Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00306 ATGGCTATGCTGCTTCAGCTTCACCTTCGCCGTCAGCCATGGCCTCTTCATCTCCTACTTCTCTTCCTCTCTGTTTCCCCTGTTTCTTATTGCCAAGACACTCCACCTCAAAATATCGAAACTTTCTACCCAATTCTTCCTCCACCACCGTTCTTACCTGACCATCCGCCGCCGCCGCTGCCGCCCCCGTCGTCGTCGTCGACGACGAGGACCATCGTGACGGCGGTGGCTATCACTGCAGTGGGCATGGCTCTGATTTCCACGGTGTTCTTCTTTTTAATCCAGAGATACCTGGTCAGAAGAAAACAGAAAACAGAGGAGGTGAATTCGGGTCCGGGTCAGGGGCCGGTGTCGCAGCCGGCGGTTGCTCGGAATGAATTTGCGCGTGTTGATGGGAATCTTAAGGGGTTTATTGTGGATGAAGATGGGTTGGATGTGATTTATTGGAAGAGACTTGAAAGAAGGAAATCTAAGAATAGCTTTGATCGGGGTGATGGAGAAGGAAATGTTCAAGCAAATCGAAGCAAAAAGTCAGAGCCTGTTCAAGAGATTCCTTTACTTCGAGGAAAATCTTCGAGTTCTCATGTTAAAATTTCACCGGAAGATGAAGAACCCCGTCGTGTTACTCCTCCGCCACCTCCGCCACCGCCCCACATTAACAACCCTCCGCCATTTACTGGGAAGTCTGTTCAGGAAGTTGGAAAACCATCGAGCAGTTCAATTCTTTCATCATCTGCACCACCGCAACCAACGGCAATTCCGGTACCTCCGTCACAATCTCTCATGGCTGTTCCTAACAATAAGTGCTCTGTTCCACCACCACCGCCGCCAATTCCAGCCAAGACCGTTTCAAGACCGCCACCGCCGCCTCCTCCCATTGCTACCAAGACCAATTCAAGACCGCCGCCACCGCCTCCCATTCCAGCCAAGACCAATTCAGCAGCCCCACCTCCCCCTCCAATAGTGGCCAAGGCAAATCCGGCAGCACCGCCGCCGCCCAAGGCCGGCAGTTCCAAATTGCCGTTACGGCCTGCACCTCAAAAAGAGGGTAAATCCTCTGGAGAATCTTCTACATCGGCCGACAATGGTCAGGTTAAAATGAAACCTCTGCATTGGGATAAAGTGAACACCGCAAATGCCGATCATTCCATGGTTTGGGACAAAATGCAAGCCGGTTCTTTCAAATTTGATGGGGATCTTATGGAAGCTCTGTTTGGATACGTCGCAACCAACCGGAAGTCCCCCCGGAGTGAGGCTAATTCTTCAGTAATCCCCACTGGCCGGAACTCAGGGCCATCGCAGACTTTCATTCTTGAACCCAAAAAGTCACAGAACATAGCCATTGTAGTCAAGTCCTTGACCATTCCTCGCAACGAAATCCTCGATGCGCTCAACGAAGGCCAAGGCCTCGAAACAGATATTCTTGAAAAACTCACGAGAATTACTCTGACACAAGAAGAAATTTCTCAAATTCTTGCTTACAAAGGAGACCCTCAAAAGCTTGCTGATGCCGAAACTTTCCTTTACCATCTCCTCAAATCGGTTCCATCTGCCTTTGCGCGGTTCAACGCCATGCTTTTCCGATTGACTTTCGGCTCTGATATTCATCATCTAAAGGAATCTCTAGAAATTCTGGAATCGGCCTGCAAGGAGCTTAGAACTCGAGGGCTGTTTCTGAAACTGCTTGAAGCAGTTCTCAAAGCTGGGAATCGGCTGAATGCGGGAACTGCAAGAGGAAATGCCAGAGCTTTCAACCTTTCAGCTCTCCGGAAGCTCTCGGATGTTAGAAGCACTGATGGGAAAACCACTTTGCTTCACTTTGTGGTGCAAGAAGTCATCAGAGCAGAAGGGAAAAGGTGTGTTTTAAATAGGAACAAGAGCTTGAGCCGTAACACCAGCCATGCCAGCGACAGCAGCGTTAGTACTTCCGATAATTCATCTTCGAAAGAGGACAGAGTAAATGAATACATGATGTTGGGGTTGCCAGTGGTGGGAGGTCTGAGCGCTGAGTTCTCTAATGTAAAGAAGGCAGCAACGATCGACTATGAGAGCTTCGCCAACACCGGAACGTCTCTGACCAGCCGAACTGCAGAAATCCGGCAGCTCATGGCTCAAATTGGGAACAATGGAGGTGGGTTTGGGAAAGAAATGAGAGGGTTTCTTGAGGCAGCAGAGAGTGAGCTGAAGGTGGTGAGAGAAGAACAGACGAAGGTGATGGAGCTCGTGATGAAGACAACAGAGTATTATCAAGCTGGAAGTTCAAGAGATAAGGAATCAAATCGGCTTCAATTCTTCACCATAGTTAAGGATTTTCTAGAAATGGTAGATCGGGTGTGTGTGGAAATTTCTAGAAATCTCCAGAAAAGAAGATCGTCGACAGTAAATGTGGGTTCATCGCCGGTGAGATCGAAGGCCATCTTCCCTAACCTGCCGGCAAATTTTATGTCAGACAAGTCAAGAGGGAGTTCTAGTGATTCAGATAATGAATTCTGA 2493 48.9 