Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00288 ATGGCATCAAGATCCCCCACAAATTTTTTGGACCTGGCTTCTGGAGATTTACTTGATCTTCCTCGTACACCTAGACCCCTACCACGGGTAATGACTGTTCCTGGAATTATTTCAGAAATGGATGACTATGGGAGCAATGACGGAGATTCGGAGTCTTCATCTGTATGCCGTGAGCGCAAAATCATAGTTGCAAATATGTTGCCCTTGCAAGCTAAAAAAGACGGGCAATCTGGCAAATGGTGCTTCAGTTTTGACGAGGATTCAATTTTATTGCAGTTAAAGAATGGGTTTTCACCTGAGATGGAGGTTATATACGTGGGTTCCCTCAAGGTTGAAATCGACGCCAATGAACAGGAAGAGGTTGCTCAGAAGCTTTTTGACAATTTTAATTGTGTACCTACATTTCTACCACATGATCTACAGAAGAAATTTTATCTTGGGTTCTGCAAACAACAGATATGGCCCTTATTCCATTACATGCTACCAATGTGCCCAGAGCACGGTGATCGCTTCGATCGGCTGCTCTGGCAAGCCTATGTTTCTGCAAATAAAATATTTGCTGACAAGGTGATGGAAATCATCAATCCTGAAGAAGATTCTGTTTGGGTTCATGATTACCATTTAATGGTTCTTCCAACATTTTTAAGGAAGCGCTACAATCGAGTTAAACTTGGATTTTTTCTGCATAGCCCGTTTCCGTCATCAGAAATCTATCGAACTTTACCAGTTCGGGATGAGATTCTCCGTGGCCTGCTAAACTGTGATTTAGTTGGTTTTCATACGTTTGATTATGCTCGTCACTTCCTCTCATGCTGCAGCAGAATGTTAGGCCTGGACTATGAATCTAAGCGGGGACATATTGGACTAGATTATTATGGCCGCACGGTATATATCAAAATTCTTCCTGTAGGCATTCACATGGGCCGGCTGGAATCGGTGATGAATCTTCCATCTACATCTGCTAAAGTCAGAGAAGTTCGAGATCAATTCATGGGGAAGAAATTAATTCTTGGTATTGATGACATGGACATTTTTAAGGGCATAAGCCTGAAGCTTCTCGCTGTGGAACAGCTTTTACGGCAACGTCCTGAGTTGCGAGGCAAAATAGTACTGGTTCAAATAGTGAACCCTGCAAGGGGATCAGGTAAAGATGTACATGAAGCTCAGAAGGAAACCTACTTGGCTGCTGAAAGGATCAATGAAGCTTATGGTTCAAATAACTACAAACCTGTAATTCTGATTGATCGCCCTGTTCCACGTTTTGAGAAGACTGCTTATTATGCATTAGCAGAATGCTGCATAGTGAGTGCTGTTAGGGATGGTATGAATTTGGTTCCATACAAGTATATTGTTTGTAGGCAAGGAACTCCTTTTATGGATAAGGCTATGGGCTTACAAGTTGGTTCTCCTCGGACGAGTATGCTTGTAGTGTCCGAGTTTATTGGTTGCTCGCCTTCTTTAAGTGGAGCTATCAGGGTTAACCCTTGGGACATTGATGCTGTCGCGGATGCCTTGGAATTGGCCATTACCATGCCGGAGTCAGAAAAGCAGTTGCGGCATGAGAAACATTATCGATATGTCAGTTCCCATGATATAGGATATTGGTCTCGAAGTTTTATGCTGGATTTAGAGAGAGCATGCCAAGATCACTATAGTAAACGGTGCTGGGGAATTGGCTTGGGTCTGCGTTTTAGAGTTGTTTCTCTTTCTCCTGGGTTTAGGAAGTTAACAATTGATCACATTGTCTCAGCTTACAAGAGAACACATAGAAGGGCGATATTTTTGGATTACGATGGCACTATTATTCCGCAAAGCTCCATAATTAAGACACCGAGCCCAGAAGTTATCTCCGTCTTGACTACGCTTTGCAATGACCCCTGTAACACTGTGTTCATTGTTAGTGGGAGGGGGAGAAGTTCTTTAGGTGAATGGTTTGCCTCTTGTGAGATGTTGGGGATTGCAGCAGAACATGGGTACTTTATAAGGTGGGGTGGAACTTCAGAATGGGAAACCAGTCCAGTGTCTTCTGATCTGGATTGGATTAAAATTGTAGAGCCAGTGATGAGATCATATACAGAAGCAACTGATGGGTCGTGCATAGAACCAAAAGAGAGTGCTTTAGTCTGGCATCATCAAGATGCCGATTCTGACTTCGGATCCTGTCAAGCCAAGGAATTGCTGGACCATCTAGAAAACGTACTTGCCAACGAACCAGCCGTTGTTAAAAGGGGTCAACATATTGTTGAAGTGAAGCCACAGGGAGTAAGCAAAGGGTTGGTCGCAGAAAAGGTTCTCTCGAGAATGGTAGATAGTGGAAGACCACCTGATTTTGTGATGTGCATCGGAGATGATAGATCAGATGAAGATATGTTCGAGAGCATATCAAGCATTGTCTCTAGTCCTTCACTGCCTTCCGCTCCAGAAATTTTTGCCTGCACTGTTGGGCGAAAGCCAAGCAAGGCGAAGTTCTACCTTGATGATACTTCCGACGTCGTGAAATTGCTGCAAGGCCTTGCCTCTACTTCACGTCCAAGACCTCGGCAACTACCCCAAATGCGTGTTTCCTTTGAAACTGTTGTTTTTTGGACCGTCTTCCGTTTTTCTTTTGGTGTTTTGGAATGGAATTCTTGCGGAACTAGGGACATGATTCGGGCCATTCGTGCTTGTAAAACTGCAGCAGAGGAACGTGCGGTAATTCGAAAAGAGTGTGCTGCTATTCGAGCTGCCATTGATGAGAATGATCATGACTACAGGCATCGAAACCTTGCCAAGCTCATGTTCATTCACATGCTTGGTTATCCCACACATTTTGGTCAAATGGAATGCTTGAAGTTGATTGCCTCTGCTGGTTTCCCAGAAAAGAGAATTGGGTATCTTGGCCTCATGTTACTTCTAGATGAAAGACAAGAAGTTCTGATAGATCTCAATCACTCAAACCAGTATATCGTAGGACTTGCTCTCTGTGCTTTAGGAAATATTTGTTCCGCTGAAATGGCTCGTGATCTTGCACCAGAAGTTGAAAGACTTCTACAGTTTCGAGACCCAAACATTAGGAAGAAAGCAGCATTGTGTTCAATTAGGATTATAAGGAAAGTACCAGACCTTGCAGAAAACTTTGTTAACCCTGCTGCCTCCTTACTGAAAGAAAAGCACCACGGGGTTATGATAACTGGAGTTCAACTGTGTACAGAGCTTTGCAAACACAGTTCAGAAGCCCTTGAATATTTTCGTAAGAAGTCAACAGAGGGTGCAGTCAAGACACTGAAGGATTTGGTTAATAGTCCATATGCCCCTGAGTATGATATTGCTGGAATAACGGACCCATTTCTCCACATCCGGTTGCTTAAGTTTTTGCGAGTCTTAGGCCATGAAGATGCAGATGCTAGTGACTACATGAATGATATACTTGCGCAGGTGGCAACAAAAACTGAATCAAACAAAAACGCAGGGAATGCTATTCTATATGAATGTGTTGAAACTATTATGAGTATTGAAGATAGTGGCGGCTTACGTGTGCTTGCTATCAATATCTTGGGCAGATTCTTGTCTAATCGTGATAACAATATCAGATATGTAGCATTGAACATGCTTATGAAGGCTATCACTGTAGATGGTCAAGCAGTGCAGAGACATCGAGCAACTATCTTGGAATGTGTAAAGGATTCAGATGCTTCAATTCGGAAGAGGGCCCTTGAACTTGTTTACCTTCTAGTGAATGAGAGCAATGTCAAGCCTCTGACCAAAGAGCTTATTGACTACCTGGAAGTTGCTGATCAAGAATTTAAGGGAGATCTTACTGCAAAAATTTGCTCAATTGTTGCAAAGTACTCCCCAGAGAAAATATGGTACATTGATCAGATGCTGAAGGTTCTCTCTGAGGCTGGAAATTTTGTAAAAGATGAAGTATGGCATGGCCTTATTGTCGTGATAAGCAATGCATCTGACCTTCATGGGTATACTGTAAGGGCCTTGTACAGAGCATTTCAGATATCTAGCGAACAGGAAAGTCTTGTTCGAGTGACAGTTTGGTGCATTGGAGAATATGGCGACATGTTGGTCAATAATATTGGAATGCTCGATATAGAGGATCCCATAGTTGTAACAGAATCTGATGCTGTGGATGTTGCCGAAACTGCTATTAAACGCCATAACTCAGATCTTACCATCAAAGCAATGGCCATGATTGCTTTGCTGAAGCTTTCTTCTCGTTTCCCATCATGTTCAGAGAGGATTAACCATTTAATTGTTCAATATAAAGGAAGCCTCGTGCTTGAATTGCAGCAAAGATCCATTGAATTCAATTCCATCATTGCAAGTCATCAGAATATGAGGTCTACATTGGTTGAAAGGATGCCAGTTTTGGATGAGGCAACATTCATTGGAAAAAGGGCTGGTTCTATTCCAGCATCTGTATCGTCTTCTAATAGGGCTGCAATTAATCTTCCAAATGGGGTTTCCAAATCTGCTGCTCCTCTCGTTGATTTACTTGATTTAAGTTCTGATGAGGTTCCTGTGCCTAGCTCTTCTGGTAGTGATTTTATTCAGGATCTTCTTGGGCTTGACTTGTCTGCAGCTCCAGAGCAATCTGGAAGTAATCCAGCTCCAAAAAGTGGAACTGATGTTCTATTGGATCTTTTGTCCATTGGAACAACCCCACCTGCACAGAGTAGTGCATTTCCAGCAGACATATTATCCAATCAAGAAAAATCGCCCACTTCTCAATTGGATGGACTTTCTTCTCTTTCTCTTCTTCCAGCAAGCAAAGCTTCCGCTCCTGTATCTTCTTCTACAATTGATTTGTTGGGTGGATTGGCCCCTAACGTGGCAAGTTCAGGTGGTAAACTCGTCAATGATGAGAATGGTTCAGTTTATCCATCTATAGTTGCATACGAGAGTGGATCTCTGAGAATAACTTTTGACTTCTCTAAGGCAGCTGGGAGCCCACAAACGACATTGATCCATGCCACATTTAAAAATTTATCTCCAAATGTCTATTCAAATTTCATTTTCCAGGCAGCAGTTCCGAAGTTTCTTCAACTGCATTTAGATCCAGCGAGTGGTAGTACTCTGCCTGGAAGTGGTAATGGGTCTATCACACAAAAGTTGAAAGTGACTAATAGCCAATATGGAAAGAAACATCTTGTGATGCGCCTAAGGATAGCGTACAAGGTGGATGACAAAGATATTTTGGAGGAGGCTCAAGTCAATAATTTCCCTCGTAACTTGTGA 5229 42.49 MASRSPTNFLDLASGDLLDLPRTPRPLPRVMTVPGIISEMDDYGSNDGDSESSSVCRERKIIVANMLPLQAKKDGQSGKWCFSFDEDSILLQLKNGFSPEMEVIYVGSLKVEIDANEQEEVAQKLFDNFNCVPTFLPHDLQKKFYLGFCKQQIWPLFHYMLPMCPEHGDRFDRLLWQAYVSANKIFADKVMEIINPEEDSVWVHDYHLMVLPTFLRKRYNRVKLGFFLHSPFPSSEIYRTLPVRDEILRGLLNCDLVGFHTFDYARHFLSCCSRMLGLDYESKRGHIGLDYYGRTVYIKILPVGIHMGRLESVMNLPSTSAKVREVRDQFMGKKLILGIDDMDIFKGISLKLLAVEQLLRQRPELRGKIVLVQIVNPARGSGKDVHEAQKETYLAAERINEAYGSNNYKPVILIDRPVPRFEKTAYYALAECCIVSAVRDGMNLVPYKYIVCRQGTPFMDKAMGLQVGSPRTSMLVVSEFIGCSPSLSGAIRVNPWDIDAVADALELAITMPESEKQLRHEKHYRYVSSHDIGYWSRSFMLDLERACQDHYSKRCWGIGLGLRFRVVSLSPGFRKLTIDHIVSAYKRTHRRAIFLDYDGTIIPQSSIIKTPSPEVISVLTTLCNDPCNTVFIVSGRGRSSLGEWFASCEMLGIAAEHGYFIRWGGTSEWETSPVSSDLDWIKIVEPVMRSYTEATDGSCIEPKESALVWHHQDADSDFGSCQAKELLDHLENVLANEPAVVKRGQHIVEVKPQGVSKGLVAEKVLSRMVDSGRPPDFVMCIGDDRSDEDMFESISSIVSSPSLPSAPEIFACTVGRKPSKAKFYLDDTSDVVKLLQGLASTSRPRPRQLPQMRVSFETVVFWTVFRFSFGVLEWNSCGTRDMIRAIRACKTAAEERAVIRKECAAIRAAIDENDHDYRHRNLAKLMFIHMLGYPTHFGQMECLKLIASAGFPEKRIGYLGLMLLLDERQEVLIDLNHSNQYIVGLALCALGNICSAEMARDLAPEVERLLQFRDPNIRKKAALCSIRIIRKVPDLAENFVNPAASLLKEKHHGVMITGVQLCTELCKHSSEALEYFRKKSTEGAVKTLKDLVNSPYAPEYDIAGITDPFLHIRLLKFLRVLGHEDADASDYMNDILAQVATKTESNKNAGNAILYECVETIMSIEDSGGLRVLAINILGRFLSNRDNNIRYVALNMLMKAITVDGQAVQRHRATILECVKDSDASIRKRALELVYLLVNESNVKPLTKELIDYLEVADQEFKGDLTAKICSIVAKYSPEKIWYIDQMLKVLSEAGNFVKDEVWHGLIVVISNASDLHGYTVRALYRAFQISSEQESLVRVTVWCIGEYGDMLVNNIGMLDIEDPIVVTESDAVDVAETAIKRHNSDLTIKAMAMIALLKLSSRFPSCSERINHLIVQYKGSLVLELQQRSIEFNSIIASHQNMRSTLVERMPVLDEATFIGKRAGSIPASVSSSNRAAINLPNGVSKSAAPLVDLLDLSSDEVPVPSSSGSDFIQDLLGLDLSAAPEQSGSNPAPKSGTDVLLDLLSIGTTPPAQSSAFPADILSNQEKSPTSQLDGLSSLSLLPASKASAPVSSSTIDLLGGLAPNVASSGGKLVNDENGSVYPSIVAYESGSLRITFDFSKAAGSPQTTLIHATFKNLSPNVYSNFIFQAAVPKFLQLHLDPASGSTLPGSGNGSITQKLKVTNSQYGKKHLVMRLRIAYKVDDKDILEEAQVNNFPRNL 1742
