Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00349 ATGAAAACAGCTTCCAGTTTCCTGTTCTTGATCTCTGCTGTTCTTTTGATCATCGTCTCTTTTCTTCTTTCTGCAACTTCTTCAACTCCAACAGTTTTGCCCCTTCAACTTCTCTCTCTGCTTTCCCTCAAATCCTCCATTAAAGACTCCTCTTCGAGCTTTCATGATTGGGACCCTAAACCCACCTTCTCCAAAGCTGATTTTCATGACCCGATTTGGTGCTCTTGGTCTGGAGTTCGATGTGATCAGAACTCACCGGAAATTACCTCCTTGGATTTGTCTCGTCGGAATCTCACTGGGTTTATTCCCTCTGAAATTAAGTACTTAACGAGCTTAGTTTATTTGAATTTGAGTGGTAATAGCTTTCTTGGGCCGTTCCCCACCGCCATTTTTGAGCTCACTCAGCTTACGACTCTTGATATTAGTCATAATATCTTCACCTCCACTTTCCCACCTGGGATTTCCAAGCTTAAGTTCTTGAACGTTTTCGATGCCTACAGTAACAACTTCACTGGTCCATTACCGCAAGAATTCGCACATCTCCGGTTCCTCGAATGGCTCAACCTCGGTGGAAGCTACTTTAATGGCAGTATTCCGGCGAGTTATGGCGGTTTGTCACGGTTGAAGTATTTGCATTTGGCTGGAAATGCTCTTGATGGTCAAATTCCAGGGCAATTAGCGTATTTAATCAAACTCGAGAGAATGGAAATCGGTTACAATACCTTCTCCGGCGGGATTCCGGCGGAATTTCCATTGTTGTTGAATCTGAAATACTTGGATATTGCCGGAGCGAATCTCGCCGGGACTCTGCCGCAGGACATTGGAAACATGACGAAGCTGCAAAATCTGCTTCTCTTCAAAAATCGAATCACCGGCGAAATTCCTGAAAGTTTAGGGAAATTAGAAGCGCTTGAGGAGCTTGATTTTTCGGAGAATCGACTAACCGGAACGATTCCGTCGGATTTGTATAATCTGAAGGAATTAAGAGAGCTGAGTTTGATGGCGAACGATCTGAGTGGGGAAATTCCACAAGCACTTGGCGATCTTCCAAATCTCGCCAGTTTGCGATTATGGAACAATTTGCTCACAGGTCCACTGCCTCAGAATCTCGGCTCGAACGAGAAGTTACTGCAAGTCGACGTGTCGTCGAATCAACTCTCCGGTCCGATTCCTCCAAATCTCTGCCATGGAAACAAGCTGTACAAGCTCATTCTGTTTTCCAACAAATTAGGGCACGAACTTCCCGCCTCTTTAACGAACTGCACGTCTCTCGTTCGTCTTCGAATCCAAAACAACTTCCTTAACGGCTCGATTCCTCACGGTTTCGGCATGTTGGAGAATCTGACATTCGCCGATTTCAGTAACAATAACTTCGCCGGCGAGATTCCGGCGGATTTTGGTAATGCGGTAAAGTTACAGTACTTGAACATTTCACAGAACGCCTTCGGAACTTCCTTACCGGAGAATATCTGGAACTCGACTAGCTTACAGATCTTCTCGGCGAGTTCTTCGAGAATCATCGGTAGCATCCCCGATTTCGTCGGGTGTAGATCTATCTACGAGATCGAACTCCAGGACAATAATTTAAACAGTAGTATTCCATGGACGTTCGGCCATTGCGAGAAGCTACTCACGCTGAATTTAAGCAGGAATTCGTTAACCGGCATTATTCCATGGGAGATTTCCACGCTGCCGTCGATTACCGCCATTGATCTGTCACGAAACTTCCTCACAGGTACAATCCCTTCAAATTTCCAAAACTGTAGCACAATCGAAAGCTTCGACGTATCATACAACCAGCTCACCGGCCCCATTCCATCGACCGGAACAATCTTCCCGGGATTACACTCTTCTTCATTCATCGGCAACGACGGTCTCTGCGGCGAGATTCTAGCAAAACCCTGCGCTGTCGACGCGCTCTCCGATGGCGGGATAGAGGTCCGACAGCAGCAGCCACGGCGGACGACGGGAGCAATCGTGTGