Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g00304 | ATGGCTAGAACCCCTGTTTTCTCCCGCCGGCGGAGGTCCGATCAAATTGACACTCGAGATCGCTTCCCCACCTCTGATTCCGAAGTCCATGTTCTCGCCGTCGATGATAGCCTCGTCGACCGTAAAGTAATAGAGCGGCTCCTCCGCCTCACCGCCTGCCGAGTTACTGCTGTGGATAGTGGAATCAGAGCTCTACAATATCTTGGATTGCAAGATGAGACGAATTCCCAAGTGGGTTTCGATAGCTTGAAGGTGGATATGATCATTACCGACTACTGTATGCCCGGAATGACAGGCTACGAATTGCTCAAGAAAATAAAGGAATCTTCAACTCTGCGAGAGATTCCGGTGGTGATTATGTCGTCGGAAAACGTGGTGGCGAGGATAGACAGGTGTTTAGAGGAAGGAGCAGAGGATTTCATAGTGAAGCCGGTGAAATTATCGGATGTGAAACGGCTGAGGGAATATATGGTGGGGGACGAAAAGACCGGAAGTGAAATAAGTTGGATGAACAAAAGAACGGTACGAGAGTCGTCGTGTGATGAAGCCTCATCATCACCGTCCATTTCATCCGATTCTTCTCCATCATCATCATCATCACCGTCCATTTCATCCGATTCTTCTCCATCGTCTTCATCACCGCCAGATTCGGTTCAATCCACGCCGTCCCCATCAGAGCCGTCTTCACCGACGTCCACCCAATCCGACGACGGATCTAAATGA | 723 | 49.65 | MARTPVFSRRRRSDQIDTRDRFPTSDSEVHVLAVDDSLVDRKVIERLLRLTACRVTAVDSGIRALQYLGLQDETNSQVGFDSLKVDMIITDYCMPGMTGYELLKKIKESSTLREIPVVIMSSENVVARIDRCLEEGAEDFIVKPVKLSDVKRLREYMVGDEKTGSEISWMNKRTVRESSCDEASSSPSISSDSSPSSSSSPSISSDSSPSSSSPPDSVQSTPSPSEPSSPTSTQSDDGSK | 240 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1510000 | 1511440 | + | CmaCh04G003040.1 | Cma04g00304 | 291385 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g00304 | 240 | Gene3D | - | 29 | 188 | - | - | |
| Cma04g00304 | 240 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 11 | 233 | IPR045279 | GO:0009736 | |
| Cma04g00304 | 240 | MobiDBLite | consensus disorder prediction | 178 | 240 | - | - | |
| Cma04g00304 | 240 | Pfam | Response regulator receiver domain | 31 | 150 | IPR001789 | GO:0000160 | |
| Cma04g00304 | 240 | ProSiteProfiles | Response regulatory domain profile. | 30 | 158 | IPR001789 | GO:0000160 | |
| Cma04g00304 | 240 | CDD | REC_typeA_ARR | 31 | 153 | - | - | |
| Cma04g00304 | 240 | SUPERFAMILY | CheY-like | 29 | 156 | IPR011006 | - | |
| Cma04g00304 | 240 | MobiDBLite | consensus disorder prediction | 7 | 22 | - | - | |
| Cma04g00304 | 240 | MobiDBLite | consensus disorder prediction | 1 | 22 | - | - | |
| Cma04g00304 | 240 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR ARR3-RELATED | 11 | 233 | - | - | |
| Cma04g00304 | 240 | SMART | REC_2 | 29 | 154 | IPR001789 | GO:0000160 |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00304 | Cma-Chr4:1510000 | Cma10g00154 | Cma-Chr10:701443 | 2.16E-68 | dispersed | |
| Cma04g00304 | Cma-Chr4:1510000 | Cma04g01600 | Cma-Chr4:8080872 | 3.61E-120 | wgd |
Transcription factors information
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| 34756 | PF00072 | Response_reg | 1.10E-21 | CL0304 | Cma | TR |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g00304 | K14492 | - | csv:101209506 | 318.546 |