Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00317 ATGAGTGGATGGGATAGGGTTGGATCGTCTAGTTCGAGATTGGGCCGTGGCAATTCTTCCATGCCTGAGAGGACCTCCTCTTCTAACACGGTTCGACTCGGCCGAGTCCAGCCACAGGCGCCTGGATATCGCACCATCTTCTGTAATGATCGCGACGCTAATCTCCTTATCAAATTCAAGGGGAATTCAGTTTCGACCACAAAGTACAACTTCTTCACGTTCTTTCCGAAAGGGTTGTTTGAACAGTTCAGGCGTGTGGCTAACCTATACTTTCTTACAATCTCAATCTTATCCACCACACCCATCAGTCCCGTGCATCCAATCACAAATGTTGTCCCTTTAAGTCTGGTTCTACTTGTTTCTCTCATTAAAGAAGCATTTGAGGACTGGAAACGATTCCAGAATGATATGGCAATTAATAATAATCTTGTAGATGTGCTGCAAGATCAAAAGTGGGAGAGCGTTCCTTGGAAAAAGTTGCAGGTTGGGGACATTGTTAGGATTCGGCAAGATGGATTCTTTCCTGCAGATCTTCTTTTCCTTGCTAGTACAAATCCAGATGGTGTCTGCTACATTGAGACTGCTAACCTGGATGGGGAGACAAATTTGAAAATTAGAAAGGCCCTGGAAAAGACATGGGATTACTTGACTCCAGAGAAGGCATCTGAATTTAAAGGTGAAGTACAATGCGAGCAACCAAACAATTCACTCTACACTTTCACTGGCAATGTTATTATTCAGAAGCAAACATTACCTCTCAGCCCAAACCAACTTTTGTTGCGAGGATGCAGTCTCAGGAACACGGAATATATTGTGGGGGCTGTTATTTTTACAGGCCATGAAACAAAGGTTATGATGAATGCTATGAATGTTCCCTCCAAAAGAAGTACACTGGAGAAAAAACTTGACAAACTTATTCTTACGCTTTTTGCTACTCTCTTTATCATGTGTTTGATTGGAGCAATTGGCAGTGGCGTGTTTGTAAACAAAAAGTACTACTACTTAGCTCTTGATAAGGGAGGGGAAAATCAATTTAACCCTAGCAACCGATTCCTGGTTGTCATTCTGACCATGTTTACCCTTATTACTCTGTATTCAACCATCATTCCTATTTCTCTTTATGTTTCCATTGAGATGATAAAATTTATTCAATCGACACAATATATCAATAAGGATCTAAATATGTTCCATGCTGATAGCAATACCCCTGCATTGGCTAGAACTTCCAATCTGAATGAAGAACTGGGGCAGGTAGAGTACATCTTTTCAGATAAAACTGGTACTCTTACCAGGAATCTAATGGAGTTCTTTAAGTGTTCAATCGGTGGAGAGATATATGGCACTGGTGTCACTGAAATAGAGAGAGGAATTGCTGAGCAGAATGGCTTGAAAGTGGAAGAGGAGCACAAATCAGCCAATGCTGTACAGGAAAAGGGATTTAATTTTGATGATGCTAGGCTTATGAGAGGAGCATGGAGAAATGAACCCAGCTCTGATCTCTGTAAGGAATTTTTCAGATGCCTTGCTATTTGCCATACTGTACTCCCTGAGGGCGATGAATCCCCTGAAAAGATCACATATCAAGCAGCATCACCTGATGAGGCTGCGTTGGTAACTGCTGCTAAAAACTTTGGCTTCTTCTTTTACAGGCGTACACCTACTACAATATATGTTCGTGAATCTCATGTTGAAAAGATGGGTAAAATTCTAGATGTTTCTTATGAAATTCTCAATGTACTTGAGTTCAATAGTGTAAGGAAGCGTCAGTCTGTGGTGTGTCGTTATTCTGATGGTAGGCTTGTCTTGTACTGCAAGGGTGCTGATACTGTTATATATGAGAGATTGGCTGGTGGAAATGATGATCTGAAGAATATAACTAGGGAACACTTGGAGAAATTTGGATCGTCCGGTTTGAGAACTCTATGTCTTGCTTATAGAGACTTGCATCCCGACATGTATGAAACCTGGAATGAGAAATTCATTCAAGCTAAGTCTTCATTAAGAGATCGTGAAAAGAAATTGGATGAGGTTGCAGAACTTATAGAGAAAGACCTTATTTTGATTGGCTGTACTGCTATCGAAGATAAGCTTCAAGAAGGAGTACCAAACTGTATACAGACACTTTCTAGAGCCGGTATCAAGATTTGGATGCTAACGGGAGACAAGATGGAAACTGCTATAAATATAGCTTATGCTTGCAATTTAATAAACAATGAAATGAAACAATTTATTATCAGTTCAGAAACAGATGCAATCAGAGAAGTTGAAAACAGGGGTGACCAAGTAGAGCTTGCACGTTTTACTAGAGAAGAAGTAAAAAAGGAATTGAAGAAATGTCTTGAGGAAGCGCAGCAGTGTTTACAATCTACGTCTCCACCAAAATTAGCACTTGTTATAGATGGAAAATGTTTGATGTATGCATTAGATCCAAGTCTGCGAGTTACGTTACTAAATTTGAGCTTGAATTGTAGTTCGGTTGTTTGCTGCCGGGTTTCTCCTTTGCAGAAAGCGCAGGTGACAAGTCTGGTGAAGAAAGGTGCAAAGAAAATAACACTTAGTATTGGTGATGGTGCTAATGATGTTAGTATGATTCAAGCAGCTCATGTGGGCATTGGAATAAGTGGGCAGGAGGGAATGCAAGCTGTGATGGCTAGTGATTTTGCTATTGCCCAGTTTCGCTTTCTCACAGATTTACTTCTTGTACATGGACGATGGTCATATCTTAGAATCTGCAAGGTTGTCACATACTTCTTTTACAAGAATCTTACGTTCACTTTAACTCAGTTTTGGTTCACCTTTCAAACTGGATTTTCTGGTCAAAGATTCTATGATGATTGGTTCCAGTCATTGTATAATGTCATATTTACGGCCCTACCTGTAATAATGGTCGGACTATTTGACAAGGATGTTAGTGCGGCCTTATCTAAAAAGTACCCCGAGCTCTACAGAGAGGGAATAAGAAATGTGTTTTTCAAGTGGAGAGTTGTAACAACTTGGGCCATCTTTTCCGTCTACCAATCTTTAGTCTTTTATTATTTTGTAACCGCTTCCAGTTCCAGCAGTCAATCGGCATCTGGCAAGGTGTTTGGTCTATGGGATATCAGCACGATGACTTTCACATGCATTGTAGTGACTGTGAATTTGCGGCTGCTTATGATCTGCAATTCAATTACTAGGTGGCATTACATTACGGTTGGGGGAAGCATTTTAGCATGGTTCATGTTTATTTTGCTATATTCTGGTATTATGACACCACATGATAGGCAGGAAAATGTATATTTCGTCATATATGTCTTAATGAGCACACTCTATTTTTACATAGCTGTCCTCCTTGTCCCTGTCGTTGCGCTTCTTTGTGATTTTGCTTACCAAGGCATTCAGAGATGGTTTTTCCCCTATGATTATCAGATAGTTCAAGAAATTCATAGGCATGAACCTGATGGTAGAAGTGCGGTAGGATTGTTGGAGATTCAGAACCATCTTACACCGGAAGAGGCAAGAAGCTATGCCATGTCTCAACTCCCGCGGGAGTTATCGAAGCACACTGGCTTTGCTTTCGATTCACCTGGCTATGAGTCATTTTTTGCTGCACAGCTTGGTATTTATGCCCCACAGAAGGCATGGGATGTTGCCAGGAGAGCCAGTGTGAAGTCAAGACTAAAGATTAGGGAAAAGAAATGA 3681 40.72 MSGWDRVGSSSSRLGRGNSSMPERTSSSNTVRLGRVQPQAPGYRTIFCNDRDANLLIKFKGNSVSTTKYNFFTFFPKGLFEQFRRVANLYFLTISILSTTPISPVHPITNVVPLSLVLLVSLIKEAFEDWKRFQNDMAINNNLVDVLQDQKWESVPWKKLQVGDIVRIRQDGFFPADLLFLASTNPDGVCYIETANLDGETNLKIRKALEKTWDYLTPEKASEFKGEVQCEQPNNSLYTFTGNVIIQKQTLPLSPNQLLLRGCSLRNTEYIVGAVIFTGHETKVMMNAMNVPSKRSTLEKKLDKLILTLFATLFIMCLIGAIGSGVFVNKKYYYLALDKGGENQFNPSNRFLVVILTMFTLITLYSTIIPISLYVSIEMIKFIQSTQYINKDLNMFHADSNTPALARTSNLNEELGQVEYIFSDKTGTLTRNLMEFFKCSIGGEIYGTGVTEIERGIAEQNGLKVEEEHKSANAVQEKGFNFDDARLMRGAWRNEPSSDLCKEFFRCLAICHTVLPEGDESPEKITYQAASPDEAALVTAAKNFGFFFYRRTPTTIYVRESHVEKMGKILDVSYEILNVLEFNSVRKRQSVVCRYSDGRLVLYCKGADTVIYERLAGGNDDLKNITREHLEKFGSSGLRTLCLAYRDLHPDMYETWNEKFIQAKSSLRDREKKLDEVAELIEKDLILIGCTAIEDKLQEGVPNCIQTLSRAGIKIWMLTGDKMETAINIAYACNLINNEMKQFIISSETDAIREVENRGDQVELARFTREEVKKELKKCLEEAQQCLQSTSPPKLALVIDGKCLMYALDPSLRVTLLNLSLNCSSVVCCRVSPLQKAQVTSLVKKGAKKITLSIGDGANDVSMIQAAHVGIGISGQEGMQAVMASDFAIAQFRFLTDLLLVHGRWSYLRICKVVTYFFYKNLTFTLTQFWFTFQTGFSGQRFYDDWFQSLYNVIFTALPVIMVGLFDKDVSAALSKKYPELYREGIRNVFFKWRVVTTWAIFSVYQSLVFYYFVTASSSSSQSASGKVFGLWDISTMTFTCIVVTVNLRLLMICNSITRWHYITVGGSILAWFMFILLYSGIMTPHDRQENVYFVIYVLMSTLYFYIAVLLVPVVALLCDFAYQGIQRWFFPYDYQIVQEIHRHEPDGRSAVGLLEIQNHLTPEEARSYAMSQLPRELSKHTGFAFDSPGYESFFAAQLGIYAPQKAWDVARRASVKSRLKIREKK 1226
