Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00154 ATGACGAGATTACCTCTTCTCACCGCTGCTATCCCCGTCCTCTCTTTCATCGCTGTCGTTTTCCCTCTTCTTCCGGCGACCTTAGCTCTCGGCTCTGCCTCCACGCTTGCTGTCAGCTACGGTTCCGCCACCGTCTGCGGCATCGTCGCCGAGCAGCCCACGCAAAGGATTCTCTGCTTCCGTCGCGGTCAAACCATTTTTATTGACCCAAATATCTCCTTCTCCGTCATCTCCGGCGGTCGGGATACCTTCTGCGGCATAAGAGCCGGCGGCTATACTCTTCTCTGCTGGGACTTTGATCAAAATACTGCTGCGTTTTCCCGGAGAAGGCTTTACTTCAACTCCACTGTCCTTCTCGAGAATCTCGCCGTCGGCGCCGACCAAATCTGTGCCACCGTGGTCGGCGCCGGCAATGCAACTTGCTGGCGCGATGGTAACAACTCCATTGGATTTTCTTCTCTTCAATTCGATTCAATTTCTTCTGGGTTTGGATTTTCTTGCGGAATTTTGAAGGGTAATCAATCCGTTCGATGTTGGGGTCGGAATTCGTCGATTGCGGCCCTAATCGAAAATGGGTTTCGAAATATCTCAATGTCGACCATCGTCGCCGGTGGGTTTCATGCTTGTGGATTGAATATCTCCGGTGGGTTGGTTTGTAGGGGGAACAACGATTTTGGGCAGTTGGATTTTCCTTCGAATTCATCCAGAGGGTTCTCTGAATTGGCCCTCGGCGAACGCCATAGCTGTGGGATTTTGCTCTCGAATCGATCGGTGGTTTGTTGGGGAAGCTCAGATTTCTCTGTGGATTCAATTCGAGAAACTTCTTTTGAGTTAATTTCTTCGGGATCGGATTTCGTTTGTGGATTAACGACGAGTAATTTCTCTGTTCTTTGTTGGGGGCCTGGCTGGTCGAACGATTCTTCTGGTCTTTTTTCACTTCCTCTTCCTAAGATTCTTCCTGGTCCTTGTGTTCAATCTTCTTGTCGGGATTGTGGTGTCTATCCTCTCTCTCAAACGCTCTGTTCTGATTCTGGGAATGTCTGTAATCGTTGTTTGGTTACTGTTTCACCACCGTTTTTGCCAATACCGCCTCCTCCGCCCTCGCCGCCGCCAATGGTGGTGACCCCATCACCTCCTCCAGCGGCATTGAGAAAGGGTTTGCTGGCTTTTGCTATTGTGGGCTCAGTTGGGGCCGTTGCTGGGATTTGTACTGTTGTTTACTGTTTATGGACTGGTGTTTGTTTTGGTCATAAGAAGATACACAACTCTGTTCAGCCGACCATTACTCGAGCTGCTAGCTCAAATGGTGGGACAACAACGTCAAACACGAACAACAGCCCGCCATCACGGTCTTCGACGATTCGGCGACAAGGGTCTCGAATAATGCGGAGGCAGAGGAGTGGTACGTCCTCGAAGCACGCCGATAGAGCAGAAGAATTCTCTCTGGCTGAGCTTGCTTTGGCTACCAATGACTTCTCCCATGAAAACAAGATTGGTGAAGGGAGCTTTGGCATTGTGTACCGTGGGAAACTCAGCGATGGGCGGGAGGTTGCGATCAAGAGAGGCGAAACGGGGCCAAAGACGAAGAAGTTTCAGGAGAAGGAGAGTGCTTTTGATTCAGAATTGGCGTTCTTGTCTAGACTTAATCACAAGCATTTGGTGAGGCTTGTGGGGTATTGTGAGGAGAAAGATGAGCGGCTTTTGGTTTATGAGTATATGAAAAATGGTGCACTTTACAATCATCTGCATGACAAGACCAACTCTGAAAAGGGTAGCAGTGTTGTGAACTCTTGGAAAATGAGGATCAAAATTGCTTTAGATGCAGCAAGAGGAATTGAATATCTTCATAACTATGCAGTCCCTCCTATAATCCATAGGGATATCAAATCATCCAACATTCTTCTCGATTCGAATTGGACAGCGAGAGTATCCGATTTCGGGTTGTCGTTGATGAGTCCCGGGTCAGACCTTGATTACCGGCCGATGAAGGCAGCTGGGACGGTTGGTTACATTGATCCTGAGTACTATGGACTGAACGTTTTGACTGCTAAGAGTGATGTGTATGGGCTTGGGGTGGTGTTGCTGGAGCTTTTGACAGGGAAGAGAGCTATATTTAAGGATGATGAGCAAGGAGGGACACTGGTGAGCGTGGTCGATTTTGCAGTGCCTGCGATTACGATCGGAGAACTGGGGAAGATTTTGGATCCAAGAGTTGGGCCACCGCAGATGAACGAAGCAGAGGCAGTAGAGCTTGTGGCTTACACAGCGATGCACTGCGTGCGGTTGGAAGGGAAAGATCGGCCAACGATGATTGACATTGTTGTGAATTTGGAACGAGCTTTGAATCTTTGTGATGATAGTCATGGCAACAGCTCTAGTGGTGGAATTTCCATTGTTTCAGAGTGA 2406 48.92 