Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00262 ATGTTGAATCTTAACGATTTGATTATCAACTGCGACGAAACTTCGACGAATCGGACTGTAATGGAAGATTCTGAGACGTCGAATTCTTCTGTCGTGAATGCCGACGAGGTCTGCAACAGTAAAGATGAAGATTCCTCTGTTTTAATCTTCAATATTCTGAAAAGGGAAAATTCCGGCGGTGGTGCGTCGCCGGAATTAGTGACTCAGGCGCTCTTTCCGGTGGCTGGAGGGTGGGGAGAAACTGGGTCTCCGGTTCCGAAGTCCCATTGGTTGAACCTGTCGTCGACTGGTGATTTCGGCCGCGAAGGCGTCGGTGGAGGAACTGCAGAGCTGAAAATTGTGCAGCAGAAACAGCAGCAGGTGAGGAAGAGCCGCCGTGGGCCGCGGTCCCGGAGTTCGCAGTACCGGGGAGTTACCTTTTACCGGCGGACAGGAAGATGGGAATCTCATATTTGGGATTGTGGGAAACAAGTTTATTTAGGTGGGTTCGACACTGCCCATGCTGCAGCAAGGGCATATGATCGAGCAGCAATAAAGTTTAGGGGAGTGAATGCAGATATAAACTTCAACATAAGCGACTACGATGAAGATATGAAACAACTGAAGAATCTAAGCAAAGAAGAATTTGTGCATGTTCTTCGTCGACAAAGCACTGGATTTTCTCGTGGAGGATCGAAGCTGAGAGGATTATCTCTTCAAAAATATGGAAGATGGGAAACTCAAACGAGTCCAATTATGGCGAAGAATGAAATCGAGCAAAGGTCGACAATGGTAGATGCAAACAATGGAGGCAATGGGCATAATCTTGATCTGAGCATTGGAGGAATTTTCAACTACCATTTAAGAAATTCTTCCCAAAACATCAACATTCAAACACCAAAGAAAGAAAACAATGGTGGTGGTGGATATGGTGTGGGTGGACAACAACCTCATATTCCTTCTTCTATGTGGTCTGGTTTTTGCTCTGGTTTTTTAGCAGATAATCAGGAAAGAAGAGAGAAGAGAAGCTACCCGTCAAAGACCCTTACGAGCTCGGGATGGCCAATGGCAATGCCGATATCGATGCCGATGTCGGTTCAAGAAAATGGGAGTAATGGAATAAGAGCAAGAGAAGAAGCTCATGTTTCCAAGAGTGCAGCATCATCAGGATTCTCTTCCTCTTCTAATTTTGGTTCACTTTATCCCCAAAATACCCCTCCCCTCCACAATGCTCTCTGCCTTCCAACACCTTCCCCCAACATTTCTTGA 1248 45.91 MLNLNDLIINCDETSTNRTVMEDSETSNSSVVNADEVCNSKDEDSSVLIFNILKRENSGGGASPELVTQALFPVAGGWGETGSPVPKSHWLNLSSTGDFGREGVGGGTAELKIVQQKQQQVRKSRRGPRSRSSQYRGVTFYRRTGRWESHIWDCGKQVYLGGFDTAHAAARAYDRAAIKFRGVNADINFNISDYDEDMKQLKNLSKEEFVHVLRRQSTGFSRGGSKLRGLSLQKYGRWETQTSPIMAKNEIEQRSTMVDANNGGNGHNLDLSIGGIFNYHLRNSSQNINIQTPKKENNGGGGYGVGGQQPHIPSSMWSGFCSGFLADNQERREKRSYPSKTLTSSGWPMAMPISMPMSVQENGSNGIRAREEAHVSKSAASSGFSSSSNFGSLYPQNTPPLHNALCLPTPSPNIS 415
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1293232 1296164 + CmaCh04G002620.1 Cma04g00262 291343
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00262 415 CDD AP2 134 192 IPR001471 GO:0003700|GO:0006355
Cma04g00262 415 MobiDBLite consensus disorder prediction 371 395 - -
Cma04g00262 415 ProSiteProfiles AP2/ERF domain profile. 134 190 IPR001471 GO:0003700|GO:0006355
Cma04g00262 415 SMART rav1_2 134 196 IPR001471 GO:0003700|GO:0006355
Cma04g00262 415 MobiDBLite consensus disorder prediction 378 395 - -
Cma04g00262 415 Pfam AP2 domain 134 182 IPR001471 GO:0003700|GO:0006355
Cma04g00262 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 396 - -
Cma04g00262 415 SUPERFAMILY DNA-binding domain 133 192 IPR016177 GO:0003677
Cma04g00262 415 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR SMZ-RELATED 1 396 - -
Cma04g00262 415 Gene3D AP2/ERF domain 133 192 IPR036955 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00262 Cma-Chr4:1293232 Cma02g00523 Cma-Chr2:2878935 2.16E-09 dispersed
Cma14g00185 Cma-Chr14:775692 Cma04g00262 Cma-Chr4:1293232 1.47E-09 wgd
Cma02g00857 Cma-Chr2:5007350 Cma04g00262 Cma-Chr4:1293232 1.38E-61 wgd
Cma20g00457 Cma-Chr20:2186182 Cma04g00262 Cma-Chr4:1293232 2.19E-63 wgd
Cma04g00262 Cma-Chr4:1293232 Cma04g01236 Cma-Chr4:6333575 1.93E-174 wgd
Cma04g00262 Cma-Chr4:1293232 Cma06g00347 Cma-Chr6:1612143 8.53E-60 wgd
Cma04g00262 Cma-Chr4:1293232 Cma07g00939 Cma-Chr7:4516453 6.27E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34752 PF00847 AP2 5.60E-10 CL0081 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00262 K09284 - csv:101204131 546.969