Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00334 ATGTCATCCCAATTTGCTCTTCTTCCCTATATAACTAAGCCTCTGAGAGCTACCTTAGCCCTCATCAATACCTACAACGAATTGGGTCTTTCAATGGAGAGGAGTATTCTTGGGGTGTTGTTTTTTCTTCACTTCTTTTTACCGTCTTCTTCAGCCTTCTCCAAGCATGCCTCTAATGGCATTCATTGGTGGTGCACAAAAACCACGTACCCTGAAACCTGCAAGTATTTCTATGGCAATGCCAACAATCCTCCTCCCAAAGACATGTCTGAGTTCAAGAAAATGGCGATCAAATTCGCCATGGATGGAGCTTTGAGTGTCGAGAGGCACACTAAGAGAGTCGGTTCAAGGTGTCGAAATCATAAGGAAAGGGTTGCTTGGGCTGATTGCTTGAAGCTCTACCAAAACACCATCTTTCAGCTCAAACGCACTCTAGAGTCCTCTACTAAATCTACTGAATTTGATATCCAAACCTGGCTTAGTACCGCCCTTACCAACGTTGAAACGTGCCGCACTGGGTTTGCTGAGCTGAATGTTGTGGACAATGTATTGCCGCTGATCACATCCAAGAATGTCACAAAGCTGATAAGCAATAGCTTGGCGGTTAACAATGCTTCAACTTGGCAGGGGAAAGAGACATATAAACAGGGTTTTCCAAGTTGGCTTTCAGGTGGTGATAGGAAGCTGCTGCAGTCATCTTCAATGATGGTGGACCTTGTGGTGGCACAGGATGGATCCGGTGACCATAAGACAGTTGCAGCAGCACTAGAGGAAGCTGCAAAAAGGAATACAGATGGGAGATTCGTTATACAAGTAAAGAGAGGGGTTTATGAAGAAAACCTCGAGATAGGAAATAAGATGAAGAATATAATGCTAGTCGGAGATGGAATGAGATTTACCTTTATTACAAGTAGTAGAAGTGTTGGAGGAGGCTCCACCACTTTCAATTCTGCAACCGTTGCGGTGACCGGAGAAGGATTTATAGCTCAAGGCATCACATTCCGAAACACGGCCGGTCCCGAAAACCATCAAGCAGTTGCTCTCCGGTCCGGTGCAGATCATTCCGTCTTCTACCGCTGTGCCTTTGAAGGGTATCAGGACACCCTCTATGTGCATTCACAGAGACAATTCTATAAAGAGTGCTACATTTATGGGACTGTAGATTTCATATTCGGAAACGCTGCAGTGGTTCTACAGAACTGCATGATTTACGCAAGGAAACCAATGAATGGTCAAAAGAATGCAATTACTGCTCAAGGAAGGACTGATCCAAATCAAAATACAGGCATTTCAATCCACAACTCAAGGGTCATGGCCACAGATGACCTGAAACAAGTGGAGGGCACAGTGAAAACCTTCTTGGGAAGGCCGTGGAAGGAGTACTCTCGAACAGTTTTCATTAAAACTTACCTCGATAGTTTGGTTGATCCAGCAGGTTGGTTGGAATGGAATGGTGATTTTGCATTGAACACTTTATACTATGGAGAGTATAAGAACATTGGTCCTCGTTCATCAACAGACCAGAGAGTGCAGTGGAAAGGTTACCATGTTATAAGCAATTCAACAGAGGCATCGGAGTTCTCTGTCCAAAATTTCATTTCAGGGCAGTCATGGCTGCCAGGCACAGAGGTCCCATTCATTCCTGGAATCTAG 1653 44.65 MSSQFALLPYITKPLRATLALINTYNELGLSMERSILGVLFFLHFFLPSSSAFSKHASNGIHWWCTKTTYPETCKYFYGNANNPPPKDMSEFKKMAIKFAMDGALSVERHTKRVGSRCRNHKERVAWADCLKLYQNTIFQLKRTLESSTKSTEFDIQTWLSTALTNVETCRTGFAELNVVDNVLPLITSKNVTKLISNSLAVNNASTWQGKETYKQGFPSWLSGGDRKLLQSSSMMVDLVVAQDGSGDHKTVAAALEEAAKRNTDGRFVIQVKRGVYEENLEIGNKMKNIMLVGDGMRFTFITSSRSVGGGSTTFNSATVAVTGEGFIAQGITFRNTAGPENHQAVALRSGADHSVFYRCAFEGYQDTLYVHSQRQFYKECYIYGTVDFIFGNAAVVLQNCMIYARKPMNGQKNAITAQGRTDPNQNTGISIHNSRVMATDDLKQVEGTVKTFLGRPWKEYSRTVFIKTYLDSLVDPAGWLEWNGDFALNTLYYGEYKNIGPRSSTDQRVQWKGYHVISNSTEASEFSVQNFISGQSWLPGTEVPFIPGI 550
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1639073 1641126 + CmaCh04G003340.1 Cma04g00334 291415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00334 550 Gene3D - 232 550 IPR012334 -
Cma04g00334 550 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 59 204 IPR035513 -
Cma04g00334 550 SUPERFAMILY Pectin lyase-like 238 549 IPR011050 -
Cma04g00334 550 SMART PMEI_2 56 202 IPR006501 GO:0004857
Cma04g00334 550 ProSitePatterns Pectinesterase signature 2. 383 392 IPR033131 -
Cma04g00334 550 TIGRFAM PME_inhib: pectinesterase inhibitor domain 35 204 IPR006501 GO:0004857
Cma04g00334 550 PANTHER PECTINESTERASE 38 549 - -
Cma04g00334 550 CDD PMEI-like_3 63 205 - -
Cma04g00334 550 Pfam Plant invertase/pectin methylesterase inhibitor 61 201 IPR006501 GO:0004857
Cma04g00334 550 Pfam Pectinesterase 238 535 IPR000070 GO:0030599|GO:0042545
Cma04g00334 550 PANTHER PECTINESTERASE 38 549 - -
Cma04g00334 550 Gene3D Invertase/pectin methylesterase inhibitor family protein 56 205 IPR035513 -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma02g00988 Cma04g00334 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00988 Cma-Chr2:5875752 Cma04g00334 Cma-Chr4:1639073 0 dispersed
Cma04g00334 Cma-Chr4:1639073 Cma16g00836 Cma-Chr16:4743264 0 dispersed
Cma14g00914 Cma-Chr14:4742703 Cma04g00334 Cma-Chr4:1639073 8.22E-06 dispersed
Cma15g00966 Cma-Chr15:5368498 Cma04g00334 Cma-Chr4:1639073 4.29E-111 dispersed
Cma20g01066 Cma-Chr20:8035512 Cma04g00334 Cma-Chr4:1639073 1.29E-107 dispersed
Cma04g00334 Cma-Chr4:1639073 Cma14g01967 Cma-Chr14:13840381 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00334 K01051 - csv:101211449 888.641