MAMLLQLHLRRQPWPLHLLLLFLSVSPVSYCQDTPPQNIETFYPILPPPPFLPDHPPPPLPPPSSSSTTRTIVTAVAITAVGMALISTVFFFLIQRYLVRRKQKTEEVNSGPGQGPVSQPAVARNEFARVDGNLKGFIVDEDGLDVIYWKRLERRKSKNSFDRGDGEGNVQANRSKKSEPVQEIPLLRGKSSSSHVKISPEDEEPRRVTPPPPPPPPHINNPPPFTGKSVQEVGKPSSSSILSSSAPPQPTAIPVPPSQSLMAVPNNKCSVPPPPPPIPAKTVSRPPPPPPPIATKTNSRPPPPPPIPAKTNSAAPPPPPIVAKANPAAPPPPKAGSSKLPLRPAPQKEGKSSGESSTSADNGQVKMKPLHWDKVNTANADHSMVWDKMQAGSFKFDGDLMEALFGYVATNRKSPRSEANSSVIPTGRNSGPSQTFILEPKKSQNIAIVVKSLTIPRNEILDALNEGQGLETDILEKLTRITLTQEEISQILAYKGDPQKLADAETFLYHLLKSVPSAFARFNAMLFRLTFGSDIHHLKESLEILESACKELRTRGLFLKLLEAVLKAGNRLNAGTARGNARAFNLSALRKLSDVRSTDGKTTLLHFVVQEVIRAEGKRCVLNRNKSLSRNTSHASDSSVSTSDNSSSKEDRVNEYMMLGLPVVGGLSAEFSNVKKAATIDYESFANTGTSLTSRTAEIRQLMAQIGNNGGGFGKEMRGFLEAAESELKVVREEQTKVMELVMKTTEYYQAGSSRDKESNRLQFFTIVKDFLEMVDRVCVEISRNLQKRRSSTVNVGSSPVRSKAIFPNLPANFMSDKSRGSSSDSDNEF 830
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1513635 1516472 + CmaCh04G003060.1 Cma04g00306 291387

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00306 830 PANTHER FORMIN-LIKE PROTEIN 4 16 307 - -
Cma04g00306 830 PANTHER FORMIN-LIKE PROTEIN 4 300 826 - -
Cma04g00306 830 Gene3D Formin, FH2 domain 357 786 IPR042201 -
Cma04g00306 830 MobiDBLite consensus disorder prediction 350 364 - -
Cma04g00306 830 PANTHER FORMIN-RELATED 16 307 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma04g00306 830 PANTHER FORMIN-RELATED 300 826 IPR027643 GO:0003779|GO:0030036|GO:0045010|GO:0051015
Cma04g00306 830 Coils Coil 721 741 - -
Cma04g00306 830 MobiDBLite consensus disorder prediction 158 365 - -
Cma04g00306 830 MobiDBLite consensus disorder prediction 628 647 - -
Cma04g00306 830 SUPERFAMILY Formin homology 2 domain (FH2 domain) 370 790 - -
Cma04g00306 830 Pfam Formin Homology 2 Domain 360 776 IPR015425 -
Cma04g00306 830 MobiDBLite consensus disorder prediction 224 248 - -
Cma04g00306 830 MobiDBLite consensus disorder prediction 268 339 - -
Cma04g00306 830 ProSiteProfiles Formin homology-2 (FH2) domain profile. 357 801 IPR015425 -
Cma04g00306 830 MobiDBLite consensus disorder prediction 209 223 - -
Cma04g00306 830 Coils Coil 535 555 - -
Cma04g00306 830 MobiDBLite consensus disorder prediction 628 650 - -
Cma04g00306 830 SMART it6_source 357 790 IPR015425 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00306 - - - mcha:111019114 1075.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00306 Cma-Chr4:1513635 Cma05g00928 Cma-Chr5:7504702 2.98E-10 dispersed
Cma05g00930 Cma-Chr5:7539370 Cma04g00306 Cma-Chr4:1513635 4.21E-33 dispersed
Cma04g00306 Cma-Chr4:1513635 Cma04g01601 Cma-Chr4:8084704 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma04g01882 . 446 887 FH2 protein (formin) Gene Family AT3G25500 65.8 4.1e-152 536.6
