Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cma04g00323 | ATGGCAAATGATGAGGACGTGAAGCTTGTGGGTCTCTGGACTAGTCCATTTGTTATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGACTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACACTGTTCACAAGAAGATCCCTGTTCTCATTCACGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGAAGTCTGGTCCTCCGCTCCGTCCATCCTTCCCTCCGCTCCTTACGATCGCGCCCTAAATCGATTCTGGGCTTCCAAAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACTCTGAGCAGAGGGAAGGCGTTCTTGGGCGGAGACCATATTGGAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA | 813 | 49.08 | MANDEDVKLVGLWTSPFVMRPRIALNIKSVHYDFIQETFGSKSPLLLQSNTVHKKIPVLIHAGKPIAESSIIVEYIDEVWSSAPSILPSAPYDRALNRFWASKRGGSDRVIGGSFRDSEQREGVLGRRPYWSSTSFPPSQIPLRITGRMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ | 270 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
4 | 1593757 | 1596902 | + | CmaCh04G003230.1 | Cma04g00323 | 291404 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cma04g00323 | 270 | Pfam | Ribosomal protein S10p/S20e | 172 | 266 | IPR027486 | - | |
Cma04g00323 | 270 | Gene3D | Ribosomal protein S10 domain | 155 | 269 | IPR036838 | - | |
Cma04g00323 | 270 | PANTHER | RIBOSOMAL PROTEIN S10-RELATED | 149 | 269 | - | - | |
Cma04g00323 | 270 | SUPERFAMILY | Ribosomal protein S10 | 170 | 267 | IPR036838 | - | |
Cma04g00323 | 270 | Gene3D | Glutaredoxin | 1 | 89 | - | - | |
Cma04g00323 | 270 | PRINTS | Ribosomal protein S10 family signature | 227 | 241 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00323 | 270 | PRINTS | Ribosomal protein S10 family signature | 205 | 220 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00323 | 270 | PRINTS | Ribosomal protein S10 family signature | 170 | 183 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00323 | 270 | ProSiteProfiles | Soluble glutathione S-transferase N-terminal domain profile. | 5 | 84 | IPR004045 | - | |
Cma04g00323 | 270 | TIGRFAM | uS10_euk_arch: ribosomal protein uS10 | 169 | 267 | IPR005729 | GO:0003735|GO:0006412|GO:0015935 | |
Cma04g00323 | 270 | Pfam | Glutathione S-transferase, N-terminal domain | 6 | 78 | IPR004045 | - | |
Cma04g00323 | 270 | PANTHER | 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER | 149 | 269 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00323 | 270 | CDD | GST_N_Tau | 7 | 80 | - | - | |
Cma04g00323 | 270 | ProSitePatterns | Ribosomal protein S10 signature. | 194 | 209 | IPR018268 | GO:0003723|GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00323 | 270 | SMART | Ribosomal_S10_2 | 172 | 266 | IPR027486 | - | |
Cma04g00323 | 270 | Hamap | 30S ribosomal protein S10 [rpsJ]. | 168 | 267 | IPR001848 | GO:0003735|GO:0005840|GO:0006412 | |
Cma04g00323 | 270 | SUPERFAMILY | Thioredoxin-like | 6 | 84 | IPR036249 | - |
Event-related genes

Select | Gene_1 | Gene_2 | Event_name |
---|---|---|---|
Cma02g01014 | Cma04g00323 | CCT | |
Cma04g00323 | Cma15g01385 | CCT |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cma02g01014 | Cma-Chr2:6020648 | Cma04g00323 | Cma-Chr4:1593757 | 5.48E-84 | dispersed | |
Cma04g00323 | Cma-Chr4:1593757 | Cma15g01385 | Cma-Chr15:8678411 | 3.84E-83 | dispersed | |
Cma09g00986 | Cma-Chr9:5026918 | Cma04g00323 | Cma-Chr4:1593757 | 2.51E-08 | dispersed | |
Cma04g00321 | Cma-Chr4:1587829 | Cma04g00323 | Cma-Chr4:1593757 | 1.19E-63 | proximal |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cma04g00323 | K02969 | - | csv:101209551 | 239.965 |