Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00137 ATGGCGGGTTTTCTTCTACTTTTCTTATTCTTGTTCACTAATTCTGTAGCCGAAGAAGTATCGTTCGGTATCAAGCAACATCTATCGACCGTTACTAGATACGGTGCTTCGAAAGGTGGTCATGATAGTAACTATGCTTCCGCGCCTGATGGATGTGTTCCTATTCATTTAAATCTTGTGGCCAGGCATGGAACTCGTGCTCCAACCAAAAAACGTATTCGAGAGTTGAACAGCTTGGAAAGTCAATTGGAGATGCTTATAAGAGAGGCAGTAGAAAATGGGTTGTCTCTGCATAAACTTCCTTCCTGGTTGAAGTTATGGAAATCTCCTTGGAGAGGAAAAGTGAAAGGTGGAGAATTAATTCCTAAAGGAGAGGAAGAATTGTATGATCTTGGAATCCGAACAAGAAAAATGTTCCCTGACTTGTTTAGCGATGATTATCACCCGGAAGTTTATACCATTAAAGCAACTCAGGTTCCTCGAGCGTCAGCTAGTGCTGTGGCATATGGTATGGGGCTATTTAGTGGACGAGGAAGCCTTGGATCAGATCATCATCGAGCCTTTTCTGTCATCAGCGAGAGCCGTGCCAGTGATACCATGCTTAGGTTTTTTGATTGTTGTCAAAGATACGAGGATTATAGGAAGTATCAGGAACCTGCTGTTGACAAGCTCAAAGAACCTGTACTTGATGATATAACTAAGTTACTCAGAGGCATCCTTATTGGACATAACGGATCAAGCTTGTGGACTGTTCAGCCCTTCCGAGCTTGCAATCTTTGTCTACGTGCTCAGGTTGCTTTGTTGGAGTGGACGGATGATGTGGAGGTGTTTATATTGAAGGGTTATGGTAATTCATTAAACTATAAAATGGGAGTTCCTTTGTTGGCAGATATTGTTCAATCCATGGAGCAAGCTATCAAGGCCAAAGAAGAAAAGCAAATTCCTGGCAGCTACGAGAAGGCAAGACTTCGTTTTGCTCATGCCGAAACTGTGCTTCCATTCACATGTTTGCTCGGGCTCTTCCTTGAAGGACCTGATTTTAGAAAAATACAAACGGAGCAGCCTTTGGAACTTCCTCCACGGCCTCCAGCTACTAGAATATGGAAGGGGAGCGCTGTTGCACCTTTTGCTGGGAATAACATGCTTGTTCTCTATAACTGCCCCGCTAACTCGTCGGATCAGTACTTCGTGAGAGTTTTGCATAATGAAGAACCCATAGCAATGCCGGGTTGTGATGGTTCGGATTTTTGCTCCTTCAAAGACTTCAAGGAGAAAATTGTAGCACCTCATCTCAAGCATGATTTCAACACATTGTGCACTGCAAATCTTGAAGAACCTGTGTCGGAGCCTGAAACGATTTCATTTTATCTGGATCTTGAGATTGCATCTGTTTCACACGTCTTTGATTCAAAGATTAGACTCAACATTGAGCGTTTGGCATTTGCTTGGATGTTTTGTTTTACCACACAAGGCACGTGCTTCACCTTCTGTACTCCTAAATTATACAAGATTAGAATCCTTCAATTCTCTGAAATACTCTCTACTATGGCTTCCCATTCCCCTAATCTCGAGTGTCGGATGTACGAAGCCAAGTACCCCGAGGTCGACATGGCCGTCATGATCCAGGTCAAGAACATTGCTGACATGGGCGCTTACGTCTCTCTTCTCGAGTACAACAACATAGAGGGTATGATTCTCTTCTCCGAGCTCTCTCGCCGTCGTATTCGTAGTGTCAGCAGCTTAATTAGGGTCGGTCGAATCGAGCCCGTCATGGTCCTCAGGGTCGATAAGGAGAAGGGGTATATTGATTTGAGTAAGAGGAGGGTTTCTGAGGAGGATATTCAGGCATGTGAGGAGAGGTATAACAAGAGCAAGCTTGTTCACTCTATAATGCGCCATGTTGCTGAGACTGAAAATATTGATTTGGAGGACTTGTATATCCATGTTGGCTGGCCTCTATACCGGAAATATGGTCATGCTTTTGAGGCATTCAAGGTTATTGTAACTGATCCTGATACGGTGTTGAATTCTCTCACCCGTGAAGTCAAGGAAGCTGGTCCTGATGGACAAGAGGTAACTAAGGTAGTTCCCGCAATGTCTGAGGATGTAAAAGATGCGCTAATTAAAAATATTAGAAGAAGAATGACTCCTCAACCCTTGAAGGTTCGGGCTGATATTGAGATGAAGTGTTTCCAGTTTGACGGTGTTCTTCACATTAAGGAAGCAATGCGGAAAGCTGAGGCTGCTGGGAATGATGATTGTCCTGTTAAGATTAAATTGGTTGCTCCTCCACTCTATGTTCTTACGACCCAGACACTTGACAAGGAGCAAGGAATCACTGTTCTTGAAAAAGCAATCACGGCCTGCACGGAGGCAATCGAGCATCACAAGGGAAAGCTTGTAGTGAAGGAGGCACCTAGAGCGGTGAGTGAAAGAGACGACAAATTACTTGCTGAGCACATGGCGAAGCTACGACAAGACAATGAAGAGATTAGTGGCGATGAGGATAGTGAGGAAGAGGAAGACACGGGAATGGGAGAAGTCGATGTCGAAAATGCAGACGACGTCCGTGCTCTTTTTCTTCTCTCATCTCTCTCTGTATCTCACTCTCTCCTCTCTGATCCACGCTTCTGCTCATCAATGGCGGTTTCACTCCAAACCTTCATTCAAGAACGCAAAATCCCTTTCTTCTTCACCCTCTCCGTCCTTCTCTTTTGCTTTCTCATTCTCTTCTTCACCAACTCCTTTTCTCTCAACCCTCTCGTTCGTACTTACTCCGCTCTTCGATCCCCTTCTAAAACCCCATCTTCTTCTGGGGTTTATTCGGATTCTGTTCTTTCTCACGATCTTGATTCTTCTTCTTTGGCGGCGAATTTCACCTGGAAGCTCTGTAATGGCTCTGTGGCGGTTGATTTTGTTCCCTGTTTGGATAACTTCAAGGCGATTAAGGCTTTGCAGTCGAGGAAGCACATGGAGCACCGTGAACGGCATTGCCCTAGTCCCAGTCCCCGCTGTTTGATTCCTCTTCCGAGTGGTTATAAGGTGCCGGTTCCCTGGCCCAAGAGTAGGGACATGATTTGGTACGATAATGTTCCTCATGCGAAGCTTGTTGAATACAAGAAAGATCAACATTGGGTAGTTAAGTCGGGCGATTATCTTAACTTTCCTGGAGGAGGCACACAGTTCAAGGATGGAGTTGATCGCTACATTGACTTCATTCAGAAGACTTTATCGGACATTAAGTGGGGGAAGAACATCAGAGTTATTCTAGATGTTGGCTGTGGTGTTGCCAGCTTTGGTGGCTATTTACTGCAGAAGAATGTTCTTGCCATGTCCTTTGCCCCAAAGGATGAACATGAAGCACAGATACAATTTGCTTTAGAACGGGGAATTCCTGCTACTCTTTCAGTCATTGGAACACAGAGGCTGACATTTCCAGACAATGTTTATGATTTGATCCATTGTGCACGTTGCAGGGTCCATTGGGATGCAGATGGTGGGAAACCATTATTGGAGCTCAATAGGATTCTCAGGCCTGGAGGATATTTCATTTGGTCTGCTACACCGGTTTATCGTGACGATGAACGAGACAAGAGTGTCTGGAATGCAATGGTATTGCTAACGAAGTCGATGTGCTGGAAGGTTGTGAAAAAGACTTCTGATTCATCTGGAGTCGGCCTCGTAATATATCAGAAGCCCACGACAACGTCTTGTTATGAAAAACGTAGTGAAAATGATCCTCCCATATGTGATGAAAAGAACAAGAGAAATAATTCTTGGTATGTGCCTCTGACTAGATGTATTTCCCAGCTTCCAGTTGATAACAAAGGCAACTATTATGCTTGGCCTTCGCCATGGCCGCAGAGACTAACTAGCAAACCTCTTAGCTTGTCTGTTGAATCAAATGCTGAGGAGAAATTCTTGGAGGATACCAAACATTGGTCTACTGTTGTATCAGATGTTTATCGAGTTAATGTCGGCATAGACTGGTCGAGTATCCGAAATGTGCTGGATATGAATGCTGGCTATGGAGGGTTTGCAGCTGCACTATTTGATCTACCACTTTGGGTTATGAATGTTGTCCCCATAGACGTACCGGATACTTTGTCCATCATTTTCGATAGAGGATTGATCGGTCTCTACCACGACTGGTGCGAGTCCTTAAACACCTACCCTCGAACCTACGACCTTCTACATTCGAGCTTTCTCTTCACAGTTCTTAAGAGAAGTTACTTGAGTTCTGCGTTTCTAAGTTTCAACGACTTCGGTTATCCTTTCAGATGCGACGTGGTAGATACTGTCGTGGAGATGGATAGAATAGTGAGGCCAGGCGGATATGTTCTGATTCAGGAAAGCTTGGAGGTAATAAAGGAGCTTGGTCCCATGTTTGGCTCACTTCACTGGTCTGTTTCTGTATATCAAGATGAGTTTCTTGTTGGAAAAAAGGGATTTTGGCGGCCATCAGCCCCTAATTCCAAGTGA 