Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00249 ATGGGAGCTTCAAACGTCCATTTTCTCATCTGGATTCTTTGTGCTCTGTGTTTAAGATCATCTCTCTCATCAGGATTCTCTCCTGATGATAATTTTCTGATCGATTGTGGATCAACCTCCAATGTAACAGTGGGAGGTCGTCTATTTCAACCTGATGGATTTTTCTCTGACAATCTTTCAAACCCGAATGGGAAATTTGTTTCCACTGCTAGCAAAGTTTCTAGTTCATCTCCACTGTTCTTATTCTCTCATCTCTTTCAAACTGCAAAAGTATTTGAAACAACTTCCGAATACAATTTCAAAATCAAGAAACAGGGCAGGCACTGGATCCGCCTCTACTTTTACCCTTTTGTTTATGAGAACTTCAATTTGAGTTTAGCCAAATTCTCAGTTTCTGCTCAAAATATCACCCTTCTCAAAGAGTTTCAGATCGAGAGTGGCTCGATAATCAAGGAGTATTCTCTGAATGTCATTTCTAGTAATCTTGTTCTTACATTCACTCCCATGGTGAATTCATTTGCCTTCATCAATGCCTTGGAAGTTGTTTCTGTTCCTAATGAATTGATTCCTTTGGTTGTCCCTACTGTTGAGAAGATAGTAGAAAGTTTGGGGAATAGGGCATTGGAGACAGTTGCTAGAGTGAATATGGGCAACGAAACCGTGCCTCCGAGTAACGATACTCTCTCGCGCCTTTGGGTAGCAGATGGTCCATTCTTGATGCATAACAATCAGGCTGTTGCTGGGAGGTTTGTGTCGAATCTCACGAGAGTGAACATGACAACAGACTCTGAGATTATGGCTCCTCGTTCTGTGTATGGAACAGCAACTCAGTTAGGGGCTGAACCGGATGCGAATGCTAATATTAACGTATCGTGGTCCTTCGATGTCGATCCAGGCTATGAATATCTGATTCGTTTTCACTTCTGTGATATTTTAGATCTTTCTTTTGGATCGCTGTTCTTTAATGTTTTTGTGAACTCGTGGATGGTTAAAGATCATCTTGATCTTAATAATGTTACTTCAGGCATCATGGGTGCACCTTATGTCCTGGACACCATAGCCAGTTCAATTGACAGCTCTAAATTCAAAATAAGTGTTGGCCCTTCCAGTTTTCATGAGTACTCAGCTGCAATCCTTAACGGACTCGAGATCATGAAAATAAGCGATTCTCGGGGGAGTCTTGACGAACCCCCCTTTGATTTACACTCGAAGAATAGTTCCAATGTGAAAGTAGGTCTCATAGCAGGCTTGGTTGCTGGACTGGTTGCTGCTGTTTTGGTCACTCTTGTCGTCGTGCTGTGTCGACGAAGAAGGAAAGCGGGGCTCGTCGGTTATTTGAAGGAAGAGGAAAATTTTGGTGTGAATGGAAGAGAAGGCAACTATGTCATTGGTTCTGTTGGTTATAAATATCCTCTTGCAGCTATATTGGAAGCTACTGATCATTTTAGTGAAAGTTTAGTCATTGGCCATGGCGGGTTTGGGAAGGTTTTCAAGGGAATGCTGAGGGACAACACGGAAGTGGCAGTGAAACGAGGGGCCTCAAAGTCTCAGCAGGGTCTTGCCGAGTTCCGAACCGAAATCGAGATGCTATCCCAGTTTCGCCACCGGCATTTGGTATCTCTGATCGGGTACTGCGACGAGCAAAATGAGATGATTATTATTTACGAATACATGGAAAAAGGGAGTCTCAAGGACCATTTGTATAGCTCAGAACTTCCAAGTTTAAGCTGGAAACAAAGGCTTGAGATATGCATTGGCTCAGCCAGAGGGCTTCACTATCTCCACACTGGTTCCACAAAGGCAATCATACATAGAGATGTCAAAACTGCAAACATTCTCCTAGATCAAAACTACATGGCTAAAGTTGCAGACTTCGGGCTCTCGAAAACTGGCCCCGAGTTCGATAAAACTCATGTTAGTACAGCAGTAAAAGGGAGCTTCGGCTATCTTGATCCCGAGTACTTAACAACACAGCAGCTGACTGAGAAATCCGATGTGTACTCGTTCGGCGTTGTTATGTTCGAAGTCCTTTGTGGTAGGCCTGTCATTGATCCATCTCTTCCAAGGGAAAAGGTGAATTTGATTGAGTGGGTAATGAAGAGGAAGGATAGAGATGAACTGGAGGAGATTGTAGACGCTTGTATTGTCAAGCAAATCAAGCTGGATTCTCTGAAAAAGTACGTAGAAACAGCTGAGAAATGCTTGGCGGAGTGCGGCATGGATCGCCCAACAATGGGAAACGTTCTGTGGAATCTGGAGTGTGCACTTCAGCTCCAAGGAGATGAAAGATCTAGCCATGGCAAGGAATCATCCTCACAAGCTGACCTTTCGAACCACTGGGAGGTGAGCGTATTGACCACTCAATTCAGCACGGGGAGTGCGGTCGATATCGCCGGTATCTCGATGAGTAAGGTGTTTGCTCAAATGGTGAGGGAAGATATGAGATAG 2448 43.75 