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1415601 1434814 + CmaCh04G002880.1 Cma04g00288 291369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00288 1742 Gene3D - 873 1455 IPR011989 -
Cma04g00288 1742 SUPERFAMILY HAD-like 591 839 IPR036412 -
Cma04g00288 1742 Gene3D Glycogen Phosphorylase B; 312 528 - -
Cma04g00288 1742 Gene3D - 1621 1741 - -
Cma04g00288 1742 PANTHER TREHALOSE-6-PHOSPHATE SYNTHASE 1 847 IPR001830 GO:0003824|GO:0005992
Cma04g00288 1742 SUPERFAMILY Clathrin adaptor appendage domain 1596 1741 IPR013041 -
Cma04g00288 1742 CDD HAD_TPP 592 833 - -
Cma04g00288 1742 Pfam Glycosyltransferase family 20 59 544 IPR001830 GO:0003824|GO:0005992
Cma04g00288 1742 TIGRFAM T6PP: trehalose-phosphatase 589 838 IPR003337 GO:0003824|GO:0005992
Cma04g00288 1742 SUPERFAMILY UDP-Glycosyltransferase/glycogen phosphorylase 59 547 - -
Cma04g00288 1742 Pfam Trehalose-phosphatase 594 829 IPR003337 GO:0003824|GO:0005992
Cma04g00288 1742 PANTHER ALPHA,ALPHA-TREHALOSE-PHOSPHATE SYNTHASE [UDP-FORMING] 9-RELATED 1 847 - -
Cma04g00288 1742 Pfam Adaptin N terminal region 895 1439 IPR002553 GO:0006886|GO:0016192|GO:0030117
Cma04g00288 1742 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 592 797 IPR006379 -
Cma04g00288 1742 Gene3D - 590 709 IPR023214 -
Cma04g00288 1742 Gene3D - 720 849 IPR023214 -
Cma04g00288 1742 SUPERFAMILY ARM repeat 894 1451 IPR016024 -
Cma04g00288 1742 CDD GT20_TPS 59 544 IPR001830 GO:0003824|GO:0005992
Cma04g00288 1742 SMART alpha_adaptinc2 1619 1739 IPR008152 GO:0006886|GO:0016192
Cma04g00288 1742 ProSiteProfiles Gamma-adaptin ear (GAE) domain profile. 1622 1739 IPR008153 -
Cma04g00288 1742 Pfam Adaptin C-terminal domain 1625 1739 IPR008152 GO:0006886|GO:0016192
Cma04g00288 1742 Gene3D Glycogen Phosphorylase B; 52 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01361 Cma-Chr2:7935323 Cma04g00288 Cma-Chr4:1415601 3.61E-69 dispersed
Cma04g00288 Cma-Chr4:1415601 Cma04g01713 Cma-Chr4:8612070 0 dispersed
Cma09g00761 Cma-Chr9:3666723 Cma04g00288 Cma-Chr4:1415601 3.46E-53 dispersed
Cma20g00544 Cma-Chr20:2617588 Cma04g00288 Cma-Chr4:1415601 3.64E-67 dispersed
Cma04g00288 Cma-Chr4:1415601 Cma04g01714 Cma-Chr4:8627964 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00288 K16055 - egt:105974598 2602.39