Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00232 | ATGGTGGGCTCTGAGGAGGACTCTGCTACTGCTGGGGACGCGGTGCAGCTTTCTGGTGGAAATCGGAAATTGTTCTGGCGCTCGGCTTCTTGGTCTGCGTCACGGTCCTCCCTTCACCATCCTGATGTGAACAAAGATGGTGGAGACCCCAGTGGGCATCTTGGAGATAGTAATGGAACAAGCCGAATTTTCCATTCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATAGCCCGGCGAAGCTTGGATGAGTGGCCCAAAGCAGGGTCGGACGACATAGGGGAGTGGCTGCAACCTCCTACTCCAAGTGGGAGAGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCGGATAAGAATTGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGCTCGAAAGTGGCGGATCATGTATATCTTGGTGGAGACGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGCTTCGTTTGCCCGGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATCACTAGCATTCTGTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCAACCTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCTGACCCGAATATGGGTTTTGCTTGCCAATTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCATTGTTGAGGATGTATAGAGTTGCCCCACACTCACCATATGATCCTTTGCATCTTGTCCCCAAAATGTTGAATGATCCTTCACCATCTGCCCTCGATTCTAGAGGTGCTTTTATCATTCATATACCATCTGCCATATTTGTTTGGATTGGTAAGAACTGTAGAGCAATCATGGAAAGGGATGCAAGGGGGGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAATAAACTTTTGGGATTCCTTTGCAAACCTGTTACCTCTAATGGATAAATCCAACAGTAAAATCATTCCTGGGGAGTTAAAAGGTAAACCTTATCCAGGCGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATAACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAATGAGCACGAAACCCATCTTCCTGTTAGAGAAAGCAATTGGAGTATGCTTAGGCGTAAGTTTGCCTCAGGGAACATGAAAGATTTCGTATCAGCTCCTCGAGTATCTCTGTCTAGGGTCTATTCAGACTCGTCGATGATGGTGCATTTTTCTGCAAAATCCTCATCGCCTTCAACGTTTTCTTTGTCTTCATCATCTTCTTCACCTGTCTATCTTTCTCCAGATTCCCTCTCTTCTGATTCAGGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAGTCCTCTTTAGATTCTCCATCTGCATCTTCACCTTCAGTTCCAGCTTCTTCATCTCTGTCTAGTTTTTCGAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCTGAAACTCGTGATGCAGTCCTCTTGGAATCAAGTTCTCACTCACTCTTATTCTCATCTAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTTCAAAGTCTCTGACATTGCCTACAATGCCCTGTAAAATCAGAGCAACAAATAGTGCCTCAAGATTTCTTGCCACTCAAGAAGATAGTAAGAGGAAAAACAAGAATTCTTTCTCTCTTAATGTATTAATTAATATGAAAAAGGACTCAGAGCCTACAGATAGGGTTGCAAATGAACAGACAAGTTCCACTCAGAATTTCAAGAATTTTGAAAATGGAATCGATGTAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAAAGTTGATGCACAATCTACTAGTTCATGGAAAAGCTATCCCAAACCTTTTGAAAAAGGCATGCTATCCACCACTGTGTCTGGGAAACAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAATTAGAAAGGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTTTAGCGATCTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTTTATGTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCGAGTAAAGAGGGATAACGACTTGGTTGATTTAGAGAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACTGAAGTAGGTCTGCAAGAAAATGCAGAAATTAAGATCGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAATAAAGTTGTGTTAAAAGCAGAGCAGGTTGGTTGTTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGCTGACAGCAGCAAGAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTTCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCCAAATATCCAAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAAATCGAGGATAATAACACCCTTGTTTTCATTGTTGACATTCGTGCAGACAAGAAAAAGATTAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTTAACACTTTAATCAGACCCGATGGAACGAAGAAGGCGTACGTTAGGTTAACTCCGGATTACGATGCGTTGGATGTGGCAAACAAGATTGGTATCATCTAA | 3072 | 42.74 | MVGSEEDSATAGDAVQLSGGNRKLFWRSASWSASRSSLHHPDVNKDGGDPSGHLGDSNGTSRIFHSPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWLQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCRAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPINFWDSFANLLPLMDKSNSKIIPGELKGKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESNWSMLRRKFASGNMKDFVSAPRVSLSRVYSDSSMMVHFSAKSSSPSTFSLSSSSSSPVYLSPDSLSSDSGSSSSSSSKYFSESSLDSPSASSPSVPASSSLSSFSNMSLISSNSSLESVPNGPETRDAVLLESSSHSLLFSSKKFSPSLAERRGSSKSLTLPTMPCKIRATNSASRFLATQEDSKRKNKNSFSLNVLINMKKDSEPTDRVANEQTSSTQNFKNFENGIDVRVGSVASCQQETKVDAQSTSSWKSYPKPFEKGMLSTTVSGKQDGEFVQPMVYCWPELERIAAFDTSYLNSKAALAIFSPSRYLGKKDDMMLFMWVGSSFDHDLSQVRVKRDNDLVDLEKIDWVKVGQYVLTEVGLQENAEIKIVKEGEETEEFLARLNKVVLKAEQVGCSGPGSSAMAPKADSSKKADPKAQALKAAKAVKAGSTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII | 1023 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1128648 | 1134765 | - | CmaCh04G002320.1 | Cma04g00232 | 291313 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00232 | 1023 | Hamap | 50S ribosomal protein L23 [rplW]. | 943 | 1023 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00232 | 1023 | SUPERFAMILY | Ribosomal proteins S24e, L23 and L15e | 941 | 1016 | IPR012678 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00232 | 1023 | MobiDBLite | consensus disorder prediction | 32 | 69 | - | - | |
Cma04g00232 | 1023 | PANTHER | PROTEIN-TYROSINE-PHOSPHATASE MKP1 | 1 | 848 | - | - | |
Cma04g00232 | 1023 | ProSitePatterns | Ribosomal protein L23 signature. | 1001 | 1016 | IPR001014 | - | |
Cma04g00232 | 1023 | SMART | VILL_6 | 302 | 399 | IPR007122 | GO:0051015 | |
Cma04g00232 | 1023 | MobiDBLite | consensus disorder prediction | 54 | 69 | - | - | |
Cma04g00232 | 1023 | SUPERFAMILY | (Phosphotyrosine protein) phosphatases II | 148 | 294 | IPR029021 | - | |
Cma04g00232 | 1023 | Pfam | Ribosomal protein L23 | 943 | 1004 | IPR013025 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00232 | 1023 | Pfam | Dual specificity phosphatase, catalytic domain | 161 | 291 | IPR000340 | GO:0008138|GO:0016311 | |
Cma04g00232 | 1023 | ProSitePatterns | Tyrosine specific protein phosphatases active site. | 237 | 247 | IPR016130 | GO:0016311|GO:0016791 | |
Cma04g00232 | 1023 | Gene3D | - | 904 | 1023 | IPR012677 | - | |
Cma04g00232 | 1023 | Pfam | Ribosomal protein L23, N-terminal domain | 884 | 932 | IPR005633 | - | |
Cma04g00232 | 1023 | PANTHER | MKPA PROTEIN | 1 | 848 | - | - | |
Cma04g00232 | 1023 | ProSiteProfiles | Dual specificity protein phosphatase domain profile. | 153 | 295 | IPR020422 | GO:0006470|GO:0008138 | |
Cma04g00232 | 1023 | ProSiteProfiles | Tyrosine specific protein phosphatases domain profile. | 212 | 273 | IPR000387 | GO:0016311|GO:0016791 | |
Cma04g00232 | 1023 | MobiDBLite | consensus disorder prediction | 102 | 121 | - | - | |
Cma04g00232 | 1023 | SUPERFAMILY | Actin depolymerizing proteins | 300 | 401 | - | - | |
Cma04g00232 | 1023 | Gene3D | Severin | 304 | 399 | IPR029006 | - | |
Cma04g00232 | 1023 | SMART | dsp_5 | 153 | 292 | IPR020422 | GO:0006470|GO:0008138 | |
Cma04g00232 | 1023 | Gene3D | Protein tyrosine phosphatase superfamily | 140 | 295 | IPR029021 | - | |
Cma04g00232 | 1023 | CDD | DSP | 154 | 288 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g01207 | Cma04g00232 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00232 | Cma-Chr4:1128648 | Cma04g01778 | Cma-Chr4:8943123 | 0 | dispersed | |
Cma11g01941 | Cma-Chr11:12763870 | Cma04g00232 | Cma-Chr4:1128648 | 5.19E-12 | dispersed | |
Cma19g01054 | Cma-Chr19:8886613 | Cma04g00232 | Cma-Chr4:1128648 | 1.95E-09 | dispersed | |
Cma04g01207 | Cma-Chr4:6155331 | Cma04g00232 | Cma-Chr4:1128648 | 0 | transposed | |
Cma10g00020 | Cma-Chr10:79961 | Cma04g00232 | Cma-Chr4:1128648 | 2.32E-20 | transposed | |
Cma15g00414 | Cma-Chr15:1859116 | Cma04g00232 | Cma-Chr4:1128648 | 1.44E-73 | wgd | |
Cma04g00232 | Cma-Chr4:1128648 | Cma04g01206 | Cma-Chr4:6150729 | 1.39E-84 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00232 | - | - | csv:101223210 | 1391.33 |