MGASNVHFLIWILCALCLRSSLSSGFSPDDNFLIDCGSTSNVTVGGRLFQPDGFFSDNLSNPNGKFVSTASKVSSSSPLFLFSHLFQTAKVFETTSEYNFKIKKQGRHWIRLYFYPFVYENFNLSLAKFSVSAQNITLLKEFQIESGSIIKEYSLNVISSNLVLTFTPMVNSFAFINALEVVSVPNELIPLVVPTVEKIVESLGNRALETVARVNMGNETVPPSNDTLSRLWVADGPFLMHNNQAVAGRFVSNLTRVNMTTDSEIMAPRSVYGTATQLGAEPDANANINVSWSFDVDPGYEYLIRFHFCDILDLSFGSLFFNVFVNSWMVKDHLDLNNVTSGIMGAPYVLDTIASSIDSSKFKISVGPSSFHEYSAAILNGLEIMKISDSRGSLDEPPFDLHSKNSSNVKVGLIAGLVAGLVAAVLVTLVVVLCRRRRKAGLVGYLKEEENFGVNGREGNYVIGSVGYKYPLAAILEATDHFSESLVIGHGGFGKVFKGMLRDNTEVAVKRGASKSQQGLAEFRTEIEMLSQFRHRHLVSLIGYCDEQNEMIIIYEYMEKGSLKDHLYSSELPSLSWKQRLEICIGSARGLHYLHTGSTKAIIHRDVKTANILLDQNYMAKVADFGLSKTGPEFDKTHVSTAVKGSFGYLDPEYLTTQQLTEKSDVYSFGVVMFEVLCGRPVIDPSLPREKVNLIEWVMKRKDRDELEEIVDACIVKQIKLDSLKKYVETAEKCLAECGMDRPTMGNVLWNLECALQLQGDERSSHGKESSSQADLSNHWEVSVLTTQFSTGSAVDIAGISMSKVFAQMVREDMR 815
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1216602 1219049 + CmaCh04G002490.1 Cma04g00249 291330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00249 815 ProSitePatterns Serine/Threonine protein kinases active-site signature. 602 614 IPR008271 GO:0004672|GO:0006468
Cma04g00249 815 Pfam Protein tyrosine and serine/threonine kinase 487 698 IPR001245 GO:0004672|GO:0006468
Cma04g00249 815 Pfam Malectin-like domain 34 387 IPR024788 -
Cma04g00249 815 SMART serkin_6 482 728 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00249 815 PANTHER RECEPTOR-LIKE PROTEIN KINASE HERK 1 17 807 - -
Cma04g00249 815 Gene3D Phosphorylase Kinase; domain 1 455 557 - -
Cma04g00249 815 CDD STKc_IRAK 488 753 - -
Cma04g00249 815 Gene3D Transferase(Phosphotransferase) domain 1 558 779 - -
Cma04g00249 815 PANTHER OS07G0166700 PROTEIN 17 807 IPR045272 GO:0004714|GO:0006468
Cma04g00249 815 Gene3D - 206 388 - -
Cma04g00249 815 Gene3D - 31 185 - -
Cma04g00249 815 ProSitePatterns Protein kinases ATP-binding region signature. 488 510 IPR017441 GO:0005524
Cma04g00249 815 ProSiteProfiles Protein kinase domain profile. 482 756 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00249 815 SUPERFAMILY Protein kinase-like (PK-like) 466 752 IPR011009 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00249 Cma04g01222 ECH
Cma04g01222 Cma04g00249 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00249 Cma-Chr4:1216602 Cma09g00890 Cma-Chr9:4385407 0 dispersed
Cma02g00844 Cma-Chr2:4933801 Cma04g00249 Cma-Chr4:1216602 0 wgd
Cma20g00441 Cma-Chr20:2089714 Cma04g00249 Cma-Chr4:1216602 0 wgd
Cma04g00249 Cma-Chr4:1216602 Cma04g01222 Cma-Chr4:6235585 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68458 PF12819 Malectin_like 1.00E-32 CL0202 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00249 - - csv:101203398 1288.48