Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00224 ATGAACTCAACTGAACAACACAACAAGAGATACACAAAAGGGTTTGAAATGGAGCGTTTTGGAAGGCTTTTTGGATTGGCTAAGCCATATTTGATGGTCATTTTTGTGCAGTTTGGTTATGCTGGAATGACCATTCTTGTTAAGTCTGCCTTGGACAAAGGCATGAGCCCACATGTGTTTGTGGTTTATCGTTATGCTGTTGCTACTCTTGTCATTGCTCCTTTTGCCATTATCTTTGACAGGAAGGCGAGGACCAAGATGACCTTTTCAATACTCTACAAGATTGTGTTGATGGGTTTATTGGAGCCAGTGATCGATCAAAACTTGTACACTACTGGTATGAAGCTCACAACAGCAACCTTTTCAGCTGCCATGGGCAATATTCTACCAGCTTTTTCTTTCCTCATGGCTTGGGCTAGCAGGCTTGAGAAAGTGAGTATTTTGAAAAGGGGAAGCCAAGCAAAGATCTTAGGAACCATAGTGACAGTTGGAGGAGCTATGATTATGACGTTCATAAGAGGGCCAATGTTGAATCTGCCATGGACAAAAGGGAGCCAGCCCTCTGCTTCTTCTGGTGGCTCTGCAACTCACCAGAGCCCACTTAAGGGCTCACTCATGATAGCAACTGGCTGCATTTGCTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGGAAGAGTACCCGGCCGAGCTGTCGCTTACGGCATTGATATGTTTGGTGGGCACCATTGGAGGGTCTGGGGTGGCTTGGATCATTGAGAGGGGGAACCCTGCTGCTTGGGTTTTGCACTTTGACAGTCAGTTTCTCGCTGTTGTTTATTCTGGAGTAATATGTACAGGTGTGACTTATTACCTTCAAGGAGTAGTGATGCAAACAAAAGGGCCTGTTTTTGTGACAGCATTCAGTCCTCTGGGCATGGTTCTTGTCGCAGTCATGAGCTCCTTCATATTGGGTGAGATGATGTTGTTGGGCAGGGTTCTTGGAGCAGTGGTCATAATCAGTGGCTTGTATTTGGTTCTGTGGGGCAAAAGCAAAGATGATCATCTTTCACCTAAATCTGAGTGTGATAAGATATCACCTTGTGAGCAAAAAATGATTGGAAAGGATGAGTCTTTGAAGATGGTTCAATCAAATGACGAATTTGTGGTGCTTCATCTCGCCCGAGAGGAGAAACATTGA 1182 44.84 MNSTEQHNKRYTKGFEMERFGRLFGLAKPYLMVIFVQFGYAGMTILVKSALDKGMSPHVFVVYRYAVATLVIAPFAIIFDRKARTKMTFSILYKIVLMGLLEPVIDQNLYTTGMKLTTATFSAAMGNILPAFSFLMAWASRLEKVSILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKGSQPSASSGGSATHQSPLKGSLMIATGCICWSAFITLQAITLEEYPAELSLTALICLVGTIGGSGVAWIIERGNPAAWVLHFDSQFLAVVYSGVICTGVTYYLQGVVMQTKGPVFVTAFSPLGMVLVAVMSSFILGEMMLLGRVLGAVVIISGLYLVLWGKSKDDHLSPKSECDKISPCEQKMIGKDESLKMVQSNDEFVVLHLAREEKH 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1085071 1087992 + CmaCh04G002240.1 Cma04g00224 291305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00224 393 Pfam EamA-like transporter family 28 169 IPR000620 GO:0016020|GO:0016021
Cma04g00224 393 Pfam EamA-like transporter family 202 341 IPR000620 GO:0016020|GO:0016021
Cma04g00224 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 263 346 - -
Cma04g00224 393 PANTHER WAT1-RELATED PROTEIN 25 353 IPR030184 GO:0016021|GO:0022857
Cma04g00224 393 PANTHER WAT1-RELATED PROTEIN 25 353 - -
Cma04g00224 393 SUPERFAMILY Multidrug resistance efflux transporter EmrE 63 171 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00224 Cma-Chr4:1085071 Cma04g01198 Cma-Chr4:6111240 0 dispersed
Cma04g00224 Cma-Chr4:1085071 Cma04g00225 Cma-Chr4:1090737 0 tandem
Cma04g01783 Cma-Chr4:8994980 Cma04g00224 Cma-Chr4:1085071 0 transposed
Cma15g00409 Cma-Chr15:1834809 Cma04g00224 Cma-Chr4:1085071 1.18E-130 wgd
Cma03g00442 Cma-Chr3:4615905 Cma04g00224 Cma-Chr4:1085071 8.43E-141 wgd
Cma04g00224 Cma-Chr4:1085071 Cma04g01197 Cma-Chr4:6104958 2.79E-166 wgd
Cma04g00224 Cma-Chr4:1085071 Cma04g02624 Cma-Chr4:17910496 4.71E-142 wgd
Cma04g00224 Cma-Chr4:1085071 Cma07g00964 Cma-Chr7:4659149 1.57E-140 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00224 - - cmos:111458151 612.838