Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00164 ATGGAAGGGAAGGAAGAAGATGTGAGGCTCGGAGCCAACAAGTTCAACGAGAGGCAGCCGATTGGGACGGCGGCGCAGAGTCAGGACGATGCTAAGGACTACAAGGAGCCTCCGCCGGCTCCACTGTTCGAGCCAGAGGAGCTGACTTCATGGTCCTTTTACAGAGCCGGTATCGCGGAGTTCTTTGCCACTTTCCTCTTCCTTTACATCACCGTTTTGACTGTCATGGGCGTCGTCCGGTCCAATGAAGCCAACGGCAACACGTGCAAGACCGTTGGAATTCAGGGCATCGCTTGGGCTTTTGGTGGTATGATTTTTGCGCTGGTTTATTGCACGGCTGGAATCTCCGGTGGACACATCAACCCAGCGGTGACTTTTGGGCTTTTTCTGGCGAGGAAGCTGTCGTTGACCCGGGCGATTTTCTACATGGTGATGCAGTGCCTAGGAGCCATCTGCGGCGCCGGGGTTGTGAAGGGCTTCCAACCCAAGCCCTACAACAGGCTCGGCGGTGGTGCTAACATGGTCAGCAAAGGGTACACCAAGGGCGATGGCCTCGGTGCCGAGATTGTCGGCACCTTTATCCTTGTTTACACCGTCTTCTCTGCCACCGATGCCAAACGTAGCGCCAGAGACTCCCACGTTCCCATCCTGGCCCCGTTGCCAATTGGGTTCGCGGTGTTCTTAGTTCACTTGGCCACCATCCCAATCACCGGCACCGGCATCAACCCAGCCCGGAGCTTGGGTGCTGCCATCATCTTCAACAATGACAAAGCCTGGGATGATCACGTGCTGGATTTTCTGGGTGGGACCATTCATTGGCGCTGCTCTGGCAGCTCTGTACCACCAAGTTGTGATCAGAGCCATTCCGTTCAAGTCGAAGTGATACGTGATCGAATCATAGCCCTTCATTTCGTTTGTGTGTTTTGGTGTTTGTATGTTTATGGAGATTCGAAGCGTGGGGCCCTCAATTTTATGTCGGATGCGTTGATCAATGGATTGGCAGGAGCTGGAGGAGGGGTCATTGCTCAACTCATCACATACCCTCTTCAAACTGTGAATACTCGGCAGCAAACAGAACGCGATGTGAAGAACGAGAAGAGGAAACTTGGAACATTGCAGCTCATGTGTCAGGTTGTAAAACATGAAGGATGGGACCGGCTGTATGGTGGCTTGGGGCCGTCTCTGGTGGGTACGTCCGTGTCTCAGGTAGATGGAAGGGGGGGAACTCTTGGTTCAACGTGTGTTAACGTACTGTTGACAAATCCGATATGGGTGGTTGTTACACGGATGCAGACACATAAAAAGGTCTCAAAGCCGTCTCTACCTGGTGGAGCACCTTTGACTCCTCTGGATGAAACTGTTCCGGCAGCAGTCAATCCTCCTTCCTACAGAACCACTCATGCTATTCAGGAGCTTTATGATGAAGCTGGAATCAGGGGTTTCTGGAAAGGGGTAATCCCAACATTGATCATGGTTAGCAACCCTTCTATACAGTTCATGCTGTATGAAACAATGTTGAACAAGTTGAAGAAACAACGCGCCTTACGTAAAGTTGGCAGTGGAGTTACTGCATTGGAGATATTTCTACTTGGTGCCTTGGCAAAACTTGGAGCTACTGTAGTCACCTATCCTCTTCTAGTTGTGAAGGCTCGGCTTCAGGCAAAACAGGTGGTGGCTGGAGACAAAAGACATCAGTACAAAGGCACATTTGATGCCATCATCAAAATGATCCGATACGAAGGAGTATACGGATTTTACAAAGGGATGGGCACGAAAATCGTCCAGAGTGTTCTGGCTGCTGCAGTCTTGTTCATGGTGAAGGAAGAACTGGTTCGGAGTACTCGATTCCTTCTCACCAAGGGTGCCATTGGCAGAGCAAACTCAAAGCCTCAATGA 1896 51.16 MEGKEEDVRLGANKFNERQPIGTAAQSQDDAKDYKEPPPAPLFEPEELTSWSFYRAGIAEFFATFLFLYITVLTVMGVVRSNEANGNTCKTVGIQGIAWAFGGMIFALVYCTAGISGGHINPAVTFGLFLARKLSLTRAIFYMVMQCLGAICGAGVVKGFQPKPYNRLGGGANMVSKGYTKGDGLGAEIVGTFILVYTVFSATDAKRSARDSHVPILAPLPIGFAVFLVHLATIPITGTGINPARSLGAAIIFNNDKAWDDHVLDFLGGTIHWRCSGSSVPPSCDQSHSVQVEVIRDRIIALHFVCVFWCLYVYGDSKRGALNFMSDALINGLAGAGGGVIAQLITYPLQTVNTRQQTERDVKNEKRKLGTLQLMCQVVKHEGWDRLYGGLGPSLVGTSVSQVDGRGGTLGSTCVNVLLTNPIWVVVTRMQTHKKVSKPSLPGGAPLTPLDETVPAAVNPPSYRTTHAIQELYDEAGIRGFWKGVIPTLIMVSNPSIQFMLYETMLNKLKKQRALRKVGSGVTALEIFLLGALAKLGATVVTYPLLVVKARLQAKQVVAGDKRHQYKGTFDAIIKMIRYEGVYGFYKGMGTKIVQSVLAAAVLFMVKEELVRSTRFLLTKGAIGRANSKPQ 631
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 807059 815995 + CmaCh04G001640.1 Cma04g00164 291245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00164 631 PANTHER AQUAPORIN PIP1-2 ISOFORM X2 1 272 - -
Cma04g00164 631 Gene3D Mitochondrial carrier domain 407 615 IPR023395 -
Cma04g00164 631 PRINTS Major intrinsic protein family signature 138 157 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 PRINTS Major intrinsic protein family signature 101 125 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 PRINTS Major intrinsic protein family signature 223 245 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 PRINTS Major intrinsic protein family signature 187 205 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 PRINTS Major intrinsic protein family signature 55 74 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 Coils Coil 355 375 - -
Cma04g00164 631 Gene3D Glycerol uptake facilitator protein. 40 275 IPR023271 -
Cma04g00164 631 Pfam Major intrinsic protein 47 268 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 TIGRFAM MIP: MIP family channel proteins 59 266 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 ProSiteProfiles Solute carrier (Solcar) repeat profile. 434 508 IPR018108 -
Cma04g00164 631 ProSitePatterns MIP family signature. 119 127 IPR022357 -
Cma04g00164 631 ProSiteProfiles Solute carrier (Solcar) repeat profile. 522 613 IPR018108 -
Cma04g00164 631 PANTHER AQUAPORIN OR AQUAGLYCEROPORIN RELATED 1 272 IPR034294 -
Cma04g00164 631 CDD MIP 55 271 IPR000425 GO:0015267|GO:0016020|GO:0055085
Cma04g00164 631 SUPERFAMILY Mitochondrial carrier 327 609 IPR023395 -
Cma04g00164 631 Gene3D Mitochondrial carrier domain 300 403 IPR023395 -
Cma04g00164 631 SUPERFAMILY Aquaporin-like 46 261 IPR023271 -
Cma04g00164 631 MobiDBLite consensus disorder prediction 1 39 - -
Cma04g00164 631 ProSiteProfiles Solute carrier (Solcar) repeat profile. 326 415 IPR018108 -
Cma04g00164 631 Pfam Mitochondrial carrier protein 331 402 IPR018108 -
Cma04g00164 631 Pfam Mitochondrial carrier protein 523 612 IPR018108 -
Cma04g00164 631 Pfam Mitochondrial carrier protein 412 512 IPR018108 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00164 Cma04g02913 CCT
Cma04g01129 Cma04g00164 CST
Cma04g01128 Cma04g00164 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00164 Cma-Chr4:807059 Cma04g01129 Cma-Chr4:5826721 0 dispersed
Cma04g00163 Cma-Chr4:804572 Cma04g00164 Cma-Chr4:807059 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00164 K09872 - csv:101215145 509.605