Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00164 | ATGGAAGGGAAGGAAGAAGATGTGAGGCTCGGAGCCAACAAGTTCAACGAGAGGCAGCCGATTGGGACGGCGGCGCAGAGTCAGGACGATGCTAAGGACTACAAGGAGCCTCCGCCGGCTCCACTGTTCGAGCCAGAGGAGCTGACTTCATGGTCCTTTTACAGAGCCGGTATCGCGGAGTTCTTTGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACTGTCATGGGCGTCGTCCGGTCCAATGAAGCCAACGGCAACACGTGCAAGACCGTTGGAATTCAGGGCATCGCTTGGGCTTTTGGTGGTATGATTTTTGCGCTGGTTTATTGCACGGCTGGAATCTCCGGTGGACACATCAACCCAGCGGTGACTTTTGGGCTTTTTCTGGCGAGGAAGCTGTCGTTGACCCGGGCGATTTTCTACATGGTGATGCAGTGCCTAGGAGCCATCTGCGGCGCCGGGGTTGTGAAGGGCTTCCAACCCAAGCCCTACAACAGGCTCGGCGGTGGTGCTAACATGGTCAGCAAAGGGTACACCAAGGGCGATGGCCTCGGTGCCGAGATTGTCGGCACCTTTATCCTTGTTTACACCGTCTTCTCTGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTTCCCATCCTGGCCCCGTTGCCAATTGGGTTCGCGGTGTTCTTAGTTCACTTGGCCACCATCCCAATCACCGGCACCGGCATCAACCCAGCCCGGAGCTTGGGTGCTGCCATCATCTTCAACAATGACAAAGCCTGGGATGATCACGTGCTGGATTTTCTGGGTGGGACCATTCATTGGCGCTGCTCTGGCAGCTCTGTACCACCAAGTTGTGATCAGAGCCATTCCGTTCAAGTCGAAGTGATACGTGATCGAATCATAGCCCTTCATTTCGTTTGTGTGTTTTGGTGTTTGTATGTTTATGGAGATTCGAAGCGTGGGGCCCTCAATTTTATGTCGGATGCGTTGATCAATGGATTGGCAGGAGCTGGAGGAGGGGTCATTGCTCAACTCATCACATACCCTCTTCAAACTGTGAATACTCGGCAGCAAACAGAACGCGATGTGAAGAACGAGAAGAGGAAACTTGGAACATTGCAGCTCATGTGTCAGGTTGTAAAACATGAAGGATGGGACCGGCTGTATGGTGGCTTGGGGCCGTCTCTGGTGGGTACGTCCGTGTCTCAGGTAGATGGAAGGGGGGGAACTCTTGGTTCAACGTGTGTTAACGTACTGTTGACAAATCCGATATGGGTGGTTGTTACACGGATGCAGACACATAAAAAGGTCTCAAAGCCGTCTCTACCTGGTGGAGCACCTTTGACTCCTCTGGATGAAACTGTTCCGGCAGCAGTCAATCCTCCTTCCTACAGAACCACTCATGCTATTCAGGAGCTTTATGATGAAGCTGGAATCAGGGGTTTCTGGAAAGGGGTAATCCCAACATTGATCATGGTTAGCAACCCTTCTATACAGTTCATGCTGTATGAAACAATGTTGAACAAGTTGAAGAAACAACGCGCCTTACGTAAAGTTGGCAGTGGAGTTACTGCATTGGAGATATTTCTACTTGGTGCCTTGGCAAAACTTGGAGCTACTGTAGTCACCTATCCTCTTCTAGTTGTGAAGGCTCGGCTTCAGGCAAAACAGGTGGTGGCTGGAGACAAAAGACATCAGTACAAAGGCACATTTGATGCCATCATCAAAATGATCCGATACGAAGGAGTATACGGATTTTACAAAGGGATGGGCACGAAAATCGTCCAGAGTGTTCTGGCTGCTGCAGTCTTGTTCATGGTGAAGGAAGAACTGGTTCGGAGTACTCGATTCCTTCTCACCAAGGGTGCCATTGGCAGAGCAAACTCAAAGCCTCAATGA | 1896 | 51.16 | MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKPYNRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNNDKAWDDHVLDFLGGTIHWRCSGSSVPPSCDQSHSVQVEVIRDRIIALHFVCVFWCLYVYGDSKRGALNFMSDALINGLAGAGGGVIAQLITYPLQTVNTRQQTERDVKNEKRKLGTLQLMCQVVKHEGWDRLYGGLGPSLVGTSVSQVDGRGGTLGSTCVNVLLTNPIWVVVTRMQTHKKVSKPSLPGGAPLTPLDETVPAAVNPPSYRTTHAIQELYDEAGIRGFWKGVIPTLIMVSNPSIQFMLYETMLNKLKKQRALRKVGSGVTALEIFLLGALAKLGATVVTYPLLVVKARLQAKQVVAGDKRHQYKGTFDAIIKMIRYEGVYGFYKGMGTKIVQSVLAAAVLFMVKEELVRSTRFLLTKGAIGRANSKPQ | 631 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 807059 | 815995 | + | CmaCh04G001640.1 | Cma04g00164 | 291245 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00164 | 631 | PANTHER | AQUAPORIN PIP1-2 ISOFORM X2 | 1 | 272 | - | - | |
