Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g00219 | ATGGTTTTCCCTTTGGATCTTCCTCCCAACTGGCCATCCTTCTCCAATCCACAGCAAAATAACCCTGCTCCGGATTCTGATCAGGTTTTGCTACCTCTGCCATCTTCTGGTGGTGGTGGAGGTGGTGGTGGCGGTGGCGGTGGTGGGTTCATCAGACCGGTTTCGATGACCGATCGTGCTCGGTTGGCGAAGATTCCGCAACCGGAGCCTGGATTAAAATGCCCTAGATGTGAATCTCCCAACACTAAATTCTGTTACTTTAATAATTATAATCTTTCTCAGCCTCGCCACTTTTGCAAGACGTGTCGTCGTTACTGGACGCGTGGTGGTGCGCTGAGGAATGTTCCCGTCGGTGGTGGCTGCCGGAGGAACAAGAGGGCTAAACCCCAGAATCGGTCCAAGTCTCCGACGGCGGGCGAGCGACCAAGCTCGGCTAATTCAACGCCTGCAGTTTCACTTTCAGCTCAACCCCATTTGCCCTTTTTGTCATCTTTACATAATTTCTCTAATTACCTAAACTTGGGGATAATTCCGCCGCCGCCACCTCCTCCAACAAGCAGTGGCGCCGCCGCCGCCGGAGGACCGGATATTCATGAATTTCACGGTGACCATTGGAGATTACAACAACCACAGCAATTCCCTATCTTGGCTAATAATCAACAACCTAATCTACTTTACACTTTCGACCCACCAGAAAGCGCGACGACTCGATACAATCTAAACGGGCTATCGAGATTAGAGATGGAGAACAACGTCGGAATGGCGATGGCGGGAACAGTGAAGGTGGAAGAGAGTAAAGCAATGAACTTGGGGAAGAATTTCCAATTCTGGGTCGGTGGCGGCGACACGAATACTTGGAGCACCGGCGCCGATCTTCACAGCTTCGCTACGTCCTCCGCCGAACACTTATCCAGACAGTAA | 921 | 51.47 | MVFPLDLPPNWPSFSNPQQNNPAPDSDQVLLPLPSSGGGGGGGGGGGGGFIRPVSMTDRARLAKIPQPEPGLKCPRCESPNTKFCYFNNYNLSQPRHFCKTCRRYWTRGGALRNVPVGGGCRRNKRAKPQNRSKSPTAGERPSSANSTPAVSLSAQPHLPFLSSLHNFSNYLNLGIIPPPPPPPTSSGAAAAGGPDIHEFHGDHWRLQQPQQFPILANNQQPNLLYTFDPPESATTRYNLNGLSRLEMENNVGMAMAGTVKVEESKAMNLGKNFQFWVGGGDTNTWSTGADLHSFATSSAEHLSRQ | 306 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1060358 | 1061844 | + | CmaCh04G002190.1 | Cma04g00219 | 291300 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g00219 | 306 | ProSitePatterns | Zinc finger Dof-type signature. | 74 | 110 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma04g00219 | 306 | Pfam | Dof domain, zinc finger | 72 | 126 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma04g00219 | 306 | PANTHER | DOF ZINC FINGER PROTEIN DOF1.4-RELATED | 19 | 299 | IPR045174 | GO:0003700|GO:0006355 | |
| Cma04g00219 | 306 | MobiDBLite | consensus disorder prediction | 116 | 152 | - | - | |
| Cma04g00219 | 306 | MobiDBLite | consensus disorder prediction | 12 | 26 | - | - | |
| Cma04g00219 | 306 | MobiDBLite | consensus disorder prediction | 1 | 50 | - | - | |
| Cma04g00219 | 306 | ProSiteProfiles | Zinc finger Dof-type profile. | 72 | 126 | IPR003851 | GO:0003677|GO:0006355 | |
| Cma04g00219 | 306 | MobiDBLite | consensus disorder prediction | 131 | 152 | - | - | |
| Cma04g00219 | 306 | PANTHER | DOF DOMAIN ZINC FINGER PROTEIN | 19 | 299 | - | - |
Event-related genes
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| Cma04g01188 | Cma04g00219 | CST |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma01g00527 | Cma-Chr1:2730457 | Cma04g00219 | Cma-Chr4:1060358 | 2.27E-37 | dispersed | |
| Cma03g00997 | Cma-Chr3:7015081 | Cma04g00219 | Cma-Chr4:1060358 | 4.36E-33 | dispersed | |
| Cma07g00725 | Cma-Chr7:3196351 | Cma04g00219 | Cma-Chr4:1060358 | 4.23E-32 | dispersed | |
| Cma16g00738 | Cma-Chr16:3915139 | Cma04g00219 | Cma-Chr4:1060358 | 4.38E-34 | dispersed | |
| Cma20g00463 | Cma-Chr20:2233484 | Cma04g00219 | Cma-Chr4:1060358 | 3.13E-36 | dispersed | |
| Cma01g00595 | Cma-Chr1:3123663 | Cma04g00219 | Cma-Chr4:1060358 | 3.78E-62 | wgd | |
| Cma13g00133 | Cma-Chr13:909757 | Cma04g00219 | Cma-Chr4:1060358 | 5.10E-47 | wgd | |
| Cma14g00157 | Cma-Chr14:642222 | Cma04g00219 | Cma-Chr4:1060358 | 9.44E-47 | wgd | |
| Cma15g00398 | Cma-Chr15:1778177 | Cma04g00219 | Cma-Chr4:1060358 | 3.07E-51 | wgd | |
| Cma02g00812 | Cma-Chr2:4795103 | Cma04g00219 | Cma-Chr4:1060358 | 1.52E-48 | wgd | |
| Cma20g00412 | Cma-Chr20:1971141 | Cma04g00219 | Cma-Chr4:1060358 | 4.45E-48 | wgd | |
| Cma03g00431 | Cma-Chr3:4562700 | Cma04g00219 | Cma-Chr4:1060358 | 3.02E-41 | wgd | |
| Cma04g00219 | Cma-Chr4:1060358 | Cma04g01188 | Cma-Chr4:6067895 | 1.47E-127 | wgd | |
| Cma04g00219 | Cma-Chr4:1060358 | Cma04g02639 | Cma-Chr4:17995394 | 1.40E-48 | wgd | |
| Cma04g00219 | Cma-Chr4:1060358 | Cma06g00304 | Cma-Chr6:1443954 | 2.60E-45 | wgd | |
| Cma04g00219 | Cma-Chr4:1060358 | Cma07g00977 | Cma-Chr7:4730534 | 4.55E-39 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34749 | PF02701 | zf-Dof | 1.20E-31 | No_clan | Cma | TF |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g00219 | - | - | csv:101220381 | 432.565 |