Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00134 ATGGGAGGCAGTTCGCCCTGTGCGTCGTGCAAACTCCTCCGGCGACGGTGCGCAAAAGAGTGCATTTTTGCCCCATATTTCCCCTCCGATGACCCCCACAAATTTGCTATTGTTCATAAGGTTTTTGGTGCCAGCAATGTCAGCAAAATGTTGCAGGAACTGCCGGTGCAACAAAGAGGCGACGCCGTGATGAGCCTAGTTTATGAGGCAACTGCAAGAGTGAGGGACCCAGTTTATGGTTGTGTAGGGGCAATTTCGTACTTACAAAACCAAGTTTCTCAGCTTCAAATGCAATTAGCTGTTGCTCAATCTGAGATACTTTGCTTTCAAATGCAACAAGACCACCTTGTTTTCCCAAATTGCCCTCAGATCTACTCCGACGAGAAACCGCCGTCTCTTCTACTCCCGCCGCCGTCTCCTCCGCGGTCTCAGTGCTTCAACTTTGCTTCCTCTTCCAATGTAATCTATGACACCATTTTTGGACATGACATTGTTTCTTAA 501 48.1 MGGSSPCASCKLLRRRCAKECIFAPYFPSDDPHKFAIVHKVFGASNVSKMLQELPVQQRGDAVMSLVYEATARVRDPVYGCVGAISYLQNQVSQLQMQLAVAQSEILCFQMQQDHLVFPNCPQIYSDEKPPSLLLPPPSPPRSQCFNFASSSNVIYDTIFGHDIVS 166
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 631586 632086 - CmaCh04G001340.1 Cma04g00134 291215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00134 166 Coils Coil 85 105 - -
Cma04g00134 166 Pfam Lateral organ boundaries (LOB) domain 6 103 IPR004883 -
Cma04g00134 166 ProSiteProfiles LOB domain profile. 5 106 IPR004883 -
Cma04g00134 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 2 122 - -
Cma04g00134 166 PANTHER LOB DOMAIN-CONTAINING PROTEIN 12-LIKE 2 122 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00134 Cma04g01102 ECH
Cma04g01102 Cma04g00134 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00134 Cma-Chr4:631586 Cma15g00433 Cma-Chr15:1939997 1.73E-49 dispersed
Cma13g00447 Cma-Chr13:4990036 Cma04g00134 Cma-Chr4:631586 3.66E-60 transposed
Cma19g01089 Cma-Chr19:9065665 Cma04g00134 Cma-Chr4:631586 7.15E-48 transposed
Cma15g00157 Cma-Chr15:729704 Cma04g00134 Cma-Chr4:631586 1.81E-46 wgd
Cma02g00725 Cma-Chr2:4403586 Cma04g00134 Cma-Chr4:631586 6.09E-67 wgd
Cma20g00329 Cma-Chr20:1612823 Cma04g00134 Cma-Chr4:631586 8.22E-58 wgd
Cma04g00134 Cma-Chr4:631586 Cma04g01102 Cma-Chr4:5668634 1.15E-100 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34741 PF03195 LOB 4.30E-42 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00134 - - csv:101204801 302.753