Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00152 ATGGCTTCAATCTCTTTCAGCCCTCGCACCGTCGAAGACATCTTCAAGGATTACAGCGCTCGACGTACTGGCCTCGTGCGAGCCCTTACTTATGATGTCGATGATTTCTACTCGCTTTGCGATCCTGAGAAGGAGAATTTGTGTTTGTACGGACACCCGAATGAGTCTTGGGAGGTGACTTTGCCTGCCGAGGAGGTTCCATCCGAGCTCCCTGAGCCTGCGTTGGGGATCAATTTTGCTAGAGATGGGATGAAGCGCAGAGATTGGCTTTCCTTGGTGGCTGTGCACAGTGATTGTTGGTTGCTTTCTGTGGCGTTTTACCTCGGTGCTCGACTCAACTGCAATGAGCGGAAGCGACTATTTAGTATGATTAATGATCTACCCACTCTATTTGAAGTTGCGTCTGGAAGGAAAGCTGTTAAAGACAAACCCAGTATGGATAGTGGAAGTAAATCCAGAAACAGCTCAAAGAGGTCACTAGATGGGTCAATTAGAATCAGCAATCCAAAGATAATCGATGAGAGTTATGGAGAGGATGAGGATGAGCATGGTGATACTCTGTGTGGAAGCTGTGGGGGGAACTACAACGCAGATGAGTTTTGGATTGGATGCGACATCTGTGAAAGGTGGTTCCATGGAAAATGTGTGCGGATAACACCAGCCAAGGCAGACAATATCAAGCAGTATAAATGCCCCTCTTGCAGCACAAAGAAAGGAAGACCATAG 726 47.52 MASISFSPRTVEDIFKDYSARRTGLVRALTYDVDDFYSLCDPEKENLCLYGHPNESWEVTLPAEEVPSELPEPALGINFARDGMKRRDWLSLVAVHSDCWLLSVAFYLGARLNCNERKRLFSMINDLPTLFEVASGRKAVKDKPSMDSGSKSRNSSKRSLDGSIRISNPKIIDESYGEDEDEHGDTLCGSCGGNYNADEFWIGCDICERWFHGKCVRITPAKADNIKQYKCPSCSTKKGRP 241
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 750004 757081 - CmaCh04G001520.1 Cma04g00152 291233

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00152 241 ProSitePatterns Zinc finger PHD-type signature. 188 234 IPR019786 -
Cma04g00152 241 MobiDBLite consensus disorder prediction 141 161 - -
Cma04g00152 241 ProSiteProfiles Zinc finger PHD-type profile. 185 237 IPR019787 -
Cma04g00152 241 Pfam Alfin 10 135 IPR021998 GO:0006355|GO:0042393
Cma04g00152 241 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 177 236 IPR013083 -
Cma04g00152 241 PANTHER CPG BINDING PROTEIN 1 240 IPR045104 GO:0006355|GO:0042393
Cma04g00152 241 SUPERFAMILY FYVE/PHD zinc finger 176 239 IPR011011 -
Cma04g00152 241 CDD PHD_AL_plant 187 237 IPR044104 -
Cma04g00152 241 Pfam PHD-finger 188 236 IPR019787 -
Cma04g00152 241 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 2 1 240 - -
Cma04g00152 241 SMART PHD_3 187 235 IPR001965 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00152 - - - csv:101211934 464.536
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cma04g00152 Cma04g01114 ECH
Cma04g01114 Cma04g00152 CST
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00152 Cma-Chr4:750004 Cma08g00788 Cma-Chr8:4745716 7.81E-96 dispersed
Cma14g00064 Cma-Chr14:282796 Cma04g00152 Cma-Chr4:750004 4.79E-109 wgd
Cma04g00152 Cma-Chr4:750004 Cma04g01114 Cma-Chr4:5756167 4.33E-171 wgd
Cma04g00152 Cma-Chr4:750004 Cma06g00227 Cma-Chr6:1163652 1.27E-115 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi13g55 . Blo13g00799 . . . Bpe15g01161 . . Cmo04g00150 Cmo04g01181 Cma04g01114 Cma04g00152 Car04g00146 . . . Cpe01g00130 . . . . . . . Cla07g00398 Cam07g0425 Cec07g0477 Cco07g0433 Clacu07g0425 Cmu07g0469 Cre07g0775 . . . . . . Chy10g00423 Cme10g01083 . Blo04g00232 Bda14g00249 . . . . . . . . . . . . Cpe01g01035 . . . . . . . . . . . . . . . . Csa05g00818 . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma16g00752 . 1 252 Alfin-like Transcription Factor Family AT1G14510 83.3 1.3e-112 403.3
