Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00163 ATGGAGGGAAAGGAAGAAGACGTACGATTGGGAGCCAACAAGTTCAACGAGAGGCAGCCCATTGGAACGGCGGCACAGAGCCAAGACGATGGCAAAGACTACAAGGAGCCACCGCCGGCGCCGTTATTCGAGCCGGGGGAGCTGACCTCATGGTCCTTTTACAGAGCGGGAATCGCGGAGTTCTTCGCGACTTTCCTCTTCCTTTACATCACCGTTTTGACGGTCATGGGCGTGGTTCGTTCCAATGAAGCCAACGGCAACACGTGCAAGACCGTTGGAATTCAGGGCATCGCTTGGGCTTTTGGTGGTATGATTTTTGCGTTGGTTTACTGCACCGCTGGGATCTCCGGTGGGCACATCAACCCGGCGGTGACTTTTGGGTTGCTTCTGGCGAGAAAGCTGTCGTTGACCAGGGCCGTTTTCTACATGGTGATGCAGTGCCTTGGCGCCATCTGCGGCGCTGGTGTTGTGAAGGGGTTCCAACCCAAGCCCTATGACAGGCTCGGCGGTGGAGCTAACGTGGTCAGCAAAGGATACACCAAAGGAGACGGCCTCGGCGCTGAGATCGTCGGTACCTTTATCCTTGTTTACACTGTATTCTCCGCCACTGACGCCAAACGTAGCGCCAGAGACTCGCATGTTCCGATTTTGGCACCGCTACCAATTGGGTTCGCAGTGTTCTTAGTTCACTTGGCTACCATTCCGATCACCGGCACCGGCATCAACCCTGCTCGGAGTTTGGGCGCTGCCATCATCTACAACAACGAGAAAGCCTGGGATGACCACTGGATTTTCTGGGTTGGACCGTTCATTGGAGCAGGATTGGCAGCTTTGTACCACCAGGTGGTGATCAGAGCCATACCCTTCAAGTCCAAGTGA 879 55.18 MEGKEEDVRLGANKFNERQPIGTAAQSQDDGKDYKEPPPAPLFEPGELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLLLARKLSLTRAVFYMVMQCLGAICGAGVVKGFQPKPYDRLGGGANVVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIYNNEKAWDDHWIFWVGPFIGAGLAALYHQVVIRAIPFKSK 292
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 804572 805904 + CmaCh04G001630.1 Cma04g00163 291244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00163 292 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PRINTS Major intrinsic protein family signature 263 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PANTHER AQUAPORIN PIP1-4-RELATED 1 292 - -
Cma04g00163 292 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cma04g00163 292 TIGRFAM MIP: MIP family channel proteins 59 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 292 IPR034294 -
Cma04g00163 292 SUPERFAMILY Aquaporin-like 47 285 IPR023271 -
Cma04g00163 292 MobiDBLite consensus disorder prediction 1 39 - -
Cma04g00163 292 Pfam Major intrinsic protein 47 280 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 CDD MIP 55 283 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00163 292 Gene3D Glycerol uptake facilitator protein. 40 291 IPR023271 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01127 Cma04g00163 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00163 Cma-Chr4:804572 Cma04g01128 Cma-Chr4:5825359 0 dispersed
Cma18g00110 Cma-Chr18:540120 Cma04g00163 Cma-Chr4:804572 3.36E-35 dispersed
Cma04g00163 Cma-Chr4:804572 Cma04g00164 Cma-Chr4:807059 0 tandem
Cma20g00773 Cma-Chr20:3659244 Cma04g00163 Cma-Chr4:804572 2.67E-21 transposed
Cma04g00163 Cma-Chr4:804572 Cma04g01127 Cma-Chr4:5823126 0 wgd
Cma04g00163 Cma-Chr4:804572 Cma06g00236 Cma-Chr6:1199027 7.82E-172 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00163 K09872 - csv:101215145 567.77