Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00150 ATGAAAAAAAGAAAAGAAAAGAAAAACGACGCTCCTAATTTTGAAAGAAAAAGACAAAATCCAATCAGTGGAAGGCGGAGTCGGATATATTCTTCCAATTTCAACTTCATTTCCCATTTCATTTGGGTTTCATTTGGATTTCTTGGTGGGACGAAGGAACCACGCTTTGGGTCGAATTTGGATAGCCAAAGTGGGGCCTGCATTTCACTCTGCTTTGACTTTGACTGTTGCGGTGAAGCCGCTACGAAGAAAAGTCCCACCTTCCTACCACTTTCCTTCTTTCTTTACCCTTTTGTGCTCGTAATCGTCTGGATAAAACCCCCGTTTCCTCCATTCTTAGCTCCTCAAACTCCCTCCTCGATTCGAGGCCTTCCCGATTTCCCTCTTTTCCCCTTTTGCGCTCAGAATTGGATGTGTAGTGGCTCAAAGAATAAAGTTGCTTCCTCGAATTCGGCCATGGACGCCAAGTTTCAGAAGCTTAACGATGGTTCTTTCTTCTCTGCGAGTTCAATTTTGCTTGAACTATCGGCTTCTGGTGATGTAGAAGGGTTCAAGAGAGAGGTTGAAGAAAATGGTTTGGATGTTGATGAACCAAGCTGCTGGTATGGCAGAGGAATTGGATCAAAGAAGATGGCTTTTGAAAAAAGAACTCCATTGATGATTGCTGCCATGTTTGGAAGCTCCAAGGTTGTCAAGCACTTAATTGGGACAGGCAAGGTTGATGTCAACAGGGCTTGTGGTTCAGATATGGTCACTGCTCTTCACTGTGCCACTGCTGGTGGCTCTGGTTCTTCCCTTGAGACCATCAAGCTCTTGCTCAATGGATCGGCCAATGTTGATTGTGTCGATGCTAATGGGAGAAAGCCTGTTGATTTGATTGTTTCAGCTTGTAGGATGGTGAGTAATTCAGGAAGAAAGGCTATGGAGATGTTGTTGAGAGGAGATGGTATGGCTGGGGAAGGTGATTTGAGCCTTTACCTTGAAGAAGACCAGCAGAAGATTATAGCTTCCCCGTCTGCAAAAGAAGGAAGTGACAAGAAAGAGTATCCGGTCGATGTATCGCTGCCTGATATCAACAGCGGGATGTACGGTACCGATGATTTCAGGATGTATACCTTCAAAGTGAAACCTTGTTCGAGGGCATATTCGCACGATTGGACCGAGTGTCCTTTTGTTCATCCTGGTGAGAATGCTAGGCGTAGAGACCCCAAGAAGTACCCATATAGCTGCGTTCCGTGCCCTGAATTCCGTAAGGGGGCTTGCCCAAAGGGGGATTCCTGTGAGTATGCACATGGTGTCTTCGAGTCCTGGCTTCACCCTGCTCAATACCGAACCCGACTCTGCAAGGATGAGACTGGCTGCAACAGGAAAGTTTGCTTCTTTGCTCACAAACCCGAAGATTTGCGCCCTGTATATGCTTCAACAGGCTCAGGCATGCCTTCACCCAGATCTCTTTCGAGCAGCGCAGCGGATATGTCTACCATGAGCACATTGACTCTTGGTTCGTCATCGTTGTCATTACCGACAACTTCAACACCTCCCATGTCTCCCTTAGCATCAGTGTCTTCCCCTACGAATGGAAACTTGTGGCAGAACAAGATTAACCTTACCCCTCCTGCTCTGCAACTCTCTGGTAGTCGGTTAAAGACCACCTTGAGTGCAAGAGATTTGGATTTTGAGATGGAATTGCTCGGGTTGGAAAAGAACGCGAGCCAGCTACAACATCAGCAGCAGTTGATCGACGAGATATCTCGACTTTCCACTCCTAATTACTGGAGTGGAGATGTAAGCAGGAGTGCCGAGTTGAAGCCGTCAAACCATGATGACATGTTTGGATCATTAGATTCTTCCTTGTTGTCTCAGTTGCAGGGTGGCTCGCTAAAAACTTCTCAGGTTCAATCTCCGACCGGGATGCAGATGCGCCAAAATATGAACCAACTCCGTGCAAGCTACCCGGCTAACTTAGCATCCTCACCTGTAAAGAAGCCCTCCTCTTTTGGCTTTGATTCATCAAGTGCAGTGGCAGCTGCTGTGATGAACTCAAGGTCTGCTGCCTTTGCAAAACGAAGCCAAAGTTTCATAGATCGAGCTGCAGTGCCTCGTCTTCCCGGGTTTACCACAGCTGCAAACTCTGCAGCTACAATGTCTTCCCATCTCTCAGGTTGGAATTCACCCGATGGCAAACTAGACTGGGGAGTACACAGCAACAATCTCAACAAACTCCAGAAATCTGCTTCGTTTGCGATCCGAAACAATGGCATAGGAGGTCCCACAACCTTTGAACCATCCGCAGGGGAGCCCGATGTCTCTTGGGTTAACTCCTTGGTTAAAGACGTTCCCTCCGACAGCTTCGAGCAGTTCGGTCCGAAGAAGCGGCAATACAACCTCAAAAGAGAAATCAGCGAGATGCTCCCATCCTGGATGGAGCAGCAGTTGTATGCAGAGCAGGAGCAGATATTCAAGAAAAGCCCTGAAGTTTCAGCAGGGTGTCGATCGATCTTCAGAAAGATCAATAACAATCTGATGATCGGATCAAAGAGTGAAGAAGATGATAATGGAGGATGGCAGCCAGGCAGGCACAGCCAGAACCAGAAGAGTGACAGCAAACCAAAACCTTTGCTGCTATTATTGTATAGGGTTGGGACAGATTTGAGGTTGTCGGATTGGGCTGTGGCCTCACTTGGCTTGACCATTGGAAGCTGCATTCGGCCAAAAGTTGCGAATGTGTATAGAAAGCACCAGTTTCATGGTTTGAATAGGGACAGTTCACACATTGGGAGAAAGTGGCCTTGTCAAAAGAAAAAGGTTACCAGTAGCGTTTCTAATCAAGAGAATGTATCTTCAAACCTTGAACGTCATAGAAAGGACAAGGTTCTTGTTAAGATGTGCGGTATTGCATCAGCGAAAGATGCCGCTTTGGCAGCAGAATCTGGTGCTGATTTCATTGGGATGATTATTTGGCCAAACTCAAAGCGTTCTGTTTCATTCTCAGTTGCCAAGGAGATATCCAGAATTGCAAGACAAAATGGTGCACAGCCTGTCGGAGTGTTTGTCGATGACGATGTTGAAAAAATATCTCGAGCTGCTCATACATGTGACCTTGAATTTGTGCAGGAACGTCTTTTTGTTGACCTGATCTCCTTGTGTACAGAAATAGCTAGCTTTCTTACTCTGAATGATTTGGATTCACAGCTTCATGGAGATGAATCACAGGAAGCAATGCCCCTTCTAGTTAAAGATCATAGAATTATTTATGTTCTGAATGCAAATGAAGATGGAAGCCTTCTAAATGAGATCTCTTTTGAGGACTGTTCTTTAGTAGATTGGGTTCTTGTTGACAGTGCCAAAGGTGGCAGTGGGAAGGGATTCAATTGGGCCCAGTTTGAGGTACCAATAATTAGAAGTAAACAAGGTTGGCTCTTGGCTGGAGGGATCAATCCAGCGAATGTGTCTCAAGCCCTATCCCTTCTGAACCCTCGAGGCGTTGATGTTAGCAGTGGAATTTGTGGCTCAGATGGGATTCAGAAGGATCTTACTCGAATCAACTCATTTCTTAAGGCTGTTCATTCAGTGAAATACAAGATTGAGAAGAATACTCACTGCTTCTATAAGGTGATAGTGTGGGATCTGAGGGAAGAGATGGTGAATGACATGGGTTCCAATGTCGTGGTGGATGTTGTTGATCCATCCGTAATCGCGATCGAGGGTGCGTACCTCTCCACGGTACCAAGGAAGTTTATCGTCGTGACCATGGTGATGCAGAATATGGCCAACAACACTGTTCAGCTTTGGATCGTTAGAGAAGCTTCCATGGCCACTGCACATTCACCAACCAAAGCAAACCACATAGAATTCAGGCATAGGAATTCGAAGACAAAAAGCAAGCAAAGATATTCAATAGCTTCAATGTAG 3912 45.99 MKKRKEKKNDAPNFERKRQNPISGRRSRIYSSNFNFISHFIWVSFGFLGGTKEPRFGSNLDSQSGACISLCFDFDCCGEAATKKSPTFLPLSFFLYPFVLVIVWIKPPFPPFLAPQTPSSIRGLPDFPLFPFCAQNWMCSGSKNKVASSNSAMDAKFQKLNDGSFFSASSILLELSASGDVEGFKREVEENGLDVDEPSCWYGRGIGSKKMAFEKRTPLMIAAMFGSSKVVKHLIGTGKVDVNRACGSDMVTALHCATAGGSGSSLETIKLLLNGSANVDCVDANGRKPVDLIVSACRMVSNSGRKAMEMLLRGDGMAGEGDLSLYLEEDQQKIIASPSAKEGSDKKEYPVDVSLPDINSGMYGTDDFRMYTFKVKPCSRAYSHDWTECPFVHPGENARRRDPKKYPYSCVPCPEFRKGACPKGDSCEYAHGVFESWLHPAQYRTRLCKDETGCNRKVCFFAHKPEDLRPVYASTGSGMPSPRSLSSSAADMSTMSTLTLGSSSLSLPTTSTPPMSPLASVSSPTNGNLWQNKINLTPPALQLSGSRLKTTLSARDLDFEMELLGLEKNASQLQHQQQLIDEISRLSTPNYWSGDVSRSAELKPSNHDDMFGSLDSSLLSQLQGGSLKTSQVQSPTGMQMRQNMNQLRASYPANLASSPVKKPSSFGFDSSSAVAAAVMNSRSAAFAKRSQSFIDRAAVPRLPGFTTAANSAATMSSHLSGWNSPDGKLDWGVHSNNLNKLQKSASFAIRNNGIGGPTTFEPSAGEPDVSWVNSLVKDVPSDSFEQFGPKKRQYNLKREISEMLPSWMEQQLYAEQEQIFKKSPEVSAGCRSIFRKINNNLMIGSKSEEDDNGGWQPGRHSQNQKSDSKPKPLLLLLYRVGTDLRLSDWAVASLGLTIGSCIRPKVANVYRKHQFHGLNRDSSHIGRKWPCQKKKVTSSVSNQENVSSNLERHRKDKVLVKMCGIASAKDAALAAESGADFIGMIIWPNSKRSVSFSVAKEISRIARQNGAQPVGVFVDDDVEKISRAAHTCDLEFVQERLFVDLISLCTEIASFLTLNDLDSQLHGDESQEAMPLLVKDHRIIYVLNANEDGSLLNEISFEDCSLVDWVLVDSAKGGSGKGFNWAQFEVPIIRSKQGWLLAGGINPANVSQALSLLNPRGVDVSSGICGSDGIQKDLTRINSFLKAVHSVKYKIEKNTHCFYKVIVWDLREEMVNDMGSNVVVDVVDPSVIAIEGAYLSTVPRKFIVVTMVMQNMANNTVQLWIVREASMATAHSPTKANHIEFRHRNSKTKSKQRYSIASM 1303