Cma04g00878 . 1 279 Alfin-like Transcription Factor Family AT1G14510 75.3 1.5e-108 389.8
Cma12g01318 . 9 249 Alfin-like Transcription Factor Family AT1G14510 69.4 4.2e-95 345.1
Cma08g00788 CST 677 912 Alfin-like Transcription Factor Family AT1G14510 68.8 5.1e-93 338.2
Cma05g00416 CCT,ECH 9 250 Alfin-like Transcription Factor Family AT1G14510 69.0 6.7e-93 337.8
Cma05g01413 . 448 687 Alfin-like Transcription Factor Family AT1G14510 69.3 1.5e-92 336.7
Cma17g00700 CST 711 949 Alfin-like Transcription Factor Family AT1G14510 67.2 2.0e-89 326.2
Cma12g00657 CCT,ECH 440 660 Alfin-like Transcription Factor Family AT1G14510 67.4 6.9e-82 301.2
Cma04g00152 CST,ECH 8 238 Alfin-like Transcription Factor Family AT1G14510 59.8 5.2e-77 285.0
Cma04g01114 CST,ECH 9 238 Alfin-like Transcription Factor Family AT1G14510 59.2 1.1e-76 283.9
Cma06g00227 CST 8 236 Alfin-like Transcription Factor Family AT1G14510 58.2 2.6e-73 272.7
Cma14g00064 CST 340 540 Alfin-like Transcription Factor Family AT1G14510 58.8 5.5e-63 238.4
Cma12g01318 . 1 251 Alfin-like Transcription Factor Family AT5G26210 75.6 3.6e-110 395.2
Cma05g00416 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT5G26210 78.3 2.6e-108 389.0
Cma05g01413 . 440 689 Alfin-like Transcription Factor Family AT5G26210 73.6 2.2e-107 386.0
Cma08g00788 CST 668 917 Alfin-like Transcription Factor Family AT5G26210 65.4 2.7e-97 352.4
Cma17g00700 CST 702 951 Alfin-like Transcription Factor Family AT5G26210 64.6 6.6e-96 347.8
Cma16g00752 . 9 254 Alfin-like Transcription Factor Family AT5G26210 72.4 1.4e-93 340.1
Cma12g00657 CCT,ECH 440 662 Alfin-like Transcription Factor Family AT5G26210 76.0 3.4e-92 335.5
Cma04g00878 . 9 281 Alfin-like Transcription Factor Family AT5G26210 66.4 1.0e-88 323.9
Cma04g00152 CST,ECH 5 240 Alfin-like Transcription Factor Family AT5G26210 57.4 5.0e-80 295.0
Cma04g01114 CST,ECH 9 240 Alfin-like Transcription Factor Family AT5G26210 58.4 7.3e-79 291.2
Cma06g00227 CST 8 238 Alfin-like Transcription Factor Family AT5G26210 55.7 4.6e-73 271.9
Cma14g00064 CST 340 539 Alfin-like Transcription Factor Family AT5G26210 56.5 1.9e-63 240.0
Cma12g01318 . 1 251 Alfin-like Transcription Factor Family AT3G42790 71.8 6.6e-101 364.4
Cma05g01413 . 440 689 Alfin-like Transcription Factor Family AT3G42790 69.3 2.8e-99 359.0
Cma05g00416 CCT,ECH 1 252 Alfin-like Transcription Factor Family AT3G42790 72.8 2.8e-99 359.0
Cma08g00788 CST 668 917 Alfin-like Transcription Factor Family AT3G42790 64.1 1.4e-95 346.7
