Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cma04g00306 | ATGGCTATGCTGCTTCAGCTTCACCTTCGCCGTCAGCCATGGCCTCTTCATCTCCTACTTCTCTTCCTCTCTGTTTCCCCTGTTTCTTATTGCCAAGACACTCCACCTCAAAATATCGAAACTTTCTACCCAATTCTTCCTCCACCACCGTTCTTACCTGACCATCCGCCGCCGCCGCTGCCGCCCCCGTCGTCGTCGTCGACGACGAGGACCATCGTGACGGCGGTGGCTATCACTGCAGTGGGCATGGCTCTGATTTCCACGGTGTTCTTCTTTTTAATCCAGAGATACCTGGTCAGAAGAAAACAGAAAACAGAGGAGGTGAATTCGGGTCCGGGTCAGGGGCCGGTGTCGCAGCCGGCGGTTGCTCGGAATGAATTTGCGCGTGTTGATGGGAATCTTAAGGGGTTTATTGTGGATGAAGATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAGAAGGAAATCTAAGAATAGCTTTGATCGGGGTGATGGAGAAGGAAATGTTCAAGCAAATCGAAGCAAAAAGTCAGAGCCTGTTCAAGAGATTCCTTTACTTCGAGGAAAATCTTCGAGTTCTCATGTTAAAATTTCACCGGAAGATGAAGAACCCCGTCGTGTTACTCCTCCGCCACCTCCGCCACCGCCCCACATTAACAACCCTCCGCCATTTACTGGGAAGTCTGTTCAGGAAGTTGGAAAACCATCGAGCAGTTCAATTCTTTCATCATCTGCACCACCGCAACCAACGGCAATTCCGGTACCTCCGTCACAATCTCTCATGGCTGTTCCTAACAATAAGTGCTCTGTTCCACCACCACCGCCGCCAATTCCAGCCAAGACCGTTTCAAGACCGCCACCGCCGCCTCCTCCCATTGCTACCAAGACCAATTCAAGACCGCCGCCACCGCCTCCCATTCCAGCCAAGACCAATTCAGCAGCCCCACCTCCCCCTCCAATAGTGGCCAAGGCAAATCCGGCAGCACCGCCGCCGCCCAAGGCCGGCAGTTCCAAATTGCCGTTACGGCCTGCACCTCAAAAAGAGGGTAAATCCTCTGGAGAATCTTCTACATCGGCCGACAATGGTCAGGTTAAAATGAAACCTCTGCATTGGGATAAAGTGAACACCGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGCAAGCCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTGTTTGGATACGTCGCAACCAACCGGAAGTCCCCCCGGAGTGAGGCTAATTCTTCAGTAATCCCCACTGGCCGGAACTCAGGGCCATCGCAGACTTTCATTCTTGAACCCAAAAAGTCACAGAACATAGCCATTGTAGTCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGCCAAGGCCTCGAAACAGATATTCTTGAAAAACTCACGAGAATTACTCTGACACAAGAAGAAATTTCTCAAATTCTTGCTTACAAAGGAGACCCTCAAAAGCTTGCTGATGCCGAAACTTTCCTTTACCATCTCCTCAAATCGGTTCCATCTGCCTTTGCGCGGTTCAACGCCATGCTTTTCCGATTGACTTTCGGCTCTGATATTCATCATCTAAAGGAATCTCTAGAAATTCTGGAATCGGCCTGCAAGGAGCTTAGAACTCGAGGGCTGTTTCTGAAACTGCTTGAAGCAGTTCTCAAAGCTGGGAATCGGCTGAATGCGGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTTCAGCTCTCCGGAAGCTCTCGGATGTTAGAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTGGTGCAAGAAGTCATCAGAGCAGAAGGGAAAAGGTGTGTTTTAAATAGGAACAAGAGCTTGAGCCGTAACACCAGCCATGCCAGCGACAGCAGCGTTAGTACTTCCGATAATTCATCTTCGAAAGAGGACAGAGTAAATGAATACATGATGTTGGGGTTGCCAGTGGTGGGAGGTCTGAGCGCTGAGTTCTCTAATGTAAAGAAGGCAGCAACGATCGACTATGAGAGCTTCGCCAACACCGGAACGTCTCTGACCAGCCGAACTGCAGAAATCCGGCAGCTCATGGCTCAAATTGGGAACAATGGAGGTGGGTTTGGGAAAGAAATGAGAGGGTTTCTTGAGGCAGCAGAGAGTGAGCTGAAGGTGGTGAGAGAAGAACAGACGAAGGTGATGGAGCTCGTGATGAAGACAACAGAGTATTATCAAGCTGGAAGTTCAAGAGATAAGGAATCAAATCGGCTTCAATTCTTCACCATAGTTAAGGATTTTCTAGAAATGGTAGATCGGGTGTGTGTGGAAATTTCTAGAAATCTCCAGAAAAGAAGATCGTCGACAGTAAATGTGGGTTCATCGCCGGTGAGATCGAAGGCCATCTTCCCTAACCTGCCGGCAAATTTTATGTCAGACAAGTCAAGAGGGAGTTCTAGTGATTCAGATAATGAATTCTGA | 2493 | 48.9 | MAMLLQLHLRRQPWPLHLLLLFLSVSPVSYCQDTPPQNIETFYPILPPPPFLPDHPPPPLPPPSSSSTTRTIVTAVAITAVGMALISTVFFFLIQRYLVRRKQKTEEVNSGPGQGPVSQPAVARNEFARVDGNLKGFIVDEDGLDVIYWKRLERRKSKNSFDRGDGEGNVQANRSKKSEPVQEIPLLRGKSSSSHVKISPEDEEPRRVTPPPPPPPPHINNPPPFTGKSVQEVGKPSSSSILSSSAPPQPTAIPVPPSQSLMAVPNNKCSVPPPPPPIPAKTVSRPPPPPPPIATKTNSRPPPPPPIPAKTNSAAPPPPPIVAKANPAAPPPPKAGSSKLPLRPAPQKEGKSSGESSTSADNGQVKMKPLHWDKVNTANADHSMVWDKMQAGSFKFDGDLMEALFGYVATNRKSPRSEANSSVIPTGRNSGPSQTFILEPKKSQNIAIVVKSLTIPRNEILDALNEGQGLETDILEKLTRITLTQEEISQILAYKGDPQKLADAETFLYHLLKSVPSAFARFNAMLFRLTFGSDIHHLKESLEILESACKELRTRGLFLKLLEAVLKAGNRLNAGTARGNARAFNLSALRKLSDVRSTDGKTTLLHFVVQEVIRAEGKRCVLNRNKSLSRNTSHASDSSVSTSDNSSSKEDRVNEYMMLGLPVVGGLSAEFSNVKKAATIDYESFANTGTSLTSRTAEIRQLMAQIGNNGGGFGKEMRGFLEAAESELKVVREEQTKVMELVMKTTEYYQAGSSRDKESNRLQFFTIVKDFLEMVDRVCVEISRNLQKRRSSTVNVGSSPVRSKAIFPNLPANFMSDKSRGSSSDSDNEF | 830 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 4 | 1513635 | 1516472 | + | CmaCh04G003060.1 | Cma04g00306 | 291387 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cma04g00306 | 830 | PANTHER | FORMIN-LIKE PROTEIN 4 | 16 | 307 | - | - | |
| Cma04g00306 | 830 | PANTHER | FORMIN-LIKE PROTEIN 4 | 300 | 826 | - | - | |
| Cma04g00306 | 830 | Gene3D | Formin, FH2 domain | 357 | 786 | IPR042201 | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 350 | 364 | - | - | |
| Cma04g00306 | 830 | PANTHER | FORMIN-RELATED | 16 | 307 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Cma04g00306 | 830 | PANTHER | FORMIN-RELATED | 300 | 826 | IPR027643 | GO:0003779|GO:0030036|GO:0045010|GO:0051015 | |
| Cma04g00306 | 830 | Coils | Coil | 721 | 741 | - | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 158 | 365 | - | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 628 | 647 | - | - | |
| Cma04g00306 | 830 | SUPERFAMILY | Formin homology 2 domain (FH2 domain) | 370 | 790 | - | - | |
| Cma04g00306 | 830 | Pfam | Formin Homology 2 Domain | 360 | 776 | IPR015425 | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 224 | 248 | - | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 268 | 339 | - | - | |
| Cma04g00306 | 830 | ProSiteProfiles | Formin homology-2 (FH2) domain profile. | 357 | 801 | IPR015425 | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 209 | 223 | - | - | |
| Cma04g00306 | 830 | Coils | Coil | 535 | 555 | - | - | |
| Cma04g00306 | 830 | MobiDBLite | consensus disorder prediction | 628 | 650 | - | - | |
| Cma04g00306 | 830 | SMART | it6_source | 357 | 790 | IPR015425 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cma04g00306 | Cma-Chr4:1513635 | Cma05g00928 | Cma-Chr5:7504702 | 2.98E-10 | dispersed | |
| Cma05g00930 | Cma-Chr5:7539370 | Cma04g00306 | Cma-Chr4:1513635 | 4.21E-33 | dispersed | |
| Cma04g00306 | Cma-Chr4:1513635 | Cma04g01601 | Cma-Chr4:8084704 | 0 | wgd |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cma04g00306 | - | - | mcha:111019114 | 1075.85 |