4482 44.49 MAGFLLLFLFLFTNSVAEEVSFGIKQHLSTVTRYGASKGGHDSNYASAPDGCVPIHLNLVARHGTRAPTKKRIRELNSLESQLEMLIREAVENGLSLHKLPSWLKLWKSPWRGKVKGGELIPKGEEELYDLGIRTRKMFPDLFSDDYHPEVYTIKATQVPRASASAVAYGMGLFSGRGSLGSDHHRAFSVISESRASDTMLRFFDCCQRYEDYRKYQEPAVDKLKEPVLDDITKLLRGILIGHNGSSLWTVQPFRACNLCLRAQVALLEWTDDVEVFILKGYGNSLNYKMGVPLLADIVQSMEQAIKAKEEKQIPGSYEKARLRFAHAETVLPFTCLLGLFLEGPDFRKIQTEQPLELPPRPPATRIWKGSAVAPFAGNNMLVLYNCPANSSDQYFVRVLHNEEPIAMPGCDGSDFCSFKDFKEKIVAPHLKHDFNTLCTANLEEPVSEPETISFYLDLEIASVSHVFDSKIRLNIERLAFAWMFCFTTQGTCFTFCTPKLYKIRILQFSEILSTMASHSPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSELSRRRIRSVSSLIRVGRIEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEERYNKSKLVHSIMRHVAETENIDLEDLYIHVGWPLYRKYGHAFEAFKVIVTDPDTVLNSLTREVKEAGPDGQEVTKVVPAMSEDVKDALIKNIRRRMTPQPLKVRADIEMKCFQFDGVLHIKEAMRKAEAAGNDDCPVKIKLVAPPLYVLTTQTLDKEQGITVLEKAITACTEAIEHHKGKLVVKEAPRAVSERDDKLLAEHMAKLRQDNEEISGDEDSEEEEDTGMGEVDVENADDVRALFLLSSLSVSHSLLSDPRFCSSMAVSLQTFIQERKIPFFFTLSVLLFCFLILFFTNSFSLNPLVRTYSALRSPSKTPSSSGVYSDSVLSHDLDSSSLAANFTWKLCNGSVAVDFVPCLDNFKAIKALQSRKHMEHRERHCPSPSPRCLIPLPSGYKVPVPWPKSRDMIWYDNVPHAKLVEYKKDQHWVVKSGDYLNFPGGGTQFKDGVDRYIDFIQKTLSDIKWGKNIRVILDVGCGVASFGGYLLQKNVLAMSFAPKDEHEAQIQFALERGIPATLSVIGTQRLTFPDNVYDLIHCARCRVHWDADGGKPLLELNRILRPGGYFIWSATPVYRDDERDKSVWNAMVLLTKSMCWKVVKKTSDSSGVGLVIYQKPTTTSCYEKRSENDPPICDEKNKRNNSWYVPLTRCISQLPVDNKGNYYAWPSPWPQRLTSKPLSLSVESNAEEKFLEDTKHWSTVVSDVYRVNVGIDWSSIRNVLDMNAGYGGFAAALFDLPLWVMNVVPIDVPDTLSIIFDRGLIGLYHDWCESLNTYPRTYDLLHSSFLFTVLKRSYLSSAFLSFNDFGYPFRCDVVDTVVEMDRIVRPGGYVLIQESLEVIKELGPMFGSLHWSVSVYQDEFLVGKKGFWRPSAPNSK 1493
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 640577 657201 + CmaCh04G001370.1 Cma04g00137 291218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00137 1493 SUPERFAMILY eIF-2-alpha, C-terminal domain 718 834 IPR024055 -
Cma04g00137 1493 SUPERFAMILY Nucleic acid-binding proteins 530 612 IPR012340 -