Cma17g00700 CST 702 951 Alfin-like Transcription Factor Family AT3G42790 62.5 2.3e-93 339.3
Cma16g00752 . 3 254 Alfin-like Transcription Factor Family AT3G42790 70.2 6.9e-90 327.8
Cma12g00657 CCT,ECH 440 662 Alfin-like Transcription Factor Family AT3G42790 70.9 5.1e-85 311.6
Cma04g00878 . 9 281 Alfin-like Transcription Factor Family AT3G42790 63.7 8.7e-85 310.8
Cma04g00152 CST,ECH 6 240 Alfin-like Transcription Factor Family AT3G42790 59.2 1.7e-80 296.6
Cma04g01114 CST,ECH 9 240 Alfin-like Transcription Factor Family AT3G42790 59.9 1.4e-79 293.5
Cma06g00227 CST 8 238 Alfin-like Transcription Factor Family AT3G42790 56.7 1.8e-74 276.6
Cma14g00064 CST 340 540 Alfin-like Transcription Factor Family AT3G42790 56.0 3.6e-62 235.7
Cma04g01114 CST,ECH 1 241 Alfin-like Transcription Factor Family AT5G05610 77.3 3.1e-111 398.7
Cma04g00152 CST,ECH 1 240 Alfin-like Transcription Factor Family AT5G05610 76.8 7.5e-110 394.0
Cma06g00227 CST 1 239 Alfin-like Transcription Factor Family AT5G05610 71.8 4.1e-100 361.7
Cma08g00788 CST 677 917 Alfin-like Transcription Factor Family AT5G05610 65.7 2.1e-91 332.8
Cma12g01318 . 8 251 Alfin-like Transcription Factor Family AT5G05610 64.5 3.0e-90 328.9
Cma05g01413 . 447 689 Alfin-like Transcription Factor Family AT5G05610 65.2 6.6e-90 327.8
Cma14g00064 CST 333 572 Alfin-like Transcription Factor Family AT5G05610 67.2 8.7e-90 327.4
Cma05g00416 CCT,ECH 8 252 Alfin-like Transcription Factor Family AT5G05610 64.5 2.1e-88 322.8
Cma17g00700 CST 711 951 Alfin-like Transcription Factor Family AT5G05610 63.6 6.2e-88 321.2
Cma16g00752 . 9 254 Alfin-like Transcription Factor Family AT5G05610 63.6 1.4e-84 310.1
Cma04g00878 . 9 281 Alfin-like Transcription Factor Family AT5G05610 55.7 3.1e-79 292.4
Cma12g00657 CCT,ECH 440 662 Alfin-like Transcription Factor Family AT5G05610 64.6 2.0e-78 289.7
Cma04g01114 CST,ECH 43 241 Alfin-like Transcription Factor Family AT3G11200 79.7 3.9e-95 345.1
Cma04g00152 CST,ECH 43 240 Alfin-like Transcription Factor Family AT3G11200 78.6 1.1e-92 337.0
Cma06g00227 CST 43 239 Alfin-like Transcription Factor Family AT3G11200 72.8 2.1e-80 296.2
Cma08g00788 CST 711 917 Alfin-like Transcription Factor Family AT3G11200 65.4 6.4e-74 274.6
Cma12g01318 . 44 251 Alfin-like Transcription Factor Family AT3G11200 63.4 8.4e-74 274.2
Cma05g01413 . 483 689 Alfin-like Transcription Factor Family AT3G11200 63.8 8.4e-74 274.2
Cma12g00657 CCT,ECH 454 662 Alfin-like Transcription Factor Family AT3G11200 63.6 1.6e-72 270.0
Cma17g00700 CST 745 951 Alfin-like Transcription Factor Family AT3G11200 63.8 6.0e-72 268.1
Cma05g00416 CCT,ECH 44 252 Alfin-like Transcription Factor Family AT3G11200 62.7 1.0e-71 267.3
Cma16g00752 . 44 254 Alfin-like Transcription Factor Family AT3G11200 64.6 3.3e-70 262.3
