Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00257 ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAATAAGAAGGAAAAGAAGCAGCAGGTTCACAAGGAAGACGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGGGGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCTGCTGCAACAAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGACTGGAGAGCATACATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAGTTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAGAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTACATGATCTTCCACCTGATAAAAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTCGGTGAAGATTACCATCCCAAGTTATCCGATTTTGGCTTAGCAAAATTGGGCCCTGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAGTATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTCGTTCTGCTTGAAATTATTACCGGCAGAAAAGCGATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTAGCATGGGCACACCCCTTATTTAAAGACAGAAGGAAATTTTGGCAGATGGCTGATCCATTGCTCCAAGGACAGTACCCAGTCAGAGGCTTGTACCAAGCTCTTGCAGTAGCTGCAATGTGTGCTCAGGAACAGCCTCATATGCGACCCCTTATTGCGGATGTCGTCACAGCCCTGACATACCTTGCCTCCCAAAAATTCGATCCCGAATCCCAGACAGTTCAAAACACTCACAGTAGCTCGTCCACGCCTAGATCTTCTAGAAGAGAACTGTGA 1140 43.68 MGWFLCSGSSNKKEKKQQVHKEDDPIPSTSEKLMVKGSFNGKNEALKDGSSDQISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESIHQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFWQMADPLLQGQYPVRGLYQALAVAAMCAQEQPHMRPLIADVVTALTYLASQKFDPESQTVQNTHSSSSTPRSSRREL 379
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1266414 1271847 + CmaCh04G002570.1 Cma04g00257 291338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00257 379 PANTHER OS07G0668900 PROTEIN 11 376 - -
Cma04g00257 379 CDD STKc_IRAK 79 348 - -
Cma04g00257 379 ProSitePatterns Serine/Threonine protein kinases active-site signature. 196 208 IPR008271 GO:0004672|GO:0006468
Cma04g00257 379 SMART serkin_6 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00257 379 MobiDBLite consensus disorder prediction 1 32 - -
Cma04g00257 379 SUPERFAMILY Protein kinase-like (PK-like) 51 347 IPR011009 -
Cma04g00257 379 Pfam Protein tyrosine and serine/threonine kinase 78 291 IPR001245 GO:0004672|GO:0006468
Cma04g00257 379 ProSiteProfiles Protein kinase domain profile. 73 350 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00257 379 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Cma04g00257 379 Gene3D Phosphorylase Kinase; domain 1 35 149 - -
Cma04g00257 379 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL27 11 376 - -
Cma04g00257 379 MobiDBLite consensus disorder prediction 358 379 - -
Cma04g00257 379 MobiDBLite consensus disorder prediction 358 372 - -
Cma04g00257 379 Gene3D Transferase(Phosphotransferase) domain 1 150 373 - -
Cma04g00257 379 MobiDBLite consensus disorder prediction 13 29 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00257 Cma04g01234 ECH
Cma04g01234 Cma04g00257 CST
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00257 Cma-Chr4:1266414 Cma06g01475 Cma-Chr6:9381522 0 dispersed
Cma13g00169 Cma-Chr13:1291866 Cma04g00257 Cma-Chr4:1266414 0 wgd
Cma14g00183 Cma-Chr14:761708 Cma04g00257 Cma-Chr4:1266414 0 wgd
Cma20g00451 Cma-Chr20:2135318 Cma04g00257 Cma-Chr4:1266414 3.13E-150 wgd
Cma04g00257 Cma-Chr4:1266414 Cma04g01234 Cma-Chr4:6306340 0 wgd
Cma04g00257 Cma-Chr4:1266414 Cma06g00343 Cma-Chr6:1593759 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68459 PF07714 PK_Tyr_Ser-Thr 3.20E-46 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00257 - - csv:101221705 695.271