Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00253 ATGAAGAAGTTCTTTCTTAGATCGTTTGGCAATGGGTATGGCAAAAATGATTCAGTTCATCCATCATCAACAGATGACAGCGAAGCTTATTGGGAGCATCCATTAGGGAGTAGGATGGGTACTTCTATTGGTGATAAGGCTGGAAGTAGTCCCCAGAGTTCCAAGGATTTGCCTTCCAAGTTCGATAGGCAAATAGATGATAATGAACGGTCCCGCAGCCGTCCTAAACTTAGAAGGACCCAATCGTTATCTTCAGCTGCATTTAGAGACCAAGGTCGAATAAACTTCGATGGTTTGATTGATCCAAGTAGATCTCCTGGTAATGCTAGCAGTCGCTCAAAACGGCAACATGAACAGTCATCTCGTTGCCAAAGTCCATCTCGAGAGATGCAATTCAAGGTAAAGCAGACTGAATTGCCAAATGACTATACCTCTGGATCTGTTAGGCCATGCTCCAGAACTTGCTATGATTCTTCTGGAAATTGTACCACTAGTTCCAGTATTGTTTCAAATATGGTCTTGGACCGCTACATTGATGGAGAACAACATCAGGAAATAAATGGATCCAAGAATAAGTATTATCAAAGAAATAATGGGTGGCGGCCTCCTCGAGCTCAGTGTTTGCCACCCTCTTCAACAACGGCTAGCATTAAAGATAATCCAAGATCCTATTCGTCCAGAGAAACTAGAAGTTCTCTTTCTCGTTTCTTATCTGAAGATGGAGAATATGGATTCGGGAATGAATCACCTCGAAGTGCAAAGACTGTTGTTGACAGACTCTCTCAACAACGTGTTGTGCCTAGAGGGTCCTATAAAGAGCTCGGTGAAAATATACCTATCACAGTTGCAGATACTTACAGTCGATCGTTGAATGGATGCTTTGATCCTAATGCAGATTTGACAAAACCATGCTTCCCTACAGATGAGCCTGGCGAAACTGATGGAGAACTACAAAAAAAGGCCAAGGAAGCAGAGGAGAGGATCATGTTTCTGTCTGAAGAACTTGAACAGGAACGCTTAGTTCAATATAGCAAATTTGATGTATCAGATCTTATCCAGATAATTAAAAATCTCACTGGGGAGAGGTTCACATTGGCACTTGAAGTTTCAAGCCTTCTGCAGTCTCGAATTGCAGATAGGACATGTGCCAGAGAAGAGCTTAGACAAGCAAATGAAGAATTGGAGTCCAGAACACAGAAACTGGAGAAGGAGAAAACTGAGTTGCAGGTAGGATTGGAGAAGGAGCTAGACAGAAGGTCAAGTGACTGGTCATTCAAGCTTGAGAAGTACAAGTTAGAGGAGGAGGGGCAAAGGGGTCGAGTTAGAGAGCTGGCTGAACAAAATGTCTCACTACAAAGAGAGGTTGCTTCTTTAAACAAGAGGGAAACAGAGAACAAAAGCATGACAACTAATCTGGAGACAAATATCCTCGACCTAACAGCTAGAATTGATGAAAAGAATGAACAAAATAAATATTTACAGCTAAACCTGTCTAAATTAGAAGAAGATTACCGGGGATCAATAGAAGGCATAGATTGCATCAGAAAGAATTTTGAGGAAAAAGAGAAGGAGTGCAGGGAGTTGCATAAATCAATCACGAGGTTAACAAGGACCTGCAATGAACAAGAGAAGACTATTAATGGTTTAAGGGAAAGATTGAGTGAGCAATTTGGTAACATTCAACCAATGGAGAAACTGGATAAGGAATTTGAAAAATTGAAGATGGAACAAATGAGATTAACAGGAGTGGAACTGGCTTTGAGAAAGGCGTTAGAATCTTGTAGGGTTGAAGTTGATTCTCTTCGACGTGAGAATATAAATATATTGACTCACTTAAAAGACAATGGGAATGAGAGAGGTGCTACAACCTTCAAGTTGGTTAATGAAATGTCAACTCGTGTTTACCATCTACAAAATCAAGGTATGGTATTATTAAACGAGAGTACTCAATTTTGTTCCCAATTACTTGAGTTCATCAAAGAGAAAGCTGCTCAGCTTCATCCAAATAAGCATAGAACGGAGCATATTGAGAATGGTTTAGATGCACATTTTTTTCTTGAATCTGAAGCGAAAATTCAGGGCTTCAAGTATGGGATTGAGAGCCTGACAATGAGTTTACAGAAAATATCTATGTTGTTGCAAGCGGAGTCTAACTCCAATTCTCAGAGCTCAGGTGTAGACAATGCACTACAACTAAATAGTCAATATTCAGAGGACGGTTTGAGATCTGAGCTTAAAGCAGAAACTTTATTCTCAAGCCTATTAAGAGAGAAACTATTCTCTAAGGAGCTGGAAGTGGAGCAGTTACAAGCAGAACTGGCGACAGCAGTAAGAGGGAATGACGTGTTAAAATGTGAGGTCCAGAACGGAATGGAAGGCCTTTCCTGCCTCTCACATAAGATAAAAGATCTTGAACTTCAGTTGCTGAAGAGAAACGAGGACATAAACAAGTTACAAAATGAGCTGGAGGAGTCTACAAGGGAATTAGAAATTCTAAGGGACGTACTTCAGAAAATTTCGAAGGAGAGAGACATGTTGTGGGAGGAAGTAAACAAACACAGGGAGAAAAACATGCTACTGATCTCCAAAGTTGATGAGTTGAAGTCAAAGATTGAGACATTGGAAGAGGACATTTTGCTGAAGGAAGGTCAGATAACAATCTTAAAAGACACACTCACCAATAAATCCATTGACCTTCTTGCTTCTCCCAAATCTTCATGGGAATCTCGAGTGCAGTAA 