Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00298 | ATGTCCGTATCGATTTCCAACTGCTTCTCTGATTTGCTCTGCCAGGAGGATTCCTCCGGTGTCTTGTCCGGTGAATCGCTGGGATGTTCTTCCGACCTCGACTCCCCGGCCTGCGTCGAGGAATCTATCGCCGTCTTCATCAAGGATGAGCGTCACTTCGTCCCCGATTACGACTGTTTGTCGCGCTTCCAATCTCCGTCGCTGGATGCGGCCGCTAGATTAGACTCTGTTGCATGGATTCTTAAGGTTCAAGCCTATTATGGTTTTCAGCCGTTGACGGCGTATCTCTCCGTCAACTACTTGGATCGATTCCTTTGTTCACGGCGTTTGCCGCAAACTAATGGGTGGCCTTTGCAACTACTCTCTGTTGCTTGCCTCTCACTGGCTGCTAAAATGGAGGAACCTCTTGTTCCTGCTTTACTGGATCTTCAGGTTGAGGGGGCCAAATATATATTTGAACCCAGAACAATATGCAGGATGGAATTACTGGTGCTGAGGGTATTGGATTGGCGGCTGCGCTCTGTAACGCCGTTCAATTTCATTGCATTCTTTGCTTGCAAGCTCGATCCATCTGGGGATTTCATGGGATTTCTTATTTCAAGAGCCACAGAAATTATAATATCAAATATCCGAGAGGTAATCTTTCTGGAGTACTGGCCATCGTGTATAGCGGCGGCCGCCTTGCTTTGTGCAGCAAATGAAGTCCCGAATTTGTCTGTTGTGAATCCAGAGCATGCTGAATCATGGTGCAGTGGTCTAAGGAAAGAAAATATCATCGGCTGCTACCGGTTAATGCAAGAGATTGTGCTTGATAGTAGCCGAATCGAGTCCCCCAAAATCCTATCTCAGTTTAGAGTGACAGTCTGCACTAGAATGAGATCCAGCGACTTATCCCCCTACTCCTCTTCTTCCTCATCTTCGTCATCACCAAACAAAAGGAGAAAATTAAATCAGAGCCTCTGGGTAGATGATGACAAAGATAACCCCGAAGAATGA | 996 | 47.59 | MSVSISNCFSDLLCQEDSSGVLSGESLGCSSDLDSPACVEESIAVFIKDERHFVPDYDCLSRFQSPSLDAAARLDSVAWILKVQAYYGFQPLTAYLSVNYLDRFLCSRRLPQTNGWPLQLLSVACLSLAAKMEEPLVPALLDLQVEGAKYIFEPRTICRMELLVLRVLDWRLRSVTPFNFIAFFACKLDPSGDFMGFLISRATEIIISNIREVIFLEYWPSCIAAAALLCAANEVPNLSVVNPEHAESWCSGLRKENIIGCYRLMQEIVLDSSRIESPKILSQFRVTVCTRMRSSDLSPYSSSSSSSSSPNKRRKLNQSLWVDDDKDNPEE | 331 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1480528 | 1482941 | - | CmaCh04G002980.1 | Cma04g00298 | 291379 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00298 | 331 | Gene3D | - | 56 | 173 | - | - | |
Cma04g00298 | 331 | SMART | Cyclin_C_2 | 175 | 310 | IPR004367 | - | |
Cma04g00298 | 331 | Gene3D | - | 47 | 236 | - | - | |
Cma04g00298 | 331 | SUPERFAMILY | Cyclin-like | 34 | 172 | IPR036915 | - | |
Cma04g00298 | 331 | MobiDBLite | consensus disorder prediction | 295 | 331 | - | - | |
Cma04g00298 | 331 | PANTHER | CYCLIN-D1-1 | 8 | 318 | - | - | |
Cma04g00298 | 331 | CDD | CYCLIN | 73 | 165 | IPR013763 | - | |
Cma04g00298 | 331 | MobiDBLite | consensus disorder prediction | 295 | 316 | - | - | |
Cma04g00298 | 331 | ProSitePatterns | Cyclins signature. | 73 | 104 | IPR006671 | - | |
Cma04g00298 | 331 | SMART | cyclin_7 | 78 | 166 | IPR013763 | - | |
Cma04g00298 | 331 | Pfam | Cyclin, N-terminal domain | 43 | 172 | IPR006671 | - | |
Cma04g00298 | 331 | SUPERFAMILY | Cyclin-like | 157 | 279 | IPR036915 | - | |
Cma04g00298 | 331 | Pfam | Cyclin, C-terminal domain | 175 | 280 | IPR004367 | - | |
Cma04g00298 | 331 | PANTHER | CYCLINS | 8 | 318 | IPR039361 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma01g01787 | Cma-Chr1:11955870 | Cma04g00298 | Cma-Chr4:1480528 | 1.14E-39 | dispersed | |
Cma04g00298 | Cma-Chr4:1480528 | Cma05g00923 | Cma-Chr5:7375401 | 3.15E-155 | dispersed | |
Cma07g00653 | Cma-Chr7:2850156 | Cma04g00298 | Cma-Chr4:1480528 | 1.62E-34 | dispersed | |
Cma04g00298 | Cma-Chr4:1480528 | Cma04g01592 | Cma-Chr4:8051224 | 0 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00298 | K18810 | - | csv:101209417 | 565.074 |