Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00211 ATGGCTGCTATTCCTATTTCTCTTCTCGCCATTATTATCTCCCTGCTCTCTGTCGACGCTAGGATCCCTGGAGTTTACTCTGGCGGCCAGTGGCAGAGCGCTCATGCTACTTTTTATGGCGGCAGTGATGCCTCTGGAACCATGGGTGGTGCTTGTGGTTACGGAAACTTGTACAGCCAAGGTTATGGCGTGAACACCGCGGCGTTGAGCACTGCTTTGTTCAACAACGGTTTAAGCTGCGGATCTTGCTTCGAGCTCAAGTGCGCTAACGATCCGCAGTGGTGCCATGCCGGCAGTCCGTCGATTTTCATCACCGCCACAAACTTTTGCCCTCCTAACTACGCTCTTCCGAGCGACAATGGCGGCTGGTGTAACCCTCCCCGTCCTCATTTTGACCTCGCAATGCCTATGTTCCTCAAGATTGCCGAGTACAGAGCCGGAATCGTTCCAGTCTCTTATCGAAGGGTGCCATGCCGGAAACAGGGAGGAATTAGGTTCACAATCAACGGCTTCCGATACTTTAATTTGGTACTGATCACAAACGTGGCTGGCGCAGGAGACATCGTGAAGGCGAGCGTGAAAGGCAGCAAAACAGAGTGGATGAGCATGAGCCGAAACTGGGGTCAAAACTGGCAATCAAACGCCGTTTTGGTCGGTCAGTCACTGTCGTTCAGGGTTACATCCAGTGACCGTCGCACCACCACTTCGTGGAACATCGTCCCTTCCAATTGGCAATTTGGCCAGACTTTCACCGGCAAGAATTTCAGGGTCTGA 774 52.58 MAAIPISLLAIIISLLSVDARIPGVYSGGQWQSAHATFYGGSDASGTMGGACGYGNLYSQGYGVNTAALSTALFNNGLSCGSCFELKCANDPQWCHAGSPSIFITATNFCPPNYALPSDNGGWCNPPRPHFDLAMPMFLKIAEYRAGIVPVSYRRVPCRKQGGIRFTINGFRYFNLVLITNVAGAGDIVKASVKGSKTEWMSMSRNWGQNWQSNAVLVGQSLSFRVTSSDRRTTTSWNIVPSNWQFGQTFTGKNFRV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1005461 1007962 + CmaCh04G002110.1 Cma04g00211 291292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00211 257 PANTHER EXPANSIN-A15 8 256 IPR002963 GO:0009664
Cma04g00211 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 173 252 IPR007117 -
Cma04g00211 257 Pfam Expansin C-terminal domain 164 241 IPR007117 -
Cma04g00211 257 Pfam Lytic transglycolase 66 153 IPR009009 -
Cma04g00211 257 SUPERFAMILY Barwin-like endoglucanases 30 181 IPR036908 -
Cma04g00211 257 SMART dpbb_1 66 153 IPR007112 -
Cma04g00211 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Cma04g00211 257 PRINTS Expansin/Lol pI family signature 48 66 IPR007118 GO:0005576
Cma04g00211 257 PRINTS Expansin/Lol pI family signature 70 88 IPR007118 GO:0005576
Cma04g00211 257 PRINTS Expansin/Lol pI family signature 146 162 IPR007118 GO:0005576
Cma04g00211 257 PRINTS Expansin/Lol pI family signature 200 214 IPR007118 GO:0005576
Cma04g00211 257 PRINTS Expansin/Lol pI family signature 238 252 IPR007118 GO:0005576
Cma04g00211 257 Gene3D - 19 159 IPR036908 -
Cma04g00211 257 PANTHER EXPANSIN-A4 8 256 - -
Cma04g00211 257 SUPERFAMILY PHL pollen allergen 160 252 IPR036749 -
Cma04g00211 257 Gene3D - 163 255 IPR036749 -
Cma04g00211 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 163 IPR007112 -
Cma04g00211 257 PRINTS Expansin signature 61 75 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 88 99 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 102 112 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 121 138 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 138 151 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 162 174 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 174 195 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 209 230 IPR002963 GO:0009664
Cma04g00211 257 PRINTS Expansin signature 238 254 IPR002963 GO:0009664
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00211 Cma04g02655 CCT
Cma04g00211 Cma04g02655 ECH
Cma04g00211 Cma04g01180 ECH
Cma04g02655 Cma04g00211 ECH
Cma04g01180 Cma04g00211 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00211 Cma-Chr4:1005461 Cma07g00999 Cma-Chr7:5154276 1.14E-164 dispersed
Cma04g02865 Cma-Chr4:19076901 Cma04g00211 Cma-Chr4:1005461 2.25E-128 dispersed
Cma06g00729 Cma-Chr6:3697164 Cma04g00211 Cma-Chr4:1005461 1.48E-95 dispersed
Cma14g01128 Cma-Chr14:8566281 Cma04g00211 Cma-Chr4:1005461 8.75E-97 dispersed
Cma15g00164 Cma-Chr15:757817 Cma04g00211 Cma-Chr4:1005461 7.38E-126 dispersed
Cma15g01184 Cma-Chr15:7491843 Cma04g00211 Cma-Chr4:1005461 4.71E-93 dispersed
Cma01g00609 Cma-Chr1:3176629 Cma04g00211 Cma-Chr4:1005461 3.31E-167 wgd
Cma13g00123 Cma-Chr13:843427 Cma04g00211 Cma-Chr4:1005461 3.00E-166 wgd
Cma02g00797 Cma-Chr2:4725802 Cma04g00211 Cma-Chr4:1005461 8.80E-173 wgd
Cma20g00396 Cma-Chr20:1904421 Cma04g00211 Cma-Chr4:1005461 1.32E-169 wgd
Cma03g00422 Cma-Chr3:4515929 Cma04g00211 Cma-Chr4:1005461 2.88E-166 wgd
Cma04g00211 Cma-Chr4:1005461 Cma04g01180 Cma-Chr4:6015443 2.93E-145 wgd
Cma04g00211 Cma-Chr4:1005461 Cma04g02655 Cma-Chr4:18055290 1.05E-142 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00211 - - csv:101218950 503.827