2739 40.53 MKKFFLRSFGNGYGKNDSVHPSSTDDSEAYWEHPLGSRMGTSIGDKAGSSPQSSKDLPSKFDRQIDDNERSRSRPKLRRTQSLSSAAFRDQGRINFDGLIDPSRSPGNASSRSKRQHEQSSRCQSPSREMQFKVKQTELPNDYTSGSVRPCSRTCYDSSGNCTTSSSIVSNMVLDRYIDGEQHQEINGSKNKYYQRNNGWRPPRAQCLPPSSTTASIKDNPRSYSSRETRSSLSRFLSEDGEYGFGNESPRSAKTVVDRLSQQRVVPRGSYKELGENIPITVADTYSRSLNGCFDPNADLTKPCFPTDEPGETDGELQKKAKEAEERIMFLSEELEQERLVQYSKFDVSDLIQIIKNLTGERFTLALEVSSLLQSRIADRTCAREELRQANEELESRTQKLEKEKTELQVGLEKELDRRSSDWSFKLEKYKLEEEGQRGRVRELAEQNVSLQREVASLNKRETENKSMTTNLETNILDLTARIDEKNEQNKYLQLNLSKLEEDYRGSIEGIDCIRKNFEEKEKECRELHKSITRLTRTCNEQEKTINGLRERLSEQFGNIQPMEKLDKEFEKLKMEQMRLTGVELALRKALESCRVEVDSLRRENINILTHLKDNGNERGATTFKLVNEMSTRVYHLQNQGMVLLNESTQFCSQLLEFIKEKAAQLHPNKHRTEHIENGLDAHFFLESEAKIQGFKYGIESLTMSLQKISMLLQAESNSNSQSSGVDNALQLNSQYSEDGLRSELKAETLFSSLLREKLFSKELEVEQLQAELATAVRGNDVLKCEVQNGMEGLSCLSHKIKDLELQLLKRNEDINKLQNELEESTRELEILRDVLQKISKERDMLWEEVNKHREKNMLLISKVDELKSKIETLEEDILLKEGQITILKDTLTNKSIDLLASPKSSWESRVQ 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1233583 1237710 + CmaCh04G002530.1 Cma04g00253 291334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00253 912 Coils Coil 314 341 - -
Cma04g00253 912 PANTHER CAP-GLY DOMAIN LINKER 70 904 - -
Cma04g00253 912 Coils Coil 377 411 - -
Cma04g00253 912 MobiDBLite consensus disorder prediction 1 129 - -
Cma04g00253 912 Coils Coil 511 552 - -
Cma04g00253 912 Coils Coil 850 884 - -
Cma04g00253 912 Coils Coil 801 842 - -
Cma04g00253 912 Coils Coil 427 461 - -
Cma04g00253 912 PANTHER CAP-GLY DOMAIN LINKER 70 904 - -
Cma04g00253 912 Coils Coil 469 503 - -
Cma04g00253 912 MobiDBLite consensus disorder prediction 43 58 - -
Cma04g00253 912 Coils Coil 766 786 - -
Cma04g00253 912 MobiDBLite consensus disorder prediction 59 76 - -
Cma04g00253 912 MobiDBLite consensus disorder prediction 207 232 - -
Cma04g00253 912 MobiDBLite consensus disorder prediction 197 233 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00253 Cma15g00426 CCT
Cma04g00253 Cma04g02608 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma15g00426 Cma-Chr15:1897938 Cma04g00253 Cma-Chr4:1233583 0 wgd
Cma04g00253 Cma-Chr4:1233583 Cma04g02608 Cma-Chr4:17821985 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00253 - - csv:101203647 1352.42