Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00257 | ATGGGATGGTTTCTCTGTTCTGGAAGTTCAAATAAGAAGGAAAAGAAGCAGCAGGTTCACAAGGAAGACGATCCGATCCCATCAACTTCAGAAAAATTGATGGTAAAGGGGTCGTTTAATGGGAAGAACGAGGCTCTAAAAGATGGAAGTTCTGATCAGATTTCAGCACAAACAATTACATTCTCATTCCGAGAGTTGGCTGCTGCAACAAAGTATTTTAGAGCAGACTGTCTTTTAGGTGAAGGAGGTTTCGGTCAAGTATATAAAGGACGACTGGAGAGCATACATCAGGTAGTTGCCATCAAGCAACTTGATCGAAATGGGCTACAAGGAAACAGGGAGTTCCTCGTTGAAGTACTAATGTTAAGCCTACTCCATCATCCAAATCTTGTTAATTTAATTGGCTATTGTGCGGATGGTGATCAGAGACTTTTGGTTTATGAATACATGCCATTGGGATCTTTGGAAGACCATCTACATGATCTTCCACCTGATAAAAAACGACTCGACTGGAATACAAGAATGAAAATAGCTGCTGGTGCTGCAAAGGGCTTAGAGTATTTACATGACAAAGCTAACCCCCCAGTTATATATCGTGATCTGAAATGCTCTAACATCCTGCTCGGTGAAGATTACCATCCCAAGTTATCCGATTTTGGCTTAGCAAAATTGGGCCCTGTGGGGGATAACACTCATGTGTCCACAAGAGTGATGGGAACTTATGGATACTGTGCTCCTGAGTATGCAATGACTGGCCAGCTCACTTTAAAATCAGATGTTTATAGCTTTGGAGTCGTTCTGCTTGAAATTATTACCGGCAGAAAAGCGATTGACAATTCAAGAGCCGCAGGGGAACATAATTTGGTAGCATGGGCACACCCCTTATTTAAAGACAGAAGGAAATTTTGGCAGATGGCTGATCCATTGCTCCAAGGACAGTACCCAGTCAGAGGCTTGTACCAAGCTCTTGCAGTAGCTGCAATGTGTGCTCAGGAACAGCCTCATATGCGACCCCTTATTGCGGATGTCGTCACAGCCCTGACATACCTTGCCTCCCAAAAATTCGATCCCGAATCCCAGACAGTTCAAAACACTCACAGTAGCTCGTCCACGCCTAGATCTTCTAGAAGAGAACTGTGA | 1140 | 43.68 | MGWFLCSGSSNKKEKKQQVHKEDDPIPSTSEKLMVKGSFNGKNEALKDGSSDQISAQTITFSFRELAAATKYFRADCLLGEGGFGQVYKGRLESIHQVVAIKQLDRNGLQGNREFLVEVLMLSLLHHPNLVNLIGYCADGDQRLLVYEYMPLGSLEDHLHDLPPDKKRLDWNTRMKIAAGAAKGLEYLHDKANPPVIYRDLKCSNILLGEDYHPKLSDFGLAKLGPVGDNTHVSTRVMGTYGYCAPEYAMTGQLTLKSDVYSFGVVLLEIITGRKAIDNSRAAGEHNLVAWAHPLFKDRRKFWQMADPLLQGQYPVRGLYQALAVAAMCAQEQPHMRPLIADVVTALTYLASQKFDPESQTVQNTHSSSSTPRSSRREL | 379 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1266414 | 1271847 | + | CmaCh04G002570.1 | Cma04g00257 | 291338 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00257 | 379 | PANTHER | OS07G0668900 PROTEIN | 11 | 376 | - | - | |
Cma04g00257 | 379 | CDD | STKc_IRAK | 79 | 348 | - | - | |
Cma04g00257 | 379 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 196 | 208 | IPR008271 | GO:0004672|GO:0006468 | |
Cma04g00257 | 379 | SMART | serkin_6 | 73 | 350 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00257 | 379 | MobiDBLite | consensus disorder prediction | 1 | 32 | - | - | |
Cma04g00257 | 379 | SUPERFAMILY | Protein kinase-like (PK-like) | 51 | 347 | IPR011009 | - | |
Cma04g00257 | 379 | Pfam | Protein tyrosine and serine/threonine kinase | 78 | 291 | IPR001245 | GO:0004672|GO:0006468 | |
Cma04g00257 | 379 | ProSiteProfiles | Protein kinase domain profile. | 73 | 350 | IPR000719 | GO:0004672|GO:0005524|GO:0006468 | |
Cma04g00257 | 379 | ProSitePatterns | Protein kinases ATP-binding region signature. | 79 | 102 | IPR017441 | GO:0005524 | |
Cma04g00257 | 379 | Gene3D | Phosphorylase Kinase; domain 1 | 35 | 149 | - | - | |
Cma04g00257 | 379 | PANTHER | SERINE/THREONINE-PROTEIN KINASE PBL27 | 11 | 376 | - | - | |
Cma04g00257 | 379 | MobiDBLite | consensus disorder prediction | 358 | 379 | - | - | |
Cma04g00257 | 379 | MobiDBLite | consensus disorder prediction | 358 | 372 | - | - | |
Cma04g00257 | 379 | Gene3D | Transferase(Phosphotransferase) domain 1 | 150 | 373 | - | - | |
Cma04g00257 | 379 | MobiDBLite | consensus disorder prediction | 13 | 29 | - | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma04g00257 | Cma04g01234 | ECH | |
Cma04g01234 | Cma04g00257 | CST |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma04g00257 | Cma-Chr4:1266414 | Cma06g01475 | Cma-Chr6:9381522 | 0 | dispersed | |
Cma13g00169 | Cma-Chr13:1291866 | Cma04g00257 | Cma-Chr4:1266414 | 0 | wgd | |
Cma14g00183 | Cma-Chr14:761708 | Cma04g00257 | Cma-Chr4:1266414 | 0 | wgd | |
Cma20g00451 | Cma-Chr20:2135318 | Cma04g00257 | Cma-Chr4:1266414 | 3.13E-150 | wgd | |
Cma04g00257 | Cma-Chr4:1266414 | Cma04g01234 | Cma-Chr4:6306340 | 0 | wgd | |
Cma04g00257 | Cma-Chr4:1266414 | Cma06g00343 | Cma-Chr6:1593759 | 0 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
68459 | PF07714 | PK_Tyr_Ser-Thr | 3.20E-46 | CL0016 | Cma | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00257 | - | - | csv:101221705 | 695.271 |