Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00152 ATGGCTTCAATCTCTTTCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGTACTGGCCTCGTGCGAGCCCTTACTTATGATGTCGATGATTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAGGTTCCATCCGAGCTCCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGATTGGCTTTCCTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTCGGTGCTCGACTCAACTGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCTCAAAGAGGTCACTAGATGGGTCAATTAGAATCAGCAATCCAAAGATAATCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACTCTGTGTGGAAGCTGTGGGGGGAACTACAACGCAGATGAGTTTTGGATTGGATGCGACATCTGTGAAAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCAGCCAAGGCAGACAATATCAAGCAGTATAAATGCCCCTCTTGCAGCACAAAGAAAGGAAGACCATAG 726 47.52 MASISFSPRTVEDIFKDYSARRTGLVRALTYDVDDFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNCNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSSKRSLDGSIRISNPKIIDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 750004 757081 - CmaCh04G001520.1 Cma04g00152 291233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00152 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cma04g00152 241 MobiDBLite consensus disorder prediction 141 161 - -
Cma04g00152 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cma04g00152 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cma04g00152 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Cma04g00152 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Cma04g00152 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Cma04g00152 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cma04g00152 241 Pfam PHD-finger 188 236 IPR019787 -
Cma04g00152 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Cma04g00152 241 SMART PHD_3 187 235 IPR001965 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00152 Cma04g01114 ECH
Cma04g01114 Cma04g00152 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00152 Cma-Chr4:750004 Cma08g00788 Cma-Chr8:4745716 7.81E-96 dispersed
Cma14g00064 Cma-Chr14:282796 Cma04g00152 Cma-Chr4:750004 4.79E-109 wgd
Cma04g00152 Cma-Chr4:750004 Cma04g01114 Cma-Chr4:5756167 4.33E-171 wgd
Cma04g00152 Cma-Chr4:750004 Cma06g00227 Cma-Chr6:1163652 1.27E-115 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34744 PF12165 Alfin 1.10E-66 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00152 - - csv:101211934 464.536