Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00298 ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTGCTCTGCCAGGAGGATTCCTCCGGTGTCTTGTCCGGTGAATCGCTGGGATGTTCTTCCGACCTCGACTCCCCGGCCTGCGTCGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTGGATGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTATGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGGCGTTTGCCGCAAACTAATGGGTGGCCTTTGCAACTACTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGCTGAGGGTATTGGATTGGCGGCTGCGCTCTGTAACGCCGTTCAATTTCATTGCATTCTTTGCTTGCAAGCTCGATCCATCTGGGGATTTCATGGGATTTCTTATTTCAAGAGCCACAGAAATTATAATATCAAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATAGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTGAATCCAGAGCATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAGTAGCCGAATCGAGTCCCCCAAAATCCTATCTCAGTTTAGAGTGACAGTCTGCACTAGAATGAGATCCAGCGACTTATCCCCCTACTCCTCTTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAATCAGAGCCTCTGGGTAGATGATGACAAAGATAACCCCGAAGAATGA 996 47.59 MSVSISNCFSDLLCQEDSSGVLSGESLGCSSDLDSPACVEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFMGFLISRATEIIISNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSSRIESPKILSQFRVTVCTRMRSSDLSPYSSSSSSSSSPNKRRKLNQSLWVDDDKDNPEE 331
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1480528 1482941 - CmaCh04G002980.1 Cma04g00298 291379
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00298 331 Gene3D - 56 173 - -
Cma04g00298 331 SMART Cyclin_C_2 175 310 IPR004367 -
Cma04g00298 331 Gene3D - 47 236 - -
Cma04g00298 331 SUPERFAMILY Cyclin-like 34 172 IPR036915 -
Cma04g00298 331 MobiDBLite consensus disorder prediction 295 331 - -
Cma04g00298 331 PANTHER CYCLIN-D1-1 8 318 - -
Cma04g00298 331 CDD CYCLIN 73 165 IPR013763 -
Cma04g00298 331 MobiDBLite consensus disorder prediction 295 316 - -
Cma04g00298 331 ProSitePatterns Cyclins signature. 73 104 IPR006671 -
Cma04g00298 331 SMART cyclin_7 78 166 IPR013763 -
Cma04g00298 331 Pfam Cyclin, N-terminal domain 43 172 IPR006671 -
Cma04g00298 331 SUPERFAMILY Cyclin-like 157 279 IPR036915 -
Cma04g00298 331 Pfam Cyclin, C-terminal domain 175 280 IPR004367 -
Cma04g00298 331 PANTHER CYCLINS 8 318 IPR039361 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma01g01787 Cma-Chr1:11955870 Cma04g00298 Cma-Chr4:1480528 1.14E-39 dispersed
Cma04g00298 Cma-Chr4:1480528 Cma05g00923 Cma-Chr5:7375401 3.15E-155 dispersed
Cma07g00653 Cma-Chr7:2850156 Cma04g00298 Cma-Chr4:1480528 1.62E-34 dispersed
Cma04g00298 Cma-Chr4:1480528 Cma04g01592 Cma-Chr4:8051224 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00298 K18810 - csv:101209417 565.074