Cma02g00531 . 405 884 FH2 protein (formin) Gene Family AT3G25500 57.3 4.7e-140 496.5
Cma10g01113 CCT,CST 487 888 FH2 protein (formin) Gene Family AT3G25500 50.7 2.3e-102 371.3
Cma11g01134 CST 381 777 FH2 protein (formin) Gene Family AT3G25500 51.6 2.3e-102 371.3
Cma02g01659 . 620 1068 FH2 protein (formin) Gene Family AT2G43800 59.8 3.6e-141 500.0
Cma19g00185 . 618 1071 FH2 protein (formin) Gene Family AT2G43800 59.2 1.2e-139 495.0
Cma02g00531 . 462 900 FH2 protein (formin) Gene Family AT2G43800 54.8 6.2e-125 446.0
Cma20g00639 CST 219 554 FH2 protein (formin) Gene Family AT4G15200 52.5 3.1e-51 200.3
Cma02g00145 CST 459 622 FH2 protein (formin) Gene Family AT4G15200 63.9 3.8e-49 193.4
Cma01g01155 CST 511 649 FH2 protein (formin) Gene Family AT4G15200 66.4 6.6e-46 182.6
Cma09g00921 CST 502 640 FH2 protein (formin) Gene Family AT4G15200 65.7 3.3e-45 180.3
Cma09g00921 CST 502 944 FH2 protein (formin) Gene Family AT5G54650 67.0 1.3e-167 587.8
Cma01g01155 CST 511 948 FH2 protein (formin) Gene Family AT5G54650 68.1 1.7e-167 587.4
Cma02g00145 CST 464 957 FH2 protein (formin) Gene Family AT5G54650 57.7 3.9e-151 533.1
Cma20g00639 CST 420 829 FH2 protein (formin) Gene Family AT5G54650 65.6 1.8e-148 524.2
Cma02g01659 . 623 1024 FH2 protein (formin) Gene Family AT5G54650 50.6 3.9e-103 373.6
Cma02g00531 . 34 903 FH2 protein (formin) Gene Family AT5G67470 56.5 4.0e-225 778.9
Cma19g00185 . 608 1071 FH2 protein (formin) Gene Family AT5G67470 59.1 5.1e-135 479.6
Cma02g01659 . 603 1066 FH2 protein (formin) Gene Family AT5G67470 57.9 7.6e-131 465.7
Cma04g01882 . 466 886 FH2 protein (formin) Gene Family AT5G67470 61.1 1.7e-127 454.5
Cma11g01134 CST 381 779 FH2 protein (formin) Gene Family AT5G67470 51.5 5.1e-103 373.2
Cma04g00306 . 353 829 FH2 protein (formin) Gene Family AT1G59910 51.5 3.2e-124 443.7
Cma19g00185 . 650 1030 FH2 protein (formin) Gene Family AT5G48360 52.5 6.0e-100 362.8
Cma02g01659 . 644 1025 FH2 protein (formin) Gene Family AT5G48360 52.1 6.0e-100 362.8
Cma02g00531 . 486 861 FH2 protein (formin) Gene Family AT5G48360 50.3 8.7e-91 332.4
Cma11g01134 CST 171 779 FH2 protein (formin) Gene Family AT3G05470 57.3 5.0e-159 559.3
Cma01g01155 CST 509 923 FH2 protein (formin) Gene Family AT3G05470 50.1 6.4e-106 382.9
Cma02g00531 . 466 860 FH2 protein (formin) Gene Family AT3G05470 51.6 1.4e-105 381.7
Cma09g00921 CST 504 914 FH2 protein (formin) Gene Family AT3G05470 50.1 1.7e-103 374.8
Cma02g01653 . 1 1193 FH2 protein (formin) Gene Family AT1G31810 65.9 0.0e+00 1220.7
Cma19g00192 . 1 1272 FH2 protein (formin) Gene Family AT1G31810 67.8 0.0e+00 1207.6
