Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00237 ATGGCCCTCGAAGCTGCAGTCAAGGCTGCCGTTGGTGCGCCGGATCTTATTGGGGACTGCCCTTTCAGCCATCGGGTCCTGTTAACTTTGGAGGAGAAGAAACTTTGCTACGAAGTGCATCTCATCAATTTATCCGACAAACCCAGTTGGTTCTTGGAAGTGAGCCCCGGAGGGAAGGTGCCGGTGGTGAAGTTTGATGACAAATGGGTATCTGATTCTGATGTCATTGTGGGTATTCTTGAGGAGAAGTACCCTGAGCCTTCGCTTGTTACTCCTCCTGAACTTTCTTCTGTCAAGGATGCAAATGATGGTTCAGAGCAGGCTCTCCTTGAAGAGTTGAAGGCATTCGACGAGCATCTTAAGGCTCATGGTCCTTATGTTGCTGGAGACAAGGTAACTGCTGTCGACTTGAGTCTTGCACCAAAGTTGTACCATCTTGATGTTGCTCTTAGCCATTTCAAGAATTGGTCTATCCCCAAAGAGTTAGCCAGCTTAATCGCCTACAAAGAGTTGCTTTTCGCTCGAGAATCGTTCGTGAAGACGAAGGCTGAGCCGAAATATGTGATTGCAGGATGGGAGCCTAAGTTCCCCAGTTGCCCCATCGATCAGAAAATGGCCATTGAAGTTGCTGTCAAGGCTGCCATTGGTGCACCCAATGTCATTGGAGACTGTCCTTTCTCTCAGAGGGTTCTCTTAACTTTAGAGGAGAAGAAAGTTCCATACAAACTGCATCTCATCAATTTATCCGATAAACCCATTTGGTTTTTGGAAGTGAGCCCAGAAGGGAAGGTGCCTGTGGTGAAGTTTGATGACAAATGGGTTCCTGATTCTGATGTCATTGTGGGGATTCTTGAGGAGAAGTACCCTGAGCCTTCTCTTGTTACTCCACCTGAATTTTCTTCTGTGGGATCAAAGATAAATGGTGCTTTCGTGAAAATGTTGAAGAGCAAGGACCCAAATGATGGTTCGGAGCTGGCTTTGCTTGAAGAGTTGAAGGCGTTGGATGAGCATCTTAAGGCTCATGGTCCTTATGTTGCTGGAGAGAAGGTCACTGCTGTTGATTTGAGTCTGGCACCAAAGTTGTACAATCTCGATATTGCTCTTGGCCATTTCAAGAAGTGGATATTCCCTGTAAACTTAAACAGTTTATCCAAATACAAAGAGTTGCTTTTCGCTCGAGAATCTTTCATGAAAACAAAGGCTGCCCCAGAACATGTAATTTCTGGTTGGGAGCCCAAGGTGAATGCTGCTGCAGTACCTGTAATTTCTGATAGTGAGCCCAAGGTGAATGCTGCCACCGAACCTGTAGTTTCGGATAGTGAGCCCAAGGCTAATTCTGTCGCAGAACATGTAGTTTCTGATTGTGAGCCCAAGGCCATTGAGGTTGCTGTCAAGGCTGCTGTTGGTGCACTCGATGTTATTGGAGACTGCCCTTTTGCTCAGAGGGTTCTTTTGACTTTGGAGGAGAAGAAAGTTCCTTACAAATGGCATCTCATCGATTTATCCGACAAACCCTGTTGGTTCCTGGAAGTGAGCCCAGAAGGGAAGGTGCCGGTGGCCAAGATTGACGACAGATGGGTTCCCGACTCAGATGTCATTGTTGGAATTCTTGAGGAGAAGTATCCCGAGCCTTTTCTTGCGACTCCACCTGAATTTTCTTCCGTGGGATCAAAGATAAATGGTGCTTTTGTAAAATTCTTGAAGAGCAAGGACCCGAGCGATGGTTCGGAGCAGGCTTTGCTTGAAGAATTGAAGGCGTTGAACGAGCATCTCAAGGCTCATGGTCCTTATGTTGCTGGAGAAAAGGTTACCGCTGTTGATTTGAGTCTGGCACCGAAGCTATACCATCTTGATGTCGCACTTGGCCATTTCAAGAAGTGGATTTTCCCTGAAAACTTAACCAGTCTATCCAAATACAAAGAGTTGCTTTTCGCTCGAGAATCTTTCGTGAAGACGAAGGCTGCCCCGGAACATGTAATTTCTGGTTGGGAGGCCAAAGTGAATGATGCATGA 2013 46.5 MALEAAVKAAVGAPDLIGDCPFSHRVLLTLEEKKLCYEVHLINLSDKPSWFLEVSPGGKVPVVKFDDKWVSDSDVIVGILEEKYPEPSLVTPPELSSVKDANDGSEQALLEELKAFDEHLKAHGPYVAGDKVTAVDLSLAPKLYHLDVALSHFKNWSIPKELASLIAYKELLFARESFVKTKAEPKYVIAGWEPKFPSCPIDQKMAIEVAVKAAIGAPNVIGDCPFSQRVLLTLEEKKVPYKLHLINLSDKPIWFLEVSPEGKVPVVKFDDKWVPDSDVIVGILEEKYPEPSLVTPPEFSSVGSKINGAFVKMLKSKDPNDGSELALLEELKALDEHLKAHGPYVAGEKVTAVDLSLAPKLYNLDIALGHFKKWIFPVNLNSLSKYKELLFARESFMKTKAAPEHVISGWEPKVNAAAVPVISDSEPKVNAATEPVVSDSEPKANSVAEHVVSDCEPKAIEVAVKAAVGALDVIGDCPFAQRVLLTLEEKKVPYKWHLIDLSDKPCWFLEVSPEGKVPVAKIDDRWVPDSDVIVGILEEKYPEPFLATPPEFSSVGSKINGAFVKFLKSKDPSDGSEQALLEELKALNEHLKAHGPYVAGEKVTAVDLSLAPKLYHLDVALGHFKKWIFPENLTSLSKYKELLFARESFVKTKAAPEHVISGWEAKVNDA 670
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1157423 1164704 - CmaCh04G002370.1 Cma04g00237 291318
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00237 670 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 460 668 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cma04g00237 670 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 214 292 IPR004045 -
