Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g00146 | ATGTGCGCAGTTGCAGTGCCGAAGACGACGACGACGATGACGAATTCATTATTCTCATCTCCAAAAATTGCTTCACTACTCTACAATTCCTCGCTGAATTATTGTTGTTCTTCTCCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGCCGAGATCGGTGTCCAGTCCTAGGAAGCTTCATGTTTCTGCTTCCTCACCGTCGCTGTTGCCATCGACGCCGCAACTTCCGCCTTCTGTTTCGCCGTTGGCTGTTGATACGGTTTTGAAGAGGAAGAGGCCGGCAAGGATCAATGTTCCGCAGTCGATTGATTTTATTGGATTTGGATTTGAGCAACCGGAGGTGATGGAGGAGGAAGAGGAAGAATACTCGGTTTATTGTAAAAGAGGAAGAAGACGCATCGCCGTGGAGGATCGATTCTCAGCCACTGTTGGAATTCAAGGAGATTCTCGACAGGCTTTCTTCGGAGTTTACGACGGGCATGGCGGAGCAAAAGTGGCGGAAATCGCAGCGAAAAGAATGAGTGAGAATGTGATCGATCAGGTGATGAGAAGAACAGATTCGGAACTTGAGGAAGCAATCAAAGACGGCTATCTCACCACCGATCGGGAAGTATCAGAGGAAGGCGTCAGTGGCGGAGCCTGTTGCGTGGCCGCATTGATTCGGAACGGAAATCTCGCAGTCTCAAACGTCGGCGATTGTCGTGCCGTGTTGAGCCGAAGGGGAAAAGCCGAAGCCCTAACCTCCGACCACCGCCCGTGCAGAGAAGACGAGAGAAACCGGATCGAAAATTCGGGCGGTTACATAGACTATTGCCGTGGTGCGTGGAGAGTTCAAGGAACATTAGCTGTATCGCGAGCCATTGGAGACGATCATCTGAAACAGTGGGTGATATCGGAACCAGAGACAAGAATGGTGAAGATTGAGGACGATTGTGATTTCTTGATCCTTGCTTCTGATGGATTTTGGGACAAGGTTAAAAATCAGGAAGCAGTAGACATAGTACAGAGCCTTTGCGGCGTAGAGATGGAGAAGCCAAAGCTATTCGCAGCCTGCAAAGAGCTAGCCGCCTTGTCAACATCACGAGGCTCAGTGGACGACACCACTGTTATGATCATCAAATTGTCCTCATTTCTCTGA | 1137 | 49.25 | MCAVAVPKTTTTMTNSLFSSPKIASLLYNSSLNYCCSSPSSSSSSSSSSPRSVSSPRKLHVSASSPSLLPSTPQLPPSVSPLAVDTVLKRKRPARINVPQSIDFIGFGFEQPEVMEEEEEEYSVYCKRGRRRIAVEDRFSATVGIQGDSRQAFFGVYDGHGGAKVAEIAAKRMSENVIDQVMRRTDSELEEAIKDGYLTTDREVSEEGVSGGACCVAALIRNGNLAVSNVGDCRAVLSRRGKAEALTSDHRPCREDERNRIENSGGYIDYCRGAWRVQGTLAVSRAIGDDHLKQWVISEPETRMVKIEDDCDFLILASDGFWDKVKNQEAVDIVQSLCGVEMEKPKLFAACKELAALSTSRGSVDDTTVMIIKLSSFL | 378 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 698808 | 700602 | - | CmaCh04G001460.1 | Cma04g00146 | 291227 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g00146 | 378 | ProSitePatterns | PPM-type phosphatase domain signature. | 153 | 161 | IPR000222 | GO:0043169 | |
| Cma04g00146 | 378 | SMART | PP2C_SIG_2 | 130 | 374 | IPR001932 | - | |
| Cma04g00146 | 378 | SMART | PP2C_4 | 112 | 372 | IPR001932 | - | |
| Cma04g00146 | 378 | Pfam | Protein phosphatase 2C | 142 | 366 | IPR001932 | - | |
| Cma04g00146 | 378 | MobiDBLite | consensus disorder prediction | 39 | 69 | - | - | |
| Cma04g00146 | 378 | Gene3D | - | 113 | 377 | IPR036457 | - | |
| Cma04g00146 | 378 | SUPERFAMILY | PP2C-like | 121 | 375 | IPR036457 | - | |
| Cma04g00146 | 378 | PANTHER | PROTEIN PHOSPHATASE 2C FAMILY PROTEIN-RELATED | 14 | 377 | - | - | |
| Cma04g00146 | 378 | PANTHER | PROTEIN PHOSPHATASE 2C | 14 | 377 | IPR015655 | GO:0004722|GO:0006470 | |
| Cma04g00146 | 378 | MobiDBLite | consensus disorder prediction | 39 | 76 | - | - | |
| Cma04g00146 | 378 | ProSiteProfiles | PPM-type phosphatase domain profile. | 121 | 374 | IPR001932 | - | |
| Cma04g00146 | 378 | CDD | PP2Cc | 122 | 374 | IPR001932 | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g00146 | Cma04g01108 | ECH | |
| Cma04g01108 | Cma04g00146 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00677 | Cma-Chr1:3539633 | Cma04g00146 | Cma-Chr4:698808 | 4.30E-121 | dispersed | |
| Cma04g00146 | Cma-Chr4:698808 | Cma15g00017 | Cma-Chr15:115908 | 2.45E-86 | dispersed | |
| Cma13g00056 | Cma-Chr13:481976 | Cma04g00146 | Cma-Chr4:698808 | 1.91E-120 | wgd | |
| Cma04g00146 | Cma-Chr4:698808 | Cma04g01108 | Cma-Chr4:5711935 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g00146 | K17506 | - | csv:101208170 | 468.774 |