Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00263 ATGTGGCGCACCATTGACGCTCATCTGAGGTCCGTACGCCTCCTTCCGAGTCTCTCTGTTCAATCTTCTTCTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCATCCACTTTTCTCTTCAACTCCGGCCGTTCCTTTTTTGCTCGCTCGAGTTCGAGCCTCCTCTCGCCGGTACCGAAGCCTCATTTGATTACTCTCTCCAAGCCTCTAGCCTCTCGTGTAGATGCTAATTGTTTGTCGAGTGTTTTATGTTTTGGCCTTGAAAGTCTACGCCTCGGAGGATCGAGTTGCGGTTCGGTGGTGTTGGCGAGGTGCATTACCACTTCGGTGAACACGTTGGAGTGGAATGAACCAGTATCGTGTTCGGAGGTTGGAGAGGGTGCTTTTCGGAGTGCTCGGGATGAAGTTAGCGACGGTGAAGTGGCGGAGGATTCTAGACCGTCTATTCCTGTCAGAGCTTTTTTCATCTCGACTAGTGTGGACTTGAGACGCTTGGTGGATCAGAATAAACACAACTTTATCCCACCATCTTCTCGGATGACAAATTATGTAGTTCTTAAGTTCGGGGATCTTTGTGATGTGAACAGTTATGGCGCCAGCATAAGTGGAAGTGACTGCTGTTTCATGGTAGTTTTTCAGTATGGCTCCATTGTGCTATTTAATGTTCGTGAATATGAGGTTGATGGGTATTTGAAAATTGTAGAGAAACATGCATCGGGATTGCTGCCTGAAATGAGAAAAGATGAGTATGAGGTCAGGGAGATGCCTGCCTTAGATACGTGGATGGAAGGGGGATTGGACTACATAATGCTGCAGTACTTGAATATTGATGGCATACGTACCATAGGTAGTGTTCTTGGCCAGAGCATTGCTCTTGATTACTATGGGCGGCAGGTTGATGGGATGGTTGCTGAATTCACTGACATAAACCGTGAAATGGAAGCAACTGGGAAGTTTAAAATGAAGAGGAAGAAACTTTTCCAATTGGTGGGAAAGGCAAATTCAAATCTTGCTGATGTCATTCTCAAGCTTGGACTTTTTGAAAGATCAGACATTGCGTGGAAAAATGCAAAATATGCCCAAATATGGGAATATCTGAGAGATGAGTTTGAGCTAACCCAGAGATTCGCAAGTTTGGATTTCAAATTGAAGTTTGTGGAGCATAATATTCGCTTCCTACAGGAGATTCTGCAAAACAGGAAATCAGATTTTTTGGAATGGCTGATCATTGCATTGATCGATCTTCATTCGCCATTTTCTTCATTCTCTCTCTCCCTCTGCGCGCCAAATACAAATTCTCTCATCTTTCCTTCTTCCCTCTGGATTCCAGATCTCCCTCACATGGCGGACCCTCCTACTAGTCCTGCCGGCGGCAGCCACGAGAGCGGCGGTGAGCAGAGCCCCCACACTGGCGGCGTTCGTGAGCAGGACCGTTACCTTCCGATCGCTAACATCAGTCGGATCATGAAGAAGGCCTTGCCTGCTAATGGCAAGATCGCCAAGGACGCTAAGGATACCGTCCAAGAATGCGTCTCCGAATTCATTAGCTTTATCACTAGCGAGTGCGTTTCTGATCTGTTTCGTTTTCTGGATCGTGGGGCGAGTGATAAGTGCCAGAAGGAGAAGAGGAAGACTATTAATGGCGATGATTTGCTTTGGGCCATGGCAACGTTGGGTTTCGAGGATTATATTGATCCGCTTAAGTCGTACCTTACTAGGTACCGTGAGTGTGATGCGAAAGGATCTTCGAGGGGTGGTGAAGAATCTGCTAAAAGAGATGCAGTTGGAGCCTTGCCTGGTCAAAATTCCCAGCAGTACTTGCAGCCAGGAGCATTGACCTACATTAACACTCAAGTCTCAGATATCCAAATTGAGCTCTGCCTCTGGAACAACCAGCCTTAG 1899 46.55 MWRTIDAHLRSVRLLPSLSVQSSSFSSSSSSSSSSTFLFNSGRSFFARSSSSLLSPVPKPHLITLSKPLASRVDANCLSSVLCFGLESLRLGGSSCGSVVLARCITTSVNTLEWNEPVSCSEVGEGAFRSARDEVSDGEVAEDSRPSIPVRAFFISTSVDLRRLVDQNKHNFIPPSSRMTNYVVLKFGDLCDVNSYGASISGSDCCFMVVFQYGSIVLFNVREYEVDGYLKIVEKHASGLLPEMRKDEYEVREMPALDTWMEGGLDYIMLQYLNIDGIRTIGSVLGQSIALDYYGRQVDGMVAEFTDINREMEATGKFKMKRKKLFQLVGKANSNLADVILKLGLFERSDIAWKNAKYAQIWEYLRDEFELTQRFASLDFKLKFVEHNIRFLQEILQNRKSDFLEWLIIALIDLHSPFSSFSLSLCAPNTNSLIFPSSLWIPDLPHMADPPTSPAGGSHESGGEQSPHTGGVREQDRYLPIANISRIMKKALPANGKIAKDAKDTVQECVSEFISFITSECVSDLFRFLDRGASDKCQKEKRKTINGDDLLWAMATLGFEDYIDPLKSYLTRYRECDAKGSSRGGEESAKRDAVGALPGQNSQQYLQPGALTYINTQVSDIQIELCLWNNQP 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1297081 1306463 + CmaCh04G002630.1 Cma04g00263 291344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00263 632 Gene3D Histone, subunit A 468 608 IPR009072 GO:0046982
Cma04g00263 632 SUPERFAMILY Histone-fold 475 586 IPR009072 GO:0046982
Cma04g00263 632 MobiDBLite consensus disorder prediction 450 472 - -
Cma04g00263 632 Pfam RMND1/Sif2-Sif3/Mrx10, DUF155 208 378 IPR003734 -
Cma04g00263 632 PANTHER REQUIRED FOR MEIOTIC NUCLEAR DIVISION PROTEIN 1 HOMOLOG 1 413 - -
Cma04g00263 632 PANTHER OS07G0694800 PROTEIN 1 413 - -
Cma04g00263 632 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 478 554 IPR003958 -
Cma04g00263 632 PRINTS CCAAT-binding transcription factor subunit A signature 537 555 - -
Cma04g00263 632 PRINTS CCAAT-binding transcription factor subunit A signature 556 574 - -
Cma04g00263 632 PRINTS CCAAT-binding transcription factor subunit A signature 506 524 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00263 Cma-Chr4:1297081 Cma12g00742 Cma-Chr12:4561021 4.36E-121 dispersed
Cma14g00188 Cma-Chr14:792274 Cma04g00263 Cma-Chr4:1297081 1.21E-63 wgd
Cma04g00263 Cma-Chr4:1297081 Cma04g01237 Cma-Chr4:6338289 0 wgd
Cma04g00263 Cma-Chr4:1297081 Cma06g00350 Cma-Chr6:1625029 1.94E-70 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34753 PF02582 DUF155 5.10E-27 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00263 - - cmo:103488742 635.565