Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00254 ATGCTGGTGTCGAATCAGGAATCAGTGCGCTTCTGGAAGAATAGAGGGCTCATTTTACCAGCGAAGAGAAGGGACGTGATTCAGTCTATAATTTGGACAGTTTTGCAGAAAAGTGTCTGCAAACTCTCTCGGCTATCTCAAGGGATGGTATCTGAAACTTTGATGAAGATTGTATCACCCTGCTGGAAACCTTCAGTTGAAGGCGGAAATTCTAGTAGAGGTGGGGATGCAAGTGGTCGGGTTGACGGGCTGTTGTGGTACAAGGATTCTGGCCGCCATATTAATGGAGAATTCTCAATGGCAGTTATTCAGGCAAATAAATTGTTGGAAGACCGCAGCCAGCTTGAGTCAGGGCCACTGAGCTCATTTGAATCGGGTCCTGTCGGAACGTTTGTTGGAATCTATGATGGCCATGGAGGTCCTGAAGCTGCAGAATTCATAAATGATCGTCTGTTCAATAATATGAAGACTTTTCATGGTGCAGAATTTATTCCAGATAATCAGGGAGTATCGGCTGAAATTATTAACAAAGCGTTCGTGGAGACAGAGGAAGAGTTCTTGTCTCTTGTAAAGAATCAATGGCTTATTAAGCCGCAAATTGCTTCGGTCGGTTCATGCTGTTTGGTAGGCATAATATGTTGTGGATTACTGTATATTGCAAATGCTGGAGATTCTAGAGTGGTGTTGGGAAGAACTGAAAAAACTCATAAAGAGGTTAAAGCTGTCCAATTGTCATCTGAGCACAATGCAAGTATTGAATCTGTGAGAGAGGAGTTGCACTTGTTGCACCCCAATGATCCGCACATTGTGGTCTTAAAGCACAAGGTGTGGCGTGTGAAGGGTGTTATACAGGTCTCAAGATCCCTTGGTGATGCTTATCTGAAGAAAACCGAGTTCAACCGAGAGCCTCTTTTGCCGAAGTTCAGATTACCAGAACCCTTTCACAAGCCAATACTTCAAGCCGAGCCTGCTATCGTAGTGCAGAAACTGTACCCAGAGGATCAGTTTCTTATATTTGCTTCAGATGGTCTTTGGGAGTATATAAGCAATCAGGAAGCTGTCGACCTCGTCCATAGTTGTCCACGTAACGGGATTGCAAGGAAGCTCGTTAAAGCTGCTCTTCATGAAGCTGCAAGAAAAAGAGAAATGAGGTACACAGACCTGAAGAAGATCGACCGCGGGGTAAGACGACATTTTCATGACGACATAACTGTTATAGTTTTGTTCCTGGATTCGCATCTGATTAGTCGCAGTCCGAGCCATGGACCTATGCTTTCAATCAGAGGGGGTTCTGCACTGGTAGCAGCTCTTGAACATAATAATGAAGTCAAAGGAGAGAGTCCTGAATTGATTAAATATACTGGCAGCAACTTTGAAGGGCCTTCATTGTTTCGCGATCTTGCAGGGCCCTTTGTGAAAGCCGCAGCTGCAGCCTCCCCAATGGCCATGGTTACTGCAGACTGTACTGTGCAGCACATGCGTAGTTGCTTCTTGTAA 1497 44.89 MLVSNQESVRFWKNRGLILPAKRRDVIQSIIWTVLQKSVCKLSRLSQGMVSETLMKIVSPCWKPSVEGGNSSRGGDASGRVDGLLWYKDSGRHINGEFSMAVIQANKLLEDRSQLESGPLSSFESGPVGTFVGIYDGHGGPEAAEFINDRLFNNMKTFHGAEFIPDNQGVSAEIINKAFVETEEEFLSLVKNQWLIKPQIASVGSCCLVGIICCGLLYIANAGDSRVVLGRTEKTHKEVKAVQLSSEHNASIESVREELHLLHPNDPHIVVLKHKVWRVKGVIQVSRSLGDAYLKKTEFNREPLLPKFRLPEPFHKPILQAEPAIVVQKLYPEDQFLIFASDGLWEYISNQEAVDLVHSCPRNGIARKLVKAALHEAARKREMRYTDLKKIDRGVRRHFHDDITVIVLFLDSHLISRSPSHGPMLSIRGGSALVAALEHNNEVKGESPELIKYTGSNFEGPSLFRDLAGPFVKAAAAASPMAMVTADCTVQHMRSCFL 498
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1239018 1245406 + CmaCh04G002540.1 Cma04g00254 291335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00254 498 ProSiteProfiles PPM-type phosphatase domain profile. 97 410 IPR001932 -
Cma04g00254 498 CDD PP2Cc 98 410 IPR001932 -
Cma04g00254 498 Gene3D - 87 419 IPR036457 -
Cma04g00254 498 SUPERFAMILY PP2C-like 106 411 IPR036457 -
Cma04g00254 498 PANTHER ALPHABET, ISOFORM E-RELATED 56 432 - -
Cma04g00254 498 SMART PP2C_4 89 408 IPR001932 -
Cma04g00254 498 PANTHER PROTEIN PHOSPHATASE 2C 38-RELATED 56 432 - -
Cma04g00254 498 Pfam Protein phosphatase 2C 129 379 IPR001932 -
Cma04g00254 498 ProSitePatterns PPM-type phosphatase domain signature. 131 139 IPR000222 GO:0043169
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00254 Cma-Chr4:1239018 Cma06g00339 Cma-Chr6:1578877 0 dispersed
Cma20g00740 Cma-Chr20:3468634 Cma04g00254 Cma-Chr4:1239018 3.12E-171 dispersed
Cma14g00181 Cma-Chr14:756985 Cma04g00254 Cma-Chr4:1239018 0 wgd
Cma04g00254 Cma-Chr4:1239018 Cma04g01230 Cma-Chr4:6275107 1.07E-07 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00254 K01102 - csv:101220760 727.243