Cma04g00137 1493 Pfam Eukaryotic translation initiation factor 2 alpha subunit 645 775 IPR011488 GO:0003723|GO:0003743
Cma04g00137 1493 MobiDBLite consensus disorder prediction 827 846 - -
Cma04g00137 1493 CDD HP_HAP_like 118 402 IPR000560 -
Cma04g00137 1493 Gene3D EIF_2_alpha 720 842 IPR024055 -
Cma04g00137 1493 SUPERFAMILY Phosphoglycerate mutase-like 22 446 IPR029033 -
Cma04g00137 1493 CDD S1_IF2_alpha 533 608 IPR044126 GO:0003723
Cma04g00137 1493 Pfam Putative S-adenosyl-L-methionine-dependent methyltransferase 971 1476 IPR004159 GO:0008168
Cma04g00137 1493 Gene3D Vaccinia Virus protein VP39 1040 1219 IPR029063 -
Cma04g00137 1493 Gene3D Translation initiation factor 2; subunit 1; domain 2 610 714 IPR024054 -
Cma04g00137 1493 Pfam Histidine phosphatase superfamily (branch 2) 56 233 IPR000560 -
Cma04g00137 1493 Pfam Histidine phosphatase superfamily (branch 2) 280 402 IPR000560 -
Cma04g00137 1493 Coils Coil 73 93 - -
Cma04g00137 1493 Coils Coil 821 841 - -
Cma04g00137 1493 Gene3D - 521 609 IPR012340 -
Cma04g00137 1493 PANTHER SAM-DEPENDENT METHYLTRANSFERASE 885 1488 IPR004159 GO:0008168
Cma04g00137 1493 PANTHER METHYLTRANSFERASE PMT23-RELATED 885 1488 - -
Cma04g00137 1493 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 1325 1459 IPR029063 -
Cma04g00137 1493 ProSiteProfiles S1 domain profile. 536 607 IPR003029 GO:0003676
Cma04g00137 1493 CDD AdoMet_MTases 1089 1184 - -
Cma04g00137 1493 SUPERFAMILY eIF2alpha middle domain-like 609 714 IPR024054 -
Cma04g00137 1493 SMART S1_6 534 607 IPR022967 -
Cma04g00137 1493 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 995 1204 IPR029063 -
Cma04g00137 1493 MobiDBLite consensus disorder prediction 831 846 - -
Cma04g00137 1493 Pfam S1 RNA binding domain 533 607 IPR003029 GO:0003676
Cma04g00137 1493 Gene3D - 22 432 IPR029033 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01105 Cma04g00137 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00137 Cma-Chr4:640577 Cma07g00451 Cma-Chr7:1966524 0 dispersed
Cma04g00137 Cma-Chr4:640577 Cma04g01105 Cma-Chr4:5682904 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00137 - - bhj:120081432 1077.0