Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00202 ATGACAGGGCTTACCTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCATGCGGTGCCTGCAAGTTTCTTAGACGAAAATGTAGTAATCACTGTGTTTTTGCTCCTTTCTTCACCTATGATGAAGCTACTTCTCACTTTGCTGCTGTTCATAAAGTGTTTGGTGCTAGTAATGTCTCCAAGCTTCTCTTGCACCTCCCCATGCACGTCCGAAGCCACGCTGCGATCACGGTTTCTTATGAAGCTCTCGAGCGCATGCGAGATCCTACTTATGGTTGTGTTGCACATATCTTCACGTTGCAACAAGAGATCATGAGTTTGCAAGAAGAGATAGATATGTTAGGGAGCCAAATTGCCAACTTCACCACCGATATGGACAACGTTGCAGTGGTCGAGAATCCATCTATGGAGCTTCAAGTTTCGAAACAGTTGAATGAATTGGTGATGAACACAAATGATTATCAAAACGAGTTGCTCTCTCAACTGCCGACTTTTGATGAAGTCCAAATTAATGATGCTCAAATGATATCTCCATTGTTTTGTATTGGGGAAGAAGAAGGGTTTTTCGGGTGCAACCCAAATAATGCTATGGAGAATTCAGCCTTTGATGTATCAGTTGATGAAAACTTTGCTTATCTATGGTAG 645 41.86 MTGLTSSSSSSSSSSSSCGACKFLRRKCSNHCVFAPFFTYDEATSHFAAVHKVFGASNVSKLLLHLPMHVRSHAAITVSYEALERMRDPTYGCVAHIFTLQQEIMSLQEEIDMLGSQIANFTTDMDNVAVVENPSMELQVSKQLNELVMNTNDYQNELLSQLPTFDEVQINDAQMISPLFCIGEEEGFFGCNPNNAMENSAFDVSVDENFAYLW 214
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 958291 959115 - CmaCh04G002020.1 Cma04g00202 291283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00202 214 PANTHER LOB DOMAIN CONTAINING PROTEIN 14 165 - -
Cma04g00202 214 ProSiteProfiles LOB domain profile. 16 118 IPR004883 -
Cma04g00202 214 Coils Coil 97 117 - -
Cma04g00202 214 Pfam Lateral organ boundaries (LOB) domain 17 114 IPR004883 -
Cma04g00202 214 PANTHER LOB DOMAIN-CONTAINING PROTEIN 33 14 165 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01170 Cma04g00202 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00202 Cma-Chr4:958291 Cma08g00953 Cma-Chr8:5951982 7.46E-47 dispersed
Cma04g00202 Cma-Chr4:958291 Cma04g01170 Cma-Chr4:5968312 2.89E-89 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34748 PF03195 LOB 1.10E-32 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00202 K13945 - csv:101204875 288.115