Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00323 ATGGCAAATGATGAGGACGTGAAGCTTGTGGGTCTCTGGACTAGTCCATTTGTTATGAGGCCCAGAATCGCCCTCAACATCAAATCCGTACACTACGACTTCATTCAAGAAACATTCGGATCCAAAAGCCCGCTTCTTCTCCAATCCAACACTGTTCACAAGAAGATCCCTGTTCTCATTCACGCCGGCAAACCCATCGCCGAATCCTCCATCATCGTTGAGTATATCGATGAAGTCTGGTCCTCCGCTCCGTCCATCCTTCCCTCCGCTCCTTACGATCGCGCCCTAAATCGATTCTGGGCTTCCAAAAGGGGTGGAAGCGATAGGGTTATTGGAGGAAGCTTTCGGGACTCTGAGCAGAGGGAAGGCGTTCTTGGGCGGAGACCATATTGGAGTTCAACTTCTTTCCCGCCATCCCAGATTCCTCTTCGGATAACAGGAAGAATGGCGTACGCAGCAATGAAACCAACTAAGCCAGGCTTAGAAGATACGCAAGAGCAAATCCATAAGATCAGGATTACTCTCTCCTCAAAAAATGTCAAGAACCTTGAGAAGGTTTGTGCCGACTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAAGGACCAGTAAGAATGCCCACTAAGGTTCTTCACATCACAACCAGAAAATCTCCATGTGGTGAAGGTACCAACACATGGGACAGATTCGAGCTTCGTGTCCACAAGCGAGTTATCGACCTATTCAGCTCTGCTGATGTAGTGAAGCAGATTACCTCCATCACCATCGAACCTGGTGTGGAGGTTGAGGTCACCATTGCCGATCAATGA 813 49.08 MANDEDVKLVGLWTSPFVMRPRIALNIKSVHYDFIQETFGSKSPLLLQSNTVHKKIPVLIHAGKPIAESSIIVEYIDEVWSSAPSILPSAPYDRALNRFWASKRGGSDRVIGGSFRDSEQREGVLGRRPYWSSTSFPPSQIPLRITGRMAYAAMKPTKPGLEDTQEQIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSADVVKQITSITIEPGVEVEVTIADQ 270
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1593757 1596902 + CmaCh04G003230.1 Cma04g00323 291404
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00323 270 Pfam Ribosomal protein S10p/S20e 172 266 IPR027486 -
Cma04g00323 270 Gene3D Ribosomal protein S10 domain 155 269 IPR036838 -
Cma04g00323 270 PANTHER RIBOSOMAL PROTEIN S10-RELATED 149 269 - -
Cma04g00323 270 SUPERFAMILY Ribosomal protein S10 170 267 IPR036838 -
Cma04g00323 270 Gene3D Glutaredoxin 1 89 - -
Cma04g00323 270 PRINTS Ribosomal protein S10 family signature 227 241 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma04g00323 270 PRINTS Ribosomal protein S10 family signature 205 220 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma04g00323 270 PRINTS Ribosomal protein S10 family signature 170 183 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma04g00323 270 ProSiteProfiles Soluble glutathione S-transferase N-terminal domain profile. 5 84 IPR004045 -
Cma04g00323 270 TIGRFAM uS10_euk_arch: ribosomal protein uS10 169 267 IPR005729 GO:0003735|GO:0006412|GO:0015935
Cma04g00323 270 Pfam Glutathione S-transferase, N-terminal domain 6 78 IPR004045 -
Cma04g00323 270 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 149 269 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma04g00323 270 CDD GST_N_Tau 7 80 - -
Cma04g00323 270 ProSitePatterns Ribosomal protein S10 signature. 194 209 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Cma04g00323 270 SMART Ribosomal_S10_2 172 266 IPR027486 -
Cma04g00323 270 Hamap 30S ribosomal protein S10 [rpsJ]. 168 267 IPR001848 GO:0003735|GO:0005840|GO:0006412
Cma04g00323 270 SUPERFAMILY Thioredoxin-like 6 84 IPR036249 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g01014 Cma04g00323 CCT
Cma04g00323 Cma15g01385 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01014 Cma-Chr2:6020648 Cma04g00323 Cma-Chr4:1593757 5.48E-84 dispersed
Cma04g00323 Cma-Chr4:1593757 Cma15g01385 Cma-Chr15:8678411 3.84E-83 dispersed
Cma09g00986 Cma-Chr9:5026918 Cma04g00323 Cma-Chr4:1593757 2.51E-08 dispersed
Cma04g00321 Cma-Chr4:1587829 Cma04g00323 Cma-Chr4:1593757 1.19E-63 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00323 K02969 - csv:101209551 239.965