Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00161 ATGGTTTCCATATATCGTGATCGGACGTCGGAGTTTCGGTCGCTGTCGGATACGCTGAGGAAGATTGCCGGAGTCACAGCCGACGTCCATCCAGTTCAAAATGAACCATCGGCGTCCGTACTCTCCGGATCACCGGGCTTTGCACGATCTGAATTCAGCAGGAAGGCATCTCTTATCGGCTGGGGAATCCAAGAAGCCTCTCAGAAGATCGCGAGGCTTGCTCAGTTAGCAAAAAGATCATCGATGTTTGATGATCCAATCAGGGAAATACAGGACATGACTGCCTTGATTAAGAATGATATTACATCATTGAATGTAGCTATCTCAGATTTGCAAGCCATCCAAACGATGGAGATAGCAGAGGGGAATTATTCTGAGGACAGAATTGTTCATTCAACCGCTGTCTGCGATGACCTCAAGAGTAAACTCATGGGAGCTACAAAACAACTTCAAGATGTGTTAACTGCAAGAACAGAGAATATCAAGGCCAATGAGAGCCGGAGACAAATATTCTCTGCAAATGCAACCAGAGAAAGTCCTTTTCAAAATCAAGCTAAAACTGTAACTCAACCTCCACCTTGGTTAAGTAATACATCTGAAAGTGCTCAATCATCCTTGTTGTCATCAAATGGAGGTCAAGCTGGGGGTCAATTGAGACGAAGGCTAGCTGTGGAGGTCACCCCATCACAGCAAATGGAGATGTCAATGTTACAGCAGGTGGTTCCTAGGCAGGAAAACTATTTACAAAGTCGGGCAGGTGCTCTCCACAATGTGGAATCCACCATCTCAGAACTGGGTGGAATTTTTACGCATCTTGCCACAATGGTAGCACATCAAGGAGAACTTGCTATCAGGATTGATGACAACATGGATGAATCAATGGCGAATGTAGAAGGTGCTCGAACCTCTCTCTTTAGGCATCTTAACCAGATATCATCAAACAGATGGCTTCTTATCAAAATATTTGTTATTCTAATAATTTTCTTGATGCTCTTTATTTTCTTGGCATAA 1011 43.82 MVSIYRDRTSEFRSLSDTLRKIAGVTADVHPVQNEPSASVLSGSPGFARSEFSRKASLIGWGIQEASQKIARLAQLAKRSSMFDDPIREIQDMTALIKNDITSLNVAISDLQAIQTMEIAEGNYSEDRIVHSTAVCDDLKSKLMGATKQLQDVLTARTENIKANESRRQIFSANATRESPFQNQAKTVTQPPPWLSNTSESAQSSLLSSNGGQAGGQLRRRLAVEVTPSQQMEMSMLQQVVPRQENYLQSRAGALHNVESTISELGGIFTHLATMVAHQGELAIRIDDNMDESMANVEGARTSLFRHLNQISSNRWLLIKIFVILIIFLMLFIFLA 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 797518 799873 - CmaCh04G001610.1 Cma04g00161 291242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00161 336 CDD SNARE_syntaxin5 248 333 - -
Cma04g00161 336 ProSitePatterns Syntaxin / epimorphin family signature. 251 290 IPR006012 GO:0005484|GO:0006886|GO:0016020
Cma04g00161 336 Gene3D - 48 300 - -
Cma04g00161 336 MobiDBLite consensus disorder prediction 173 217 - -
Cma04g00161 336 PANTHER SYNTAXIN 4 335 IPR045242 -
Cma04g00161 336 SMART tSNARE_6 240 307 IPR000727 -
Cma04g00161 336 Pfam Syntaxin-5 N-terminal, Sly1p-binding domain 6 21 IPR021538 -
Cma04g00161 336 PANTHER SYNTAXIN-31 4 335 - -
Cma04g00161 336 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 245 307 IPR000727 -
Cma04g00161 336 MobiDBLite consensus disorder prediction 173 215 - -
Cma04g00161 336 Pfam SNARE domain 282 333 IPR000727 -
Cma04g00161 336 SUPERFAMILY t-snare proteins 48 300 IPR010989 GO:0016020|GO:0016192
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01124 Cma04g00161 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00161 Cma-Chr4:797518 Cma05g00643 Cma-Chr5:3249770 5.07E-84 dispersed
Cma04g00161 Cma-Chr4:797518 Cma04g01124 Cma-Chr4:5812955 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00161 K08490 - csv:101213786 484.567