Cma04g00878 . 68 281 Alfin-like Transcription Factor Family AT3G11200 62.6 4.3e-70 261.9
Cma14g00064 CST 375 540 Alfin-like Transcription Factor Family AT3G11200 75.9 7.4e-70 261.2
Cma16g00752 . 1 161 Alfin-like Transcription Factor Family AT2G02470 85.1 7.5e-76 281.2
Cma04g00878 . 1 191 Alfin-like Transcription Factor Family AT2G02470 72.3 1.6e-73 273.5
Cma12g01318 . 9 158 Alfin-like Transcription Factor Family AT2G02470 78.7 2.7e-65 246.1
Cma05g01413 . 440 597 Alfin-like Transcription Factor Family AT2G02470 75.9 3.5e-65 245.7
Cma05g00416 CCT,ECH 1 155 Alfin-like Transcription Factor Family AT2G02470 78.7 2.3e-64 243.0
Cma17g00700 CST 711 861 Alfin-like Transcription Factor Family AT2G02470 76.8 1.6e-62 236.9
Cma08g00788 CST 677 825 Alfin-like Transcription Factor Family AT2G02470 76.5 3.6e-62 235.7
Cma14g00064 CST 340 499 Alfin-like Transcription Factor Family AT2G02470 64.2 1.1e-53 207.6
Cma06g00227 CST 8 174 Alfin-like Transcription Factor Family AT2G02470 62.1 1.8e-53 206.8
Cma12g00657 CCT,ECH 440 568 Alfin-like Transcription Factor Family AT2G02470 78.3 9.0e-53 204.5
Cma04g01114 CST,ECH 9 155 Alfin-like Transcription Factor Family AT2G02470 68.0 9.0e-53 204.5
Cma04g00152 CST,ECH 8 155 Alfin-like Transcription Factor Family AT2G02470 68.2 9.0e-53 204.5
Cma12g01318 . 1 164 Alfin-like Transcription Factor Family AT5G20510 76.4 1.4e-71 266.5
Cma05g00416 CCT,ECH 1 157 Alfin-like Transcription Factor Family AT5G20510 78.5 7.1e-71 264.2
Cma08g00788 CST 668 829 Alfin-like Transcription Factor Family AT5G20510 76.4 3.9e-69 258.5
Cma17g00700 CST 702 863 Alfin-like Transcription Factor Family AT5G20510 75.2 3.3e-68 255.4
Cma05g01413 . 440 603 Alfin-like Transcription Factor Family AT5G20510 72.1 4.8e-67 251.5
Cma16g00752 . 9 172 Alfin-like Transcription Factor Family AT5G20510 71.1 3.8e-64 241.9
Cma04g00878 . 3 199 Alfin-like Transcription Factor Family AT5G20510 59.8 5.6e-60 228.0
Cma12g00657 CCT,ECH 440 569 Alfin-like Transcription Factor Family AT5G20510 76.2 1.3e-56 216.9
Cma04g00152 CST,ECH 6 157 Alfin-like Transcription Factor Family AT5G20510 63.3 3.9e-53 205.3
Cma14g00064 CST 339 489 Alfin-like Transcription Factor Family AT5G20510 62.4 9.6e-52 200.7
Cma04g01114 CST,ECH 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.8e-51 198.4
Cma06g00227 CST 7 157 Alfin-like Transcription Factor Family AT5G20510 62.4 4.8e-51 198.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001062 3 2 2 5 5 2 4 2 3 2 2 2 3 2 2 4 2 2 4 3 2 2 2 3 3 3 2 3 3 2 81
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34744 PF12165 Alfin 1.10E-66 No_clan Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00152 Cma_Chr04 FPKM 27.391132 31.362516 36.479446 33.78857 35.632885 31.767076 36.581024 46.895878 51.531998 49.808708