Cma04g00237 670 SUPERFAMILY GST C-terminal domain-like 95 196 IPR036282 -
Cma04g00237 670 SFLD Main (cytGST) 223 367 - -
Cma04g00237 670 SFLD Main (cytGST) 476 638 - -
Cma04g00237 670 SUPERFAMILY Thioredoxin-like 474 544 IPR036249 -
Cma04g00237 670 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 205 415 - -
Cma04g00237 670 Gene3D Glutaredoxin 458 546 - -
Cma04g00237 670 CDD GST_N_family 20 77 - -
Cma04g00237 670 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 205 415 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cma04g00237 670 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 523 670 IPR010987 -
Cma04g00237 670 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 460 668 - -
Cma04g00237 670 SUPERFAMILY Thioredoxin-like 223 291 IPR036249 -
Cma04g00237 670 SUPERFAMILY GST C-terminal domain-like 303 414 IPR036282 -
Cma04g00237 670 Pfam Glutathione S-transferase, N-terminal domain 19 87 IPR004045 -
Cma04g00237 670 Pfam Glutathione S-transferase, N-terminal domain 223 291 IPR004045 -
Cma04g00237 670 Pfam Glutathione S-transferase, N-terminal domain 476 544 IPR004045 -
Cma04g00237 670 Gene3D Glutaredoxin 203 292 - -
Cma04g00237 670 SFLD Glutathione Transferase (cytosolic) 223 367 IPR040079 -
Cma04g00237 670 SFLD Glutathione Transferase (cytosolic) 476 638 IPR040079 -
Cma04g00237 670 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 270 421 IPR010987 -
Cma04g00237 670 Pfam Glutathione S-transferase, C-terminal domain 327 371 - -
Cma04g00237 670 Pfam Glutathione S-transferase, C-terminal domain 576 628 - -
Cma04g00237 670 Pfam Glutathione S-transferase, C-terminal domain 101 161 - -
Cma04g00237 670 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 196 IPR044627 GO:0033355|GO:0045174|GO:0098869
Cma04g00237 670 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 467 545 IPR004045 -
Cma04g00237 670 Gene3D Glutaredoxin 1 89 - -
Cma04g00237 670 SUPERFAMILY Thioredoxin-like 19 87 IPR036249 -
Cma04g00237 670 PANTHER GLUTATHIONE S-TRANSFERASE DHAR2-RELATED 1 196 - -
Cma04g00237 670 CDD GST_N_family 477 534 - -
Cma04g00237 670 Gene3D - 94 197 - -
Cma04g00237 670 Gene3D - 547 669 - -
Cma04g00237 670 Gene3D - 294 416 - -
Cma04g00237 670 CDD GST_N_family 224 281 - -
Cma04g00237 670 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 10 88 IPR004045 -
Cma04g00237 670 SUPERFAMILY GST C-terminal domain-like 558 666 IPR036282 -
Cma04g00237 670 ProSiteProfiles Soluble glutathione S-transferase C-terminal domain profile. 66 198 IPR010987 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00237 Cma-Chr4:1157423 Cma04g01211 Cma-Chr4:6178882 1.61E-97 dispersed
Cma04g00236 Cma-Chr4:1154973 Cma04g00237 Cma-Chr4:1157423 5.77E-92 tandem
Cma14g00821 Cma-Chr14:4147107 Cma04g00237 Cma-Chr4:1157423 1.84E-70 transposed
Cma04g00237 Cma-Chr4:1157423 Cma06g00341 Cma-Chr6:1583631 1.94E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00237 K21888 - cmax:111483829 922.154