Cma10g00209 CCT,CST 1366 1687 FH2 protein (formin) Gene Family AT5G07650 75.5 1.9e-130 464.2
Cma11g00123 CCT,CST 1289 1610 FH2 protein (formin) Gene Family AT5G07650 73.0 1.3e-126 451.4
Cma13g01093 CCT 888 1198 FH2 protein (formin) Gene Family AT5G07650 71.1 1.2e-119 428.3
Cma01g00804 . 973 1298 FH2 protein (formin) Gene Family AT5G07650 66.0 5.1e-115 412.9
Cma02g01653 . 859 1190 FH2 protein (formin) Gene Family AT5G07650 61.1 2.2e-110 397.5
Cma09g00412 CCT 986 1308 FH2 protein (formin) Gene Family AT5G07650 63.5 7.2e-109 392.5
Cma19g00192 . 940 1271 FH2 protein (formin) Gene Family AT5G07650 59.9 2.7e-108 390.6
Cma10g00473 . 845 1164 FH2 protein (formin) Gene Family AT5G07650 61.4 3.0e-107 387.1
Cma11g00467 . 912 1231 FH2 protein (formin) Gene Family AT5G07650 61.7 2.6e-106 384.0
Cma01g01662 CCT 1073 1397 FH2 protein (formin) Gene Family AT5G07650 60.4 5.0e-102 369.8
Cma10g00209 CCT,CST 1291 1680 FH2 protein (formin) Gene Family AT5G07770 68.0 5.8e-140 495.4
Cma11g00123 CCT,CST 1216 1600 FH2 protein (formin) Gene Family AT5G07770 68.9 1.3e-139 494.2
Cma13g01093 CCT 797 1198 FH2 protein (formin) Gene Family AT5G07770 61.1 1.7e-126 450.7
Cma01g00804 . 896 1298 FH2 protein (formin) Gene Family AT5G07770 59.7 1.7e-123 440.7
Cma09g00412 CCT 917 1307 FH2 protein (formin) Gene Family AT5G07770 59.5 1.7e-118 424.1
Cma02g01653 . 795 1184 FH2 protein (formin) Gene Family AT5G07770 56.8 1.1e-117 421.4
Cma19g00192 . 876 1265 FH2 protein (formin) Gene Family AT5G07770 56.0 1.3e-115 414.5
Cma10g00473 . 768 1156 FH2 protein (formin) Gene Family AT5G07770 56.5 1.1e-114 411.4
Cma11g00467 . 835 1223 FH2 protein (formin) Gene Family AT5G07770 56.4 9.4e-114 408.3
Cma01g01662 CCT 1010 1389 FH2 protein (formin) Gene Family AT5G07770 57.1 4.4e-111 399.4
Cma09g00412 CCT 891 1315 FH2 protein (formin) Gene Family AT3G32400 74.1 1.6e-170 596.7
Cma01g01662 CCT 985 1399 FH2 protein (formin) Gene Family AT3G32400 70.4 1.8e-158 556.6
Cma11g00467 . 806 1232 FH2 protein (formin) Gene Family AT3G32400 65.0 4.2e-147 518.8
Cma10g00473 . 753 1165 FH2 protein (formin) Gene Family AT3G32400 64.3 1.3e-143 507.3
Cma10g00209 CCT,CST 1291 1687 FH2 protein (formin) Gene Family AT3G32400 66.0 3.1e-142 502.7
Cma02g01653 . 795 1189 FH2 protein (formin) Gene Family AT3G32400 66.2 2.6e-141 499.6
Cma11g00123 CCT,CST 1203 1610 FH2 protein (formin) Gene Family AT3G32400 63.5 1.9e-139 493.4
Cma19g00192 . 876 1270 FH2 protein (formin) Gene Family AT3G32400 65.2 3.2e-139 492.7
Cma13g01093 CCT 782 1201 FH2 protein (formin) Gene Family AT3G32400 57.2 1.9e-128 456.8
