Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00232 ATGGTGGGCTCTGAGGAGGACTCTGCTACTGCTGGGGACGCGGTGCAGCTTTCTGGTGGAAATCGGAAATTGTTCTGGCGCTCGGCTTCTTGGTCTGCGTCACGGTCCTCCCTTCACCATCCTGATGTGAACAAAGATGGTGGAGACCCCAGTGGGCATCTTGGAGATAGTAATGGAACAAGCCGAATTTTCCATTCTCCATTAACTCCAAGATCACAGCAGCATTGCAAAGCAAGGTCGTGTTTGCCTCCTTTACAGCCTTTGTCGATAGCCCGGCGAAGCTTGGATGAGTGGCCCAAAGCAGGGTCGGACGACATAGGGGAGTGGCTGCAACCTCCTACTCCAAGTGGGAGAGGAAATGGGGAGAGGTTGAAACTTGATTTGTCGACAATTCAGAGAAATCCGGATAAGAATTGTGGGCTTGTGAAGAGGGATAAGATTGCTTTCTTTGACAAAGAGTGCTCGAAAGTGGCGGATCATGTATATCTTGGTGGAGACGCGGTTGCTCGAGATAGGGATATACTTAAACAGAATGGAATTACTCATGTGTTGAATTGTGTAGGCTTCGTTTGCCCGGAGTACTTCAAAGATGATTTCGTGTACAGAACTTTGTGGTTGCAGGATAGCCCATCTGAGGATATCACTAGCATTCTGTATGATGTTTTTGACTACTTTGAAGATGTTAGAGAACAAAGTGGAAGGGTTTTTGTTCATTGTTGCCAGGGAGTATCCCGGTCAACCTCGTTGGTGATTGCCTATCTGATGTGGAGAGAAGGGCAGAGTTTTGATGATGCATTTCAATATGTAAAGGCAGCAAGAGGTATTGCTGACCCGAATATGGGTTTTGCTTGCCAATTATTACAGTGCCAAAAGAGGGTCCATGCTTTCCCTCTTAGCCCAAGTTCATTGTTGAGGATGTATAGAGTTGCCCCACACTCACCATATGATCCTTTGCATCTTGTCCCCAAAATGTTGAATGATCCTTCACCATCTGCCCTCGATTCTAGAGGTGCTTTTATCATTCATATACCATCTGCCATATTTGTTTGGATTGGTAAGAACTGTAGAGCAATCATGGAAAGGGATGCAAGGGGGGCTGTTGTGCAGATTGTTCGGTATGAGAGAGTGCAAGGGCCTATATATGTAATTAAGGAAGGGGAAGAACCAATAAACTTTTGGGATTCCTTTGCAAACCTGTTACCTCTAATGGATAAATCCAACAGTAAAATCATTCCTGGGGAGTTAAAAGGTAAACCTTATCCAGGCGAGAGGAAAGTTGATTCCTATGATGTGGATTTTGAAATTTTTCAGAAGGCTATAACTGGTGGTTTTGTTCCTCCATTTCCTTCATCTGAGAATGAGCACGAAACCCATCTTCCTGTTAGAGAAAGCAATTGGAGTATGCTTAGGCGTAAGTTTGCCTCAGGGAACATGAAAGATTTCGTATCAGCTCCTCGAGTATCTCTGTCTAGGGTCTATTCAGACTCGTCGATGATGGTGCATTTTTCTGCAAAATCCTCATCGCCTTCAACGTTTTCTTTGTCTTCATCATCTTCTTCACCTGTCTATCTTTCTCCAGATTCCCTCTCTTCTGATTCAGGTTCAAGTTCAAGTTCAAGTTCCAAGTATTTTTCAGAGTCCTCTTTAGATTCTCCATCTGCATCTTCACCTTCAGTTCCAGCTTCTTCATCTCTGTCTAGTTTTTCGAACATGTCTCTTATCTCATCCAATAGTTCCTTAGAATCTGTGCCCAATGGTCCTGAAACTCGTGATGCAGTCCTCTTGGAATCAAGTTCTCACTCACTCTTATTCTCATCTAAAAAGTTCTCACCTTCTCTTGCAGAACGCCGAGGTAGTTCAAAGTCTCTGACATTGCCTACAATGCCCTGTAAAATCAGAGCAACAAATAGTGCCTCAAGATTTCTTGCCACTCAAGAAGATAGTAAGAGGAAAAACAAGAATTCTTTCTCTCTTAATGTATTAATTAATATGAAAAAGGACTCAGAGCCTACAGATAGGGTTGCAAATGAACAGACAAGTTCCACTCAGAATTTCAAGAATTTTGAAAATGGAATCGATGTAAGGGTAGGTAGTGTGGCCTCGTGCCAGCAGGAAACTAAAGTTGATGCACAATCTACTAGTTCATGGAAAAGCTATCCCAAACCTTTTGAAAAAGGCATGCTATCCACCACTGTGTCTGGGAAACAAGATGGTGAGTTTGTCCAACCTATGGTATACTGTTGGCCGGAATTAGAAAGGATTGCAGCTTTTGACACAAGTTACCTCAATTCTAAAGCTGCTTTAGCGATCTTCTCTCCAAGTAGGTATTTAGGCAAGAAGGATGACATGATGCTGTTTATGTGGGTAGGAAGTTCTTTTGACCATGATTTATCTCAGGTTCGAGTAAAGAGGGATAACGACTTGGTTGATTTAGAGAAGATAGACTGGGTTAAAGTTGGTCAATATGTACTTACTGAAGTAGGTCTGCAAGAAAATGCAGAAATTAAGATCGTTAAAGAAGGTGAAGAAACAGAGGAATTTCTTGCACGATTGAATAAAGTTGTGTTAAAAGCAGAGCAGGTTGGTTGTTCTGGTCCAGGATCTTCAGCAATGGCACCTAAAGCTGACAGCAGCAAGAAGGCTGATCCTAAGGCGCAAGCCTTGAAGGCTGCCAAGGCAGTTAAGGCTGGTTCAACTTTCAAGCCGAAGGCTAAGAAGATCAGAACATCAGTTACATTCCATAGGCCAAAGACATTGAAGAAAGACAGGAATCCCAAATATCCAAGAATCAGTGCAACTCCAAGGAACAAGTTGGACCAATATCAAATTCTTAAATATCCACTGACCACCGAGTCAGCAATGAAGAAAATCGAGGATAATAACACCCTTGTTTTCATTGTTGACATTCGTGCAGACAAGAAAAAGATTAAGGATGCCGTGAAGAAGATGTATGATATTCAGACCAAGAAAGTTAACACTTTAATCAGACCCGATGGAACGAAGAAGGCGTACGTTAGGTTAACTCCGGATTACGATGCGTTGGATGTGGCAAACAAGATTGGTATCATCTAA 3072 42.74 MVGSEEDSATAGDAVQLSGGNRKLFWRSASWSASRSSLHHPDVNKDGGDPSGHLGDSNGTSRIFHSPLTPRSQQHCKARSCLPPLQPLSIARRSLDEWPKAGSDDIGEWLQPPTPSGRGNGERLKLDLSTIQRNPDKNCGLVKRDKIAFFDKECSKVADHVYLGGDAVARDRDILKQNGITHVLNCVGFVCPEYFKDDFVYRTLWLQDSPSEDITSILYDVFDYFEDVREQSGRVFVHCCQGVSRSTSLVIAYLMWREGQSFDDAFQYVKAARGIADPNMGFACQLLQCQKRVHAFPLSPSSLLRMYRVAPHSPYDPLHLVPKMLNDPSPSALDSRGAFIIHIPSAIFVWIGKNCRAIMERDARGAVVQIVRYERVQGPIYVIKEGEEPINFWDSFANLLPLMDKSNSKIIPGELKGKPYPGERKVDSYDVDFEIFQKAITGGFVPPFPSSENEHETHLPVRESNWSMLRRKFASGNMKDFVSAPRVSLSRVYSDSSMMVHFSAKSSSPSTFSLSSSSSSPVYLSPDSLSSDSGSSSSSSSKYFSESSLDSPSASSPSVPASSSLSSFSNMSLISSNSSLESVPNGPETRDAVLLESSSHSLLFSSKKFSPSLAERRGSSKSLTLPTMPCKIRATNSASRFLATQEDSKRKNKNSFSLNVLINMKKDSEPTDRVANEQTSSTQNFKNFENGIDVRVGSVASCQQETKVDAQSTSSWKSYPKPFEKGMLSTTVSGKQDGEFVQPMVYCWPELERIAAFDTSYLNSKAALAIFSPSRYLGKKDDMMLFMWVGSSFDHDLSQVRVKRDNDLVDLEKIDWVKVGQYVLTEVGLQENAEIKIVKEGEETEEFLARLNKVVLKAEQVGCSGPGSSAMAPKADSSKKADPKAQALKAAKAVKAGSTFKPKAKKIRTSVTFHRPKTLKKDRNPKYPRISATPRNKLDQYQILKYPLTTESAMKKIEDNNTLVFIVDIRADKKKIKDAVKKMYDIQTKKVNTLIRPDGTKKAYVRLTPDYDALDVANKIGII 1023
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1128648 1134765 - CmaCh04G002320.1 Cma04g00232 291313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00232 1023 Hamap 50S ribosomal protein L23 [rplW]. 943 1023 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cma04g00232 1023 SUPERFAMILY Ribosomal proteins S24e, L23 and L15e 941 1016 IPR012678 GO:0003735|GO:0005840|GO:0006412