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1554381 1567703 - CmaCh04G003170.1 Cma04g00317 291398
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00317 1226 ProSitePatterns E1-E2 ATPases phosphorylation site. 424 430 IPR018303 -
Cma04g00317 1226 Pfam Phospholipid-translocating ATPase N-terminal 46 110 IPR032631 -
Cma04g00317 1226 PRINTS P-type cation-transporting ATPase superfamily signature 422 436 - -
Cma04g00317 1226 PRINTS P-type cation-transporting ATPase superfamily signature 854 873 - -
Cma04g00317 1226 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 19 1222 - -
Cma04g00317 1226 Coils Coil 769 789 - -
Cma04g00317 1226 Pfam Cation transport ATPase (P-type) 520 614 - -
Cma04g00317 1226 Gene3D - 688 894 IPR023214 -
Cma04g00317 1226 Gene3D - 124 289 - -
Cma04g00317 1226 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 827 933 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cma04g00317 1226 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1132 IPR023298 -
Cma04g00317 1226 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 59 1140 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Cma04g00317 1226 SFLD p-type atpase 404 905 IPR044492 -
Cma04g00317 1226 CDD P-type_ATPase_APLT_Dnf-like 61 1014 - -
Cma04g00317 1226 Pfam Phospholipid-translocating P-type ATPase C-terminal 882 1132 IPR032630 -
Cma04g00317 1226 Gene3D - 534 687 IPR023299 GO:0000166
Cma04g00317 1226 SFLD C1.7: P-type atpase like 404 905 - -
Cma04g00317 1226 SUPERFAMILY HAD-like 410 897 IPR036412 -
Cma04g00317 1226 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 19 1222 - -
Cma04g00317 1226 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 429 693 IPR023299 GO:0000166
Cma04g00317 1226 SUPERFAMILY Calcium ATPase, transduction domain A 141 285 IPR008250 -
Cma04g00317 1226 Pfam E1-E2 ATPase 142 375 - -
Cma04g00317 1226 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00317 Cma-Chr4:1554381 Cma13g01049 Cma-Chr13:7987560 0 dispersed
Cma04g00317 Cma-Chr4:1554381 Cma04g01611 Cma-Chr4:8128274 0 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00317 K14802 - csv:101207069 2296.93