Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00272 ATGGCTTACGTGGCCAAATGTACGAGCTCTCCACCAACGCCGACCACTCTTCCTAACCCCTTATCTTCCTCCGCCGCCACCAACTTCGTGTCGCCTCCCACTTCTCAACAGTTGTCGACGCCGGTCGCGGTGGTTCTTAGCCCCTGCGCCGCCTGCAAGATCCTACGGCGCCGCTGCATCGAGAAGTGCGTTTTGGCTCCTTATTTTCCTCCAACGGAGCCCCTCAAATTCACCATTGCTCATAGAGTGTTTGGAGCTAGCAATATCATCAAATTCTTGCAAGAGCTTCCAGAGTGTCAAAGAACAGATGCAGTGAGCAGTATGGTGTATGAAGCAAATGCAAGGGTACGAGATCCGGTGTACGGCAGCGCGGGCGCAATTTGCCAGCTGCAAACGCAAGTGAGCGAGTTGCAGGCACAGCTAGCCAAGGCCAGGGCAGAGGTAGCCAATATGCAGCAACAGCAAGCCAACTTATTAGCGTTGATTTGCATGGAAATGAAGCAATCAGCGGAGCCCATTTGGGCATCGCACCTTGCGGATACCACTTGCTTCCTTGACGATGCTACTCTTAGCGCACCGTGGGAGCCGCTCTGGACATGA 600 54.17 MAYVAKCTSSPPTPTTLPNPLSSSAATNFVSPPTSQQLSTPVAVVLSPCAACKILRRRCIEKCVLAPYFPPTEPLKFTIAHRVFGASNIIKFLQELPECQRTDAVSSMVYEANARVRDPVYGSAGAICQLQTQVSELQAQLAKARAEVANMQQQQANLLALICMEMKQSAEPIWASHLADTTCFLDDATLSAPWEPLWT 199
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1334411 1335362 + CmaCh04G002720.1 Cma04g00272 291353
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00272 199 Coils Coil 127 161 - -
Cma04g00272 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 1 37 174 - -
Cma04g00272 199 ProSiteProfiles LOB domain profile. 47 148 IPR004883 -
Cma04g00272 199 MobiDBLite consensus disorder prediction 1 20 - -
Cma04g00272 199 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 37 174 - -
Cma04g00272 199 Pfam Lateral organ boundaries (LOB) domain 48 145 IPR004883 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00272 Cma-Chr4:1334411 Cma02g00024 Cma-Chr2:124732 9.58E-50 dispersed
Cma13g00195 Cma-Chr13:1537977 Cma04g00272 Cma-Chr4:1334411 6.25E-72 wgd
Cma15g00433 Cma-Chr15:1939997 Cma04g00272 Cma-Chr4:1334411 1.01E-67 wgd
Cma02g00871 Cma-Chr2:5081153 Cma04g00272 Cma-Chr4:1334411 9.52E-74 wgd
Cma20g00467 Cma-Chr20:2255365 Cma04g00272 Cma-Chr4:1334411 6.14E-81 wgd
Cma04g00272 Cma-Chr4:1334411 Cma04g01242 Cma-Chr4:6371441 2.91E-110 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34754 PF03195 LOB 2.00E-39 No_clan Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00272 - - bhj:120081845 320.472