCTTTCGAGGCGATATGCTGTGGTTCTTGGCAAGCTGCAGAGAAAATAAGAATTAGGAATGGTTCAATCACCCTTCATTTAGTGAATGATCAGTTCATGATTCTGGAAAGAGGTCCTTACACAGACTTCCGCATTAGGTCGAGACAAGCGACTTCATCTGACTGCACCTGTTTTCTACGACCTGGTGTTGATATTTGTGTCCTCTCTTCCTCTCGCAGCACGGAGAATACTGATGTGCAAGGTTCAGAGCCTGTGTGGATCGATGCTAAAATAAGCTCAATTGAGCGGAAGCCTCATGATTCTGGGTGTTCATGCCAGTTTTATGTCCAGTTATATGCTGCTGATAAAAAACCCCTTGGTTCAGAGAAGGGATCGCTTTGTAAAGAAATCATAGCAATGGGAATTGATCAGATCTTTGTACTTCAAAAGGTTAGGAAACACTTCTGTGAAGGTCAACACTACCGATGGGATTTCTCTGAGGACTGCGCTCTGTTGCCAAAAACGAAACTGCTTCTGGGAAAATTTCTGTCCGATCTTTCTTGGTTAGTAGTAACATCAGCATTGAAACATGTCACTTTTGATGTAAGATCAGTGGATAACAAGATCTTGTACCAAGTGTTGGAAAGTAATCAGAAGGGCACTTCAGTAGCTTCTGACAAGATTTTAAACGTTGTAAACTTTAGAAATGATGAAGGTATGTTTATTCCAATAATACATCAGCTAAATTCATCTGATAGGATTGAGATGTCTCCTGCAGATGATGCATTTGACAGTCAATTGCACTCATTTACTGATCTTATGGACTTGAGGCGTTCAAAACGCCGTAATGTCCAACCCGATCGTTTTCTTGGCTGTGATAGTATCAATGAATCAGAAATTGACTACAGCGGAACCAGGATATATAAAACAGAGCAATTGAATGATGATGATGAGATGACATTACCACTTGCTTACCTGTTTGCCACGAATGCAGGTCCTTCAAAAGTAAAGATGGAAAATGAAAGCAACAATCATTTCAATCAATTGAGTGTACGTGATGATCTCTCTGATTTCAAGAGCAGACTAAGATCATTGGAAATGAGTGATGAAGTAGAAGATAAAAATCAACTTGCTATAGTTCCTGTAATTGATGAACAGCCAATAGCATCTGATCCATATCCTGATGATGCCAATGGTTGTGGTAACTTTACGAAACAGATTACTGAAATGTCAGCTAGGTATTACTACATTAACAATAAACGCAAAGTCCGGAAAAGAAACTCTTCAGACTTTGAAGACGAGAACTTTGAGAATGGTAGCTGGGGAAAGGCTTTGAGTAGTAAAGGTAGGAAGACCAGGTATCATTCCATATGTTATAAAGAGGATGGTTCTCCTAAAGAAAGAACTTGGCAGAAACGGTCCTTAGGTGCAGGTGCATACAAGGATTTGATCAATTCCTTCCTGAAGAATATTGACTCAACAATTCAAAAAGAAGAGCCACAGATAATTGATCAATGGAAAGAATTTAAGAACAAAACTTCCTTGGATAAGAGGAACGAGATGGAACTGCCCTCTAATGAGGAGAAGGAAGAAAACTCTGAGATTGAAATGCTGTGGAGAGAGATGGAAATATCCCTTGCCTCAAGTTACCTTATTGATGCTAACCAGGGTTTTAGTAATGGAACATCAGTGGAGCCCGAACAGAAAGAAAGCAAATGGTGCCAGCATGAGTTCAAGTTGAATGAAGAGATAGGGATGCTCTGCCATATATGTGGCTTTGTGAGCACTGAAATTAAAGATGTCTCAGCACCATTTATGCAACACATGAGCTGGAATTCCGAAGAGCGGAGGATTGAAGAAAAAGATGAGCACAATACTGACGATGAGGAGGAGATGAATATTTTCTGTGGCCTGCCTTCTTCTGATGGTACCTTATCGGAAGAAAATGACAATGTCTGGGCCTTGATCCCTGAATTCAGAAGGAAATTACATCTCCACCAAAAAAAAGCATTCGAGTTCCTGTGGAAAAATGTTGCTGGTTCTATGGTTCCAGCTCTCATGGATCAAGCATCTCGTAAAATAGGTGGTTGTGTGATATCCCATACACCAGGAGCTGGAAAAACCTTTCTGATCATCTCATTCCTCGTTAGTTACTTGAAACTGTTTCCAGGGAAAAGGCCCCTTGTCCTTGCTCCAAAGACTACTCTTTATACATGGTATAAGGAATTTATTAAGTGGGAAGTTCCAGTACCAATTCATCTAATACATGGTCGTAGAACCTACCGAGTTTTCCGGTCGAACTCAAAACCAGTCACGTTTGCTGGAGGTCCAAGGCCGACAGATGATGTCATGCACATCTTGGATTGCTTGGAAAAGATAAAGAAGTGGCATGCACATCCAAGTGTTCTTGTTATGGGCTATACATCATTTCTTACATTAATGAGGGAAGATGCAAAATTTGCTCACAGAAAGTATATGGCCAAAGTTTTGCGCCAAAGCCCCGGTATCCTAATATTGGACGAGGGGCATAACCCCAGGAGTACTAAGTCCAGGCTGAGGAAGGTTTTGATGAAAGTTGAAACAGACCTCAGAATACTCCTCTCAGGTACCTTGTTTCAAAATAATTTCTGTGAATATTTCAATACTCTTTGTTTGGCAAGACCTAGGTTTGTGAATGAAGTGTTGAAGAAACTAGATCCCAAATTCAAGAGGAAAAAAAGAAAAGCTCCACACCTGCAGGAAGCTCGGGCAAGGAAATTCTTTTTAGATAAGATAGCTCGGAAAATCGATGCAGGTGATGGAGAAGAGAGGCAGGAAGGTCTGAACATGCTAAGAAATATGACAAGTGCGTTTATTGATGTTTATGAAGGTGGAAGTAAGGATGGCCTTCCTGGTTTACAAATTTACACCTTACTAATGAACACAACTGACATACAGCAACAAATTTTGAATAAACTTCATAAGATAATGGCTAAATACCCTGGATATCCCCTTGAGTTAGAGCTCCTCATAACTCTTGGTTCAATCCATCCTTGGTTAGTAAAAACTGCGGTTTGTGCTAGCAAATTTTTCAGTGAGAGGGATCTGATGGAACTAGAAGGATACAAATTTGATTTGAGGAAAGGTTCAAAGGTGATGTTTGTTCTGAATCTTGTGTACCGTGTCGTCAAGAAGGAAAAAATTCTAATCTTCTGCCACAACATTGCACCCGTCAAACTATTCATAGAGCTGTTTGAGAACGTATTTAGGTGGAAGAGAGGCCGAGAAATCTTGGCCCTCACAGGGGACCTTGAGCTATTCGAACGAGGAAAAGTGATGGATAAGTTTGAAGATCCCTTAGGGCCATCCAAAGTCTTGCTTGCTTCAATTACTGCTTGCGCAGAAGGCATTAGTTTGACTGCAGCTTCACGAGTCATCTTACTAGACTCCGAGTGGAATCCTTCGAAGACAAAGCAGGCCATCGCTCGAGCTTTCCGTCCAGGCCAGCTTAAGGTGGTCTATGTCTATCAACTACTGGTAACTGGCACATTGGAAGAGGACAAGCACAAGAGAACTACATGGAAGGAATGGGTGTCAAGTATGATTTTCAGTGAGGCGTTTGTGGAGGATCCTTCTAAATGGCAAGCAGAAAAGATTGAAGATGAAGTTCTTAGGGAGATGGTGGAGGAAGATAGAGTCAAATCGTTTCATATGATTATGAAAAACGAGAAGGCTTCTACTGTGATCAGAGAGAAGGATTAG 3768 40.84 MVKRRLYEFKHPFNDYPFEAICCGSWQAAEKIRIRNGSITLHLVNDQFMILERGPYTDFRIRSRQATSSDCTCFLRPGVDICVLSSSRSTENTDVQGSEPVWIDAKISSIERKPHDSGCSCQFYVQLYAADKKPLGSEKGSLCKEIIAMGIDQIFVLQKVRKHFCEGQHYRWDFSEDCALLPKTKLLLGKFLSDLSWLVVTSALKHVTFDVRSVDNKILYQVLESNQKGTSVASDKILNVVNFRNDEGMFIPIIHQLNSSDRIEMSPADDAFDSQLHSFTDLMDLRRSKRRNVQPDRFLGCDSINESEIDYSGTRIYKTEQLNDDDEMTLPLAYLFATNAGPSKVKMENESNNHFNQLSVRDDLSDFKSRLRSLEMSDEVEDKNQLAIVPVIDEQPIASDPYPDDANGCGNFTKQITEMSARYYYINNKRKVRKRNSSDFEDENFENGSWGKALSSKGRKTRYHSICYKEDGSPKERTWQKRSLGAGAYKDLINSFLKNIDSTIQKEEPQIIDQWKEFKNKTSLDKRNEMELPSNEEKEENSEIEMLWREMEISLASSYLIDANQGFSNGTSVEPEQKESKWCQHEFKLNEEIGMLCHICGFVSTEIKDVSAPFMQHMSWNSEERRIEEKDEHNTDDEEEMNIFCGLPSSDGTLSEENDNVWALIPEFRRKLHLHQKKAFEFLWKNVAGSMVPALMDQASRKIGGCVISHTPGAGKTFLIISFLVSYLKLFPGKRPLVLAPKTTLYTWYKEFIKWEVPVPIHLIHGRRTYRVFRSNSKPVTFAGGPRPTDDVMHILDCLEKIKKWHAHPSVLVMGYTSFLTLMREDAKFAHRKYMAKVLRQSPGILILDEGHNPRSTKSRLRKVLMKVETDLRILLSGTLFQNNFCEYFNTLCLARPRFVNEVLKKLDPKFKRKKRKAPHLQEARARKFFLDKIARKIDAGDGEERQEGLNMLRNMTSAFIDVYEGGSKDGLPGLQIYTLLMNTTDIQQQILNKLHKIMAKYPGYPLELELLITLGSIHPWLVKTAVCASKFFSERDLMELEGYKFDLRKGSKVMFVLNLVYRVVKKEKILIFCHNIAPVKLFIELFENVFRWKRGREILALTGDLELFERGKVMDKFEDPLGPSKVLLASITACAEGISLTAASRVILLDSEWNPSKTKQAIARAFRPGQLKVVYVYQLLVTGTLEEDKHKRTTWKEWVSSMIFSEAFVEDPSKWQAEKIEDEVLREMVEEDRVKSFHMIMKNEKASTVIREKD 1255
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 601173 606792 + CmaCh04G001280.1 Cma04g00128 291209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00128 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 971 1231 IPR027417 -
Cma04g00128 1255 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 697 898 IPR014001 -
Cma04g00128 1255 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 18 1249 IPR044567 GO:0080188
Cma04g00128 1255 CDD SF2_C_SNF 1052 1181 - -
Cma04g00128 1255 Gene3D - 1027 1245 IPR027417 -
Cma04g00128 1255 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 658 900 IPR027417 -
Cma04g00128 1255 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2 18 1249 - -
Cma04g00128 1255 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 1057 1241 IPR001650 -
Cma04g00128 1255 Pfam SNF2-related domain 672 955 IPR000330 GO:0005524|GO:0140658
Cma04g00128 1255 Pfam Helicase conserved C-terminal domain 1053 1169 IPR001650 -
Cma04g00128 1255 SMART helicmild6 1085 1170 IPR001650 -
Cma04g00128 1255 SMART ultradead3 668 903 IPR014001 -
Cma04g00128 1255 Gene3D - 650 937 IPR038718 -
Cma04g00128 1255 CDD DEXHc_ATRX-like 672 937 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00128 Cma15g00145 CCT
Cma04g00128 Cma04g02891 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00128 Cma-Chr4:601173 Cma19g00387 Cma-Chr19:4566277 5.26E-92 dispersed
Cma04g00128 Cma-Chr4:601173 Cma02g01579 Cma-Chr2:8969120 9.68E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34740 PF00176 SNF2_N 3.00E-17 CL0023 Cma TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00128 K10875 - csv:101215377 2195.24