Cma04g00164 | 631 | Gene3D | Mitochondrial carrier domain | 407 | 615 | IPR023395 | - | |
Cma04g00164 | 631 | PRINTS | Major intrinsic protein family signature | 138 | 157 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | PRINTS | Major intrinsic protein family signature | 101 | 125 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | PRINTS | Major intrinsic protein family signature | 223 | 245 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | PRINTS | Major intrinsic protein family signature | 187 | 205 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | PRINTS | Major intrinsic protein family signature | 55 | 74 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | Coils | Coil | 355 | 375 | - | - | |
Cma04g00164 | 631 | Gene3D | Glycerol uptake facilitator protein. | 40 | 275 | IPR023271 | - | |
Cma04g00164 | 631 | Pfam | Major intrinsic protein | 47 | 268 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | TIGRFAM | MIP: MIP family channel proteins | 59 | 266 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 434 | 508 | IPR018108 | - | |
Cma04g00164 | 631 | ProSitePatterns | MIP family signature. | 119 | 127 | IPR022357 | - | |
Cma04g00164 | 631 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 522 | 613 | IPR018108 | - | |
Cma04g00164 | 631 | PANTHER | AQUAPORIN OR AQUAGLYCEROPORIN RELATED | 1 | 272 | IPR034294 | - | |
Cma04g00164 | 631 | CDD | MIP | 55 | 271 | IPR000425 | GO:0015267|GO:0016020|GO:0055085 | |
Cma04g00164 | 631 | SUPERFAMILY | Mitochondrial carrier | 327 | 609 | IPR023395 | - | |
Cma04g00164 | 631 | Gene3D | Mitochondrial carrier domain | 300 | 403 | IPR023395 | - | |
Cma04g00164 | 631 | SUPERFAMILY | Aquaporin-like | 46 | 261 | IPR023271 | - | |
Cma04g00164 | 631 | MobiDBLite | consensus disorder prediction | 1 | 39 | - | - | |
Cma04g00164 | 631 | ProSiteProfiles | Solute carrier (Solcar) repeat profile. | 326 | 415 | IPR018108 | - | |
Cma04g00164 | 631 | Pfam | Mitochondrial carrier protein | 331 | 402 | IPR018108 | - | |
Cma04g00164 | 631 | Pfam | Mitochondrial carrier protein | 523 | 612 | IPR018108 | - | |
Cma04g00164 | 631 | Pfam | Mitochondrial carrier protein | 412 | 512 | IPR018108 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g00164 | Cma04g02913 | CCT | |
Cma04g01129 | Cma04g00164 | CST | |
Cma04g01128 | Cma04g00164 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00164 | Cma-Chr4:807059 | Cma04g01129 | Cma-Chr4:5826721 | 0 | dispersed | |
Cma04g00163 | Cma-Chr4:804572 | Cma04g00164 | Cma-Chr4:807059 | 0 | tandem |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00164 | K09872 | - | csv:101215145 | 509.605 |