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 731055 739941 - CmaCh04G001500.1 Cma04g00150 291231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00150 1303 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 412 432 IPR000571 GO:0046872
Cma04g00150 1303 SUPERFAMILY Ankyrin repeat 171 291 IPR036770 -
Cma04g00150 1303 Pfam N-(5'phosphoribosyl)anthranilate (PRA) isomerase 1064 1186 IPR001240 GO:0004640|GO:0006568
Cma04g00150 1303 Pfam N-(5'phosphoribosyl)anthranilate (PRA) isomerase 960 1038 IPR001240 GO:0004640|GO:0006568
Cma04g00150 1303 CDD PRAI 960 1188 IPR001240 GO:0004640|GO:0006568
Cma04g00150 1303 ProSiteProfiles Ankyrin repeat profile. 249 284 IPR002110 GO:0005515
Cma04g00150 1303 PANTHER UNKEMPT FAMILY MEMBER 159 820 IPR045234 -
Cma04g00150 1303 Hamap N-(5'-phosphoribosyl)anthranilate isomerase [trpF]. 958 1191 IPR001240 GO:0004640|GO:0006568
Cma04g00150 1303 MobiDBLite consensus disorder prediction 844 868 - -
Cma04g00150 1303 ProSiteProfiles Zinc finger C3H1-type profile. 407 434 IPR000571 GO:0046872
Cma04g00150 1303 SMART c3hfinal6 442 465 IPR000571 GO:0046872
Cma04g00150 1303 SMART c3hfinal6 407 433 IPR000571 GO:0046872
Cma04g00150 1303 PANTHER ZINC FINGER CCCH DOMAIN-CONTAINING PROTEIN 29 159 820 - -
Cma04g00150 1303 MobiDBLite consensus disorder prediction 477 523 - -
Cma04g00150 1303 Pfam Ankyrin repeats (3 copies) 219 295 IPR002110 GO:0005515
Cma04g00150 1303 Gene3D - 408 470 - -
Cma04g00150 1303 MobiDBLite consensus disorder prediction 471 523 - -
Cma04g00150 1303 SUPERFAMILY Ribulose-phoshate binding barrel 959 1190 IPR011060 -
Cma04g00150 1303 SMART ANK_2a 249 281 IPR002110 GO:0005515
Cma04g00150 1303 SMART ANK_2a 214 244 IPR002110 GO:0005515
Cma04g00150 1303 Gene3D - 141 325 IPR036770 -
Cma04g00150 1303 Gene3D Aldolase class I 955 1040 IPR013785 -
Cma04g00150 1303 Gene3D Aldolase class I 1049 1193 IPR013785 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00150 Cma04g01112 ECH
Cma04g01112 Cma04g00150 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00150 Cma-Chr4:731055 Cma04g01112 Cma-Chr4:5737546 0 dispersed
Cma16g00221 Cma-Chr16:1001423 Cma04g00150 Cma-Chr4:731055 6.87E-51 transposed
Cma02g00741 Cma-Chr2:4498059 Cma04g00150 Cma-Chr4:731055 0 wgd
Cma20g00342 Cma-Chr20:1682067 Cma04g00150 Cma-Chr4:731055 0 wgd
Cma04g00150 Cma-Chr4:731055 Cma04g01111 Cma-Chr4:5732921 3.46E-127 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34743 PF00697 PRAI 5.00E-22 CL0036 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00150 - - cmax:111490802 1267.68