Cma04g00232 1023 MobiDBLite consensus disorder prediction 32 69 - -
Cma04g00232 1023 PANTHER PROTEIN-TYROSINE-PHOSPHATASE MKP1 1 848 - -
Cma04g00232 1023 ProSitePatterns Ribosomal protein L23 signature. 1001 1016 IPR001014 -
Cma04g00232 1023 SMART VILL_6 302 399 IPR007122 GO:0051015
Cma04g00232 1023 MobiDBLite consensus disorder prediction 54 69 - -
Cma04g00232 1023 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 148 294 IPR029021 -
Cma04g00232 1023 Pfam Ribosomal protein L23 943 1004 IPR013025 GO:0003735|GO:0005840|GO:0006412
Cma04g00232 1023 Pfam Dual specificity phosphatase, catalytic domain 161 291 IPR000340 GO:0008138|GO:0016311
Cma04g00232 1023 ProSitePatterns Tyrosine specific protein phosphatases active site. 237 247 IPR016130 GO:0016311|GO:0016791
Cma04g00232 1023 Gene3D - 904 1023 IPR012677 -
Cma04g00232 1023 Pfam Ribosomal protein L23, N-terminal domain 884 932 IPR005633 -
Cma04g00232 1023 PANTHER MKPA PROTEIN 1 848 - -
Cma04g00232 1023 ProSiteProfiles Dual specificity protein phosphatase domain profile. 153 295 IPR020422 GO:0006470|GO:0008138
Cma04g00232 1023 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 212 273 IPR000387 GO:0016311|GO:0016791
Cma04g00232 1023 MobiDBLite consensus disorder prediction 102 121 - -
Cma04g00232 1023 SUPERFAMILY Actin depolymerizing proteins 300 401 - -
Cma04g00232 1023 Gene3D Severin 304 399 IPR029006 -
Cma04g00232 1023 SMART dsp_5 153 292 IPR020422 GO:0006470|GO:0008138
Cma04g00232 1023 Gene3D Protein tyrosine phosphatase superfamily 140 295 IPR029021 -
Cma04g00232 1023 CDD DSP 154 288 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g01207 Cma04g00232 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00232 Cma-Chr4:1128648 Cma04g01778 Cma-Chr4:8943123 0 dispersed
Cma11g01941 Cma-Chr11:12763870 Cma04g00232 Cma-Chr4:1128648 5.19E-12 dispersed
Cma19g01054 Cma-Chr19:8886613 Cma04g00232 Cma-Chr4:1128648 1.95E-09 dispersed
Cma04g01207 Cma-Chr4:6155331 Cma04g00232 Cma-Chr4:1128648 0 transposed
Cma10g00020 Cma-Chr10:79961 Cma04g00232 Cma-Chr4:1128648 2.32E-20 transposed
Cma15g00414 Cma-Chr15:1859116 Cma04g00232 Cma-Chr4:1128648 1.44E-73 wgd
Cma04g00232 Cma-Chr4:1128648 Cma04g01206 Cma-Chr4:6150729 1.39E-84 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00232 - - csv:101223210 1391.33