MTRLPLLTAAIPVLSFIAVVFPLLPATLALGSASTLAVSYGSATVCGIVAEQPTQRILCFRRGQTIFIDPNISFSVISGGRDTFCGIRAGGYTLLCWDFDQNTAAFSRRRLYFNSTVLLENLAVGADQICATVVGAGNATCWRDGNNSIGFSSLQFDSISSGFGFSCGILKGNQSVRCWGRNSSIAALIENGFRNISMSTIVAGGFHACGLNISGGLVCRGNNDFGQLDFPSNSSRGFSELALGERHSCGILLSNRSVVCWGSSDFSVDSIRETSFELISSGSDFVCGLTTSNFSVLCWGPGWSNDSSGLFSLPLPKILPGPCVQSSCRDCGVYPLSQTLCSDSGNVCNRCLVTVSPPFLPIPPPPPSPPPMVVTPSPPPAALRKGLLAFAIVGSVGAVAGICTVVYCLWTGVCFGHKKIHNSVQPTITRAASSNGGTTTSNTNNSPPSRSSTIRRQGSRIMRRQRSGTSSKHADRAEEFSLAELALATNDFSHENKIGEGSFGIVYRGKLSDGREVAIKRGETGPKTKKFQEKESAFDSELAFLSRLNHKHLVRLVGYCEEKDERLLVYEYMKNGALYNHLHDKTNSEKGSSVVNSWKMRIKIALDAARGIEYLHNYAVPPIIHRDIKSSNILLDSNWTARVSDFGLSLMSPGSDLDYRPMKAAGTVGYIDPEYYGLNVLTAKSDVYGLGVVLLELLTGKRAIFKDDEQGGTLVSVVDFAVPAITIGELGKILDPRVGPPQMNEAEAVELVAYTAMHCVRLEGKDRPTMIDIVVNLERALNLCDDSHGNSSSGGISIVSE 801
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 764144 766549 + CmaCh04G001540.1 Cma04g00154 291235
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00154 801 MobiDBLite consensus disorder prediction 431 456 - -
Cma04g00154 801 ProSitePatterns Protein kinases ATP-binding region signature. 498 520 IPR017441 GO:0005524
Cma04g00154 801 Pfam Protein kinase domain 493 712 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00154 801 PANTHER SERINE/THREONINE-KINASE CCR4-LIKE PROTEIN 8 797 - -
Cma04g00154 801 MobiDBLite consensus disorder prediction 431 475 - -
Cma04g00154 801 Gene3D - 149 339 IPR009091 -
Cma04g00154 801 SMART serkin_6 492 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00154 801 ProSitePatterns Serine/Threonine protein kinases active-site signature. 623 635 IPR008271 GO:0004672|GO:0006468
Cma04g00154 801 PANTHER SERINE/THREONINE-PROTEIN KINASE-LIKE PROTEIN CCR4 8 797 IPR044815 GO:0004674
Cma04g00154 801 Gene3D Transferase(Phosphotransferase) domain 1 573 792 - -
Cma04g00154 801 ProSiteProfiles Protein kinase domain profile. 492 781 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00154 801 SUPERFAMILY Protein kinase-like (PK-like) 473 777 IPR011009 -
Cma04g00154 801 Gene3D Phosphorylase Kinase; domain 1 453 572 - -
Cma04g00154 801 Pfam Regulator of chromosome condensation (RCC1) repeat 158 183 - -
Cma04g00154 801 SUPERFAMILY RCC1/BLIP-II 125 333 IPR009091 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g00666 Cma-Chr1:3480087 Cma04g00154 Cma-Chr4:764144 0 dispersed
Cma04g00154 Cma-Chr4:764144 Cma14g01475 Cma-Chr14:11222094 3.14E-15 dispersed
Cma09g01281 Cma-Chr9:8809902 Cma04g00154 Cma-Chr4:764144 3.73E-136 transposed
Cma13g00062 Cma-Chr13:520644 Cma04g00154 Cma-Chr4:764144 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68457 PF00069 Pkinase 3.70E-44 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00154 - - bhj:120081574 1301.96