Cma01g00804 . 867 1304 FH2 protein (formin) Gene Family AT3G32400 54.9 9.0e-126 448.0
Cma09g00412 CCT 1 1315 FH2 protein (formin) Gene Family AT2G25050 54.7 0.0e+00 1172.1
Cma01g01662 CCT 31 1399 FH2 protein (formin) Gene Family AT2G25050 51.8 0.0e+00 1094.3
Cma11g00467 . 1 1232 FH2 protein (formin) Gene Family AT2G25050 53.0 9.7e-296 1013.8
Cma10g00473 . 1 1165 FH2 protein (formin) Gene Family AT2G25050 53.8 1.3e-295 1013.4
Cma10g00209 CCT,CST 1292 1687 FH2 protein (formin) Gene Family AT5G07780 62.7 3.0e-123 439.5
Cma11g00123 CCT,CST 1217 1610 FH2 protein (formin) Gene Family AT5G07780 61.3 1.4e-120 430.6
Cma13g01093 CCT 812 1201 FH2 protein (formin) Gene Family AT5G07780 57.4 1.3e-110 397.5
Cma01g00804 . 897 1304 FH2 protein (formin) Gene Family AT5G07780 53.7 2.0e-106 383.6
Cma02g01653 . 796 1185 FH2 protein (formin) Gene Family AT5G07780 53.0 2.6e-103 373.2
Cma09g00412 CCT 918 1308 FH2 protein (formin) Gene Family AT5G07780 54.0 1.3e-102 370.9
Cma19g00192 . 877 1266 FH2 protein (formin) Gene Family AT5G07780 52.5 6.5e-102 368.6
Cma10g00473 . 775 1156 FH2 protein (formin) Gene Family AT5G07780 53.0 1.4e-99 360.9
Cma11g00467 . 842 1231 FH2 protein (formin) Gene Family AT5G07780 53.3 5.2e-99 359.0
Cma01g01662 CCT 1011 1390 FH2 protein (formin) Gene Family AT5G07780 52.6 4.8e-97 352.4
Cma11g00123 CCT,CST 1 1619 FH2 protein (formin) Gene Family AT5G07740 62.6 0.0e+00 1103.6
Cma10g00209 CCT,CST 1 1696 FH2 protein (formin) Gene Family AT5G07740 62.1 0.0e+00 1092.8
Cma10g00209 CCT,CST 1365 1694 FH2 protein (formin) Gene Family AT5G07760 74.7 5.2e-129 459.5
Cma11g00123 CCT,CST 1288 1617 FH2 protein (formin) Gene Family AT5G07760 72.0 1.7e-124 444.5
Cma13g01093 CCT 887 1201 FH2 protein (formin) Gene Family AT5G07760 69.3 5.1e-116 416.4
Cma01g00804 . 972 1304 FH2 protein (formin) Gene Family AT5G07760 65.6 1.8e-113 407.9
Cma09g00412 CCT 992 1323 FH2 protein (formin) Gene Family AT5G07760 63.5 7.9e-109 392.5
Cma02g01653 . 869 1190 FH2 protein (formin) Gene Family AT5G07760 62.5 1.3e-108 391.7
Cma10g00473 . 844 1163 FH2 protein (formin) Gene Family AT5G07760 63.0 1.1e-107 388.7
Cma11g00467 . 911 1231 FH2 protein (formin) Gene Family AT5G07760 63.8 3.3e-107 387.1
Cma19g00192 . 950 1271 FH2 protein (formin) Gene Family AT5G07760 61.0 1.1e-105 382.1
Cma01g01662 CCT 1085 1397 FH2 protein (formin) Gene Family AT5G07760 61.8 3.0e-100 364.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007048 1 1 1 2 2 1 1 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00306 Cma_Chr04 FPKM 7.021331 7.331559 0.163479 0.351662 1.047082 1.061448 1.22154 0.240987 0.263359 0.329519