Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00200 ATGGCAAGTCGATGGTGGGCTGAAAATATACCCACCACCACAGATAGCAGCACCACCAACCCTTATTCGACTCCATTAAAGCAAAGCTTAGAAGCTGCGGATGAAGAAAACAACTCCGGCAGCTATGAGAGAGCTGAACCAGGCACCGGCTCCACCACGCGCCGCCCACGTGGTCGGCCGCCGGGATCCAAAAACAAGATGAAGCCTCCGGTGGTAGTCACCAAGGAGAGCCCCGATGCTCTCCGGAGCCACGTTTTAGAAATCGGCAGCGGCTGCGACATCGTCGAAAGCATCTCGAACTTCGCTCAACGCCGCCAGCGAGGGGTTTCTGTCCTCGGTGGAAATGGGGTTGTCGCCAATGTCACTCTAAGGCATCCGGCCGCCCCTGGCAACGTTATTACTCTACAGGGACGGTTTGATATATTGTCGCTCTCCGGTGCCTTTTTGCCTTCCCCTGCTCCACCAGGGGCTACCGGACTAACAGTCTACTTGGCTGGCGGGCAGGGGCAGGTCGTTGGTGGCATTGTCGTCGGTGCTCTCATTGCAACCGGTCCGGTTATTGTCATTGCTGCTACCTTCACCAATGCCACATACGAGCGGCTACCGCTTGAGGATGAGGAGGCAGCTGCCGGAGACAAGTCCGGAAATAGCCAAAACAATTCAACTTCTCAGAGCATGGGGGATCAGCAACAGCAGCAGCCTTCAATGGGAAATTACAATATGACTTCAAATTTGGTGCCAAATGGTCAGGTTTCTTCTCATGATGTGTTTTGGAGTCCTCCTCGAGCCCCACCTCCATTCTAA 804 54.6 MASRWWAENIPTTTDSSTTNPYSTPLKQSLEAADEENNSGSYERAEPGTGSTTRRPRGRPPGSKNKMKPPVVVTKESPDALRSHVLEIGSGCDIVESISNFAQRRQRGVSVLGGNGVVANVTLRHPAAPGNVITLQGRFDILSLSGAFLPSPAPPGATGLTVYLAGGQGQVVGGIVVGALIATGPVIVIAATFTNATYERLPLEDEEAAAGDKSGNSQNNSTSQSMGDQQQQQPSMGNYNMTSNLVPNGQVSSHDVFWSPPRAPPPF 267
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 955547 956350 + CmaCh04G002000.1 Cma04g00200 291281
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00200 267 PIRSF ESCAROLA 8 265 IPR014476 GO:0003680
Cma04g00200 267 Gene3D - 81 210 - -
Cma04g00200 267 ProSiteProfiles PPC domain profile profile. 78 216 IPR005175 -
Cma04g00200 267 Pfam Plants and Prokaryotes Conserved (PCC) domain 82 195 IPR005175 -
Cma04g00200 267 MobiDBLite consensus disorder prediction 207 267 - -
Cma04g00200 267 MobiDBLite consensus disorder prediction 1 48 - -
Cma04g00200 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 266 IPR014476 GO:0003680
Cma04g00200 267 SUPERFAMILY AF0104/ALDC/Ptd012-like 79 208 - -
Cma04g00200 267 MobiDBLite consensus disorder prediction 1 76 - -
Cma04g00200 267 MobiDBLite consensus disorder prediction 212 255 - -
Cma04g00200 267 CDD DUF296 82 165 IPR005175 -
Cma04g00200 267 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 20 266 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00200 Cma15g00103 CCT
Cma04g01169 Cma04g00200 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00200 Cma-Chr4:955547 Cma06g01339 Cma-Chr6:8796348 2.34E-70 dispersed
Cma15g00103 Cma-Chr15:479122 Cma04g00200 Cma-Chr4:955547 2.00E-71 wgd
Cma04g00200 Cma-Chr4:955547 Cma04g01169 Cma-Chr4:5964845 4.85E-168 wgd
Cma04g00200 Cma-Chr4:955547 Cma04g02941 Cma-Chr4:19395948 1.23E-58 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00200 - - csv:101217530 437.187