Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00225 ATGGAGGGTTTTGGGAGGCTTTTTGAATTGGCTAAGCCATATTTAGTGGTCGTTTTTGTGCAGTTTGGCTATGCTGGAATGACCATTCTTGCTAAGTCTGCCTTGGACAAAGGCATGAGCCCACATGTCTTTGTGGTTTATCGTCATGCTGTTGCTACTCTTGTCATTGCTCCTTTCGCCATTATCTTTGACAGGAAGGCAAGGACGAAGATGACTTTTTCGATATTATGGAAGATTGTGTTGATGGGTTTATTGGAGCCAGTGATCGATCAAAACTTGTACTTTACTGGTATGAAGCTCACAACAGCAACGTTTACAGCAGCCATGTGCAATATTCTACCAGCTTTTTCTTTCCTCATGGCTTGGGCTTGCAGGCTTGAGAAAGTGAGTATTTTGAAAAGGGGAAGCCAAGCGAAGATCCTAGGAACCATAGTGACCGTAGGAGGAGCTATGATTATGACGTTCATAAGAGGGCCAATGTTGAATCTTCCATGGACAAAAGGGAGCCAGCCCTCTGCTTCTTCTGGTGGCTCTGCAACTCACCAGAGCCCACTCAAGGGCTCACTCATGATAGCAACTGGCTGCATTTGCTGGTCAGCTTTCATCACTCTTCAGGCGATTACATTGAAAGAGTACCCGGTCGAGCTGTCGCTTACGGCATTGATATGCTTGGTGGGCACCATTGGAGGGTCTGGGGTGGCTTTGATCATTGAGAGGGGGAACCCTGCAGCTTGGGTTTTGCACTTTGACAGTCAGCTTCTGGCGGTTGTTTATGCTGGAGTAATATGTACAGGGGTGACTTATTACATTCAAGGAGTAGTGATGCAAACAAAAGGGCCTGTTTTTGTGACAGCATTCAGTCCTTTGAGCATGATTCTTGTTGCAATCATGAGCTCCTTCATCTTGGCCGAGATAATGTTGTTGGGAAGGGTTCTTGGAGCAGTGGCCATTATCAGTGGCTTGTATTTGGTTCTGTGGGGCAAAAGCAAAGATCAAGCTTCTGTTAAATTAGAGTGTGATAAGATAACACCTTGTGAGCAACAAATGGCTGGAAATGGTGAAGAATTTGTGGTGGTTGATGTTACCAAAGAGGTCACAAATTGA 1104 45.38 MEGFGRLFELAKPYLVVVFVQFGYAGMTILAKSALDKGMSPHVFVVYRHAVATLVIAPFAIIFDRKARTKMTFSILWKIVLMGLLEPVIDQNLYFTGMKLTTATFTAAMCNILPAFSFLMAWACRLEKVSILKRGSQAKILGTIVTVGGAMIMTFIRGPMLNLPWTKGSQPSASSGGSATHQSPLKGSLMIATGCICWSAFITLQAITLKEYPVELSLTALICLVGTIGGSGVALIIERGNPAAWVLHFDSQLLAVVYAGVICTGVTYYIQGVVMQTKGPVFVTAFSPLSMILVAIMSSFILAEIMLLGRVLGAVAIISGLYLVLWGKSKDQASVKLECDKITPCEQQMAGNGEEFVVVDVTKEVTN 367
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1090737 1093064 + CmaCh04G002250.1 Cma04g00225 291306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00225 367 Pfam EamA-like transporter family 13 153 IPR000620 GO:0016020|GO:0016021
Cma04g00225 367 Pfam EamA-like transporter family 186 325 IPR000620 GO:0016020|GO:0016021
Cma04g00225 367 PANTHER WAT1-RELATED PROTEIN 9 340 - -
Cma04g00225 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 47 155 - -
Cma04g00225 367 SUPERFAMILY Multidrug resistance efflux transporter EmrE 245 330 - -
Cma04g00225 367 PANTHER WAT1-RELATED PROTEIN 9 340 IPR030184 GO:0016021|GO:0022857
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00225 Cma04g02624 CCT
Cma04g00225 Cma04g01198 ECH
Cma04g02624 Cma04g00225 ECH
Cma04g00225 Cma04g02624 ECH
Cma04g01198 Cma04g00225 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00225 Cma-Chr4:1090737 Cma04g01783 Cma-Chr4:8994980 0 dispersed
Cma04g00224 Cma-Chr4:1085071 Cma04g00225 Cma-Chr4:1090737 0 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00225 - - cmos:111458151 668.307