Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00287 ATGGATCTGGAAAGTGGGGTTCGTAGTGAAAAGAATGCCAAGAAAGAGTCATGGAAGGCGGTTTTGATGATGGCTTATCAGAGTCTTGGGGTTGTCTATGGCGAGTTGGGTACTTCGCCTCTGTATGTCTATAAGAACACTTTTGCAGAAGAAGATATCGGTCATTCGAAGAGCAACGATGAGATTTATGGCGTTTTGTCCTTTGTTTTTTGGACCCTCACCATTGTTCCTTTGCTCAAGTACATATTTATCGTTCTTAAAGCCGATGATAATGGCGAGGGAGGGACATTTGCTCTGTATTCGTTACTATGTCGGCATGCCAGAGTTAACGCATTACCCAATACCCAGTTGGCTGATTCTGAACTCACTGATTTCAAGATGGATGTTCTTGGTCCGCCATCTCAAGAAAGTTTTGGATTCAAACTCAAATCTGCCTTGGAAAAGCGTCAGGTTCTGCAAAAATTCTTGCTCGTTCTTGCTTTAATTGGGGCTTGCATGGTGATAGGAGATGGCATCTTAACACCAGCTATTTCTGTTCTTTCTGCGGTTTCTGGCCTCGAGCATACCATGAAGATAGAGCATCACCAATATATAATAATCCCGATTTCATGCGTCATACTGATATGCTTGTTTGCTCTTCAACACTACGGCACGCACAGGATTGGCTTCTTGTTTGCTCCAATAGTGACAGTGTGGCTATTCTGTATCAGTGCCATTGGCTTGTACAATATTATTCACTGGAATCCCAGTGTTTATAGAGCAATTTCTCCTACTTACATGTTTCGATTTCTTAAGAAAACACAAAAGGGAGGCTGGATGTCACTTGGTGGAATTATGCTGTGCATTACTGGTTCGGAGGCAATGTTCGCTGACCTTGGCCATTTTTCACAGTTGTCAATTAAGATTGCTTTCTCTTTTATGGTTTATCCGTCTCTCCTCCTAGCATACATGGGGCAAGCTGCCTATCTTTCTCAAAATTATACCTCTCCATCCGACCATCGAATCGGGTTTTATGTATCTGTACCTGAGAAATTGAGGTGGCCTGTCCTTATAATTGCTGTGCTTGCTGCTGTAGTAGGAAGCCAAGCTATAATCACCGGAACTTTCTCGATTATAAAACAGTGCTCTGCTTTGGGTTGCTTTCCTCGAGTCAAAATCGTCCATACGTCCTCTAAAGTTCACGGTCAAATCTATATCCCGGAGATTAATTGGATTTTGATGCTGTTGTGTTTGGCTGTTACCATAAGTTTCAGAGACACAAAGCGCTTGGGTCATGCCTCAGGTTTGGCAGTGATCACTGTCATGCTCGTTACTACGTGCTTAATGTCTCTTGTTATCGTCCTGTGTTGGCATCGAAGTGTATTTCTTGCCATAGGCTTCATCTTCTTCTTTGGGACCATTGAATCTCTCTACTTCTCAGCTTCTCTGATCAAATTTCTTGAAGGAGCTTGGGTTCCCATTGCAATTTCTCTTGTATTAATGATTGTTATGTATGTCTGGCACTATGGTACTCTAAAGAAGTTTGAATCTGACATTCAAAACAAGGTTTCTATTAACTGGCTACTTGGTTTGGGCCCAAGCCTCGGCATTGTAAGAGTCCGTGGGATCGGTGTCATTCAGACAGAGCTTGTGTCGGGAATCCCGGGTATCTTCACCCACTTTGTCACCAACATTCCTGCCTTCCATCAAGTTCTTGTTTTCCTTTGCATTAAATATGTCCCAGTGCCACATGTTAGAGCAGAGGAACGGTTCCTAATTGGTCGTATTGGTACAAGTGAATATAGACTGTATAGGTGCATTGTGCGATATGGATATCGGGACGTTCATAAAGACGACGTAGAGTTTGAGAATGATCTTATATGCAGCATAGCAGAGTTCATAAGATCAGGGAGTGCAGAGTGTAGTGATTCAAGACAGTGCTTTGATAACCATAGTGAAAAGATGACAGTCGTCGGGACATCGTCTACCTCCGAAGATAGAGTTCAGATGGCCGAGACAATTATGGATGAAAGCTCTGAAGATCTGTACAAAGCTTCAGACACAAGGGAAATAAGATCACCAGCTCCAGTTCAGTTGAGAAAACGAGTACGCTTCATTGTACCAGAGAGCCCGAAAATCGACACGGATACAAGGGAAGAACTACAAGAACTAATGGAAGCAAGAGAAGTAGGAGTGGCTTACATATTAGGACGGTCACACATGAAAGCGAAACAAGGATCGAGCACAGTGAAAAGAGTAATGATCGATTTCATTTACGAGTTCTTGAGGAAGAACAGCAGAGAAGCTGACTACCCTGTAGGTTTATCACACTCTTCATCAGCCCTTGAAGTGGGTATGATGTATTTGGTTTAG 2352 42.86 MDLESGVRSEKNAKKESWKAVLMMAYQSLGVVYGELGTSPLYVYKNTFAEEDIGHSKSNDEIYGVLSFVFWTLTIVPLLKYIFIVLKADDNGEGGTFALYSLLCRHARVNALPNTQLADSELTDFKMDVLGPPSQESFGFKLKSALEKRQVLQKFLLVLALIGACMVIGDGILTPAISVLSAVSGLEHTMKIEHHQYIIIPISCVILICLFALQHYGTHRIGFLFAPIVTVWLFCISAIGLYNIIHWNPSVYRAISPTYMFRFLKKTQKGGWMSLGGIMLCITGSEAMFADLGHFSQLSIKIAFSFMVYPSLLLAYMGQAAYLSQNYTSPSDHRIGFYVSVPEKLRWPVLIIAVLAAVVGSQAIITGTFSIIKQCSALGCFPRVKIVHTSSKVHGQIYIPEINWILMLLCLAVTISFRDTKRLGHASGLAVITVMLVTTCLMSLVIVLCWHRSVFLAIGFIFFFGTIESLYFSASLIKFLEGAWVPIAISLVLMIVMYVWHYGTLKKFESDIQNKVSINWLLGLGPSLGIVRVRGIGVIQTELVSGIPGIFTHFVTNIPAFHQVLVFLCIKYVPVPHVRAEERFLIGRIGTSEYRLYRCIVRYGYRDVHKDDVEFENDLICSIAEFIRSGSAECSDSRQCFDNHSEKMTVVGTSSTSEDRVQMAETIMDESSEDLYKASDTREIRSPAPVQLRKRVRFIVPESPKIDTDTREELQELMEAREVGVAYILGRSHMKAKQGSSTVKRVMIDFIYEFLRKNSREADYPVGLSHSSSALEVGMMYLV 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1406073 1411762 + CmaCh04G002870.1 Cma04g00287 291368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00287 783 PANTHER OSMOTIC STRESS POTASSIUM TRANSPORTER 1 782 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00287 783 TIGRFAM kup: potassium uptake protein 24 781 IPR003855 GO:0015079|GO:0016020|GO:0071805
Cma04g00287 783 PANTHER POTASSIUM TRANSPORTER 6 1 782 - -
Cma04g00287 783 Pfam K+ potassium transporter 26 607 IPR003855 GO:0015079|GO:0016020|GO:0071805
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00287 Cma-Chr4:1406073 Cma05g00002 Cma-Chr5:6807 0 dispersed
Cma04g00287 Cma-Chr4:1406073 Cma04g01716 Cma-Chr4:8636950 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00287 K03549 - csv:101212925 1388.63