Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00220 ATGGCAGATTCTGAGGATATTCAGCCTCTCGTTTGTGATAATGGAACGGGAATGGTCAAGGCTGGGTTTGCTGGAGATGATGCCCCAAGAGCTGTGTTTCCTAGTATCGTAGGTCGTCCTCGCCACACTGGTGTGATGGTTGGGATGGGTCAGAAAGATGCTTATGTTGGTGATGAGGCTCAATCCAAGCGTGGTATTTTGACACTGAAATATCCAATTGAGCATGGTATTGTTAGTAACTGGGACGACATGGAAAAGATTTGGCATCATACTTTCTATAATGAGCTTCGTGTTGCACCAGAGGAACACCCAGTTCTCCTAACCGAGGCTCCTCTTAATCCAAAGGCCAATCGTGAGAAGATGACACAAATCATGTTTGAGACATTCAATACTCCAGCTATGTACGTGGCCATTCAAGCTGTTCTTTCCTTGTATGCAAGTGGACGTACAACTGGAATTGTGATGGACTCTGGTGATGGTGTCAGTCATACGGTTCCTATATACGAGGGGTATGCCCTCCCACACGCCATCCTTCGTCTTGATCTGGCTGGTCGTGATCTCACAGATAACCTGATGAAAATCCTCACTGAGCGTGGGTACTCTTTCACCACATCTGCAGAGCGGGAAATTGTGAGAGATATGAAAGAAAAGCTGGCATATATTGCCCTTGATTATGAACAGGAGATGGAGACATCCAAGACCAGCTCGTCTGTCGAAAAGAGCTATGAATTGCCTGATGGACAGGTGATCACCATCGGATCGGAGAGATTCAGATGTCCTGAAGTTCTTTTCCAACCTTCCATGATAGGAATGGAAGCAGCAGGCATTCATGAGACTACATACAACTCCATCATGAAGTGTGATGTGGATATCAGAAAGGACCTGTATGGCAACATTGTCCTATCTGGTGGTTCGACCATGTTCACCGGCATCGCTGATAGAATGAGCAAGGAAATCTCTGCCCTCGCCCCTAGCAGCATGAAGATAAAGGTCGTGGCGCCACCTGAGAGAAAGTACAGTGTCTGGATTGGAGGATCCATCCTGGCATCCCTTAGCACCTTCCAACAGATGTGGATTGCCAAGGCAGAGTATGATGAATCTGGACCGTCGATTGTGCACAGGAAATGCTTCTAA 1134 47.0 MADSEDIQPLVCDNGTGMVKAGFAGDDAPRAVFPSIVGRPRHTGVMVGMGQKDAYVGDEAQSKRGILTLKYPIEHGIVSNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVMDSGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDNLMKILTERGYSFTTSAEREIVRDMKEKLAYIALDYEQEMETSKTSSSVEKSYELPDGQVITIGSERFRCPEVLFQPSMIGMEAAGIHETTYNSIMKCDVDIRKDLYGNIVLSGGSTMFTGIADRMSKEISALAPSSMKIKVVAPPERKYSVWIGGSILASLSTFQQMWIAKAEYDESGPSIVHRKCF 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1062715 1065178 + CmaCh04G002200.1 Cma04g00220 291301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00220 377 PRINTS Actin signature 28 37 IPR004000 -
Cma04g00220 377 PRINTS Actin signature 51 62 IPR004000 -
Cma04g00220 377 PRINTS Actin signature 63 85 IPR004000 -
Cma04g00220 377 PRINTS Actin signature 117 130 IPR004000 -
Cma04g00220 377 PRINTS Actin signature 142 161 IPR004000 -
Cma04g00220 377 PRINTS Actin signature 238 254 IPR004000 -
Cma04g00220 377 ProSitePatterns Actins and actin-related proteins signature. 106 118 IPR020902 -
Cma04g00220 377 SMART actin_3 7 377 IPR004000 -
Cma04g00220 377 Gene3D - 140 340 - -
Cma04g00220 377 PANTHER ACTIN 1 376 IPR004000 -
Cma04g00220 377 ProSitePatterns Actins signature 1. 55 65 IPR004001 -
Cma04g00220 377 SUPERFAMILY Actin-like ATPase domain 6 154 IPR043129 -
Cma04g00220 377 Gene3D Actin; Chain A, domain 4 182 273 - -
Cma04g00220 377 Gene3D - 10 371 - -
Cma04g00220 377 CDD NBD_sugar-kinase_HSP70_actin 10 183 - -
Cma04g00220 377 PANTHER ACTIN-97 1 376 - -
Cma04g00220 377 Pfam Actin 5 377 IPR004000 -
Cma04g00220 377 ProSitePatterns Actins signature 2. 358 366 IPR004001 -
Cma04g00220 377 SUPERFAMILY Actin-like ATPase domain 149 377 IPR043129 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00220 Cma15g00386 CCT
Cma04g01189 Cma04g00220 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00220 Cma-Chr4:1062715 Cma06g00102 Cma-Chr6:551928 0 dispersed
Cma04g00220 Cma-Chr4:1062715 Cma04g01189 Cma-Chr4:6071036 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00220 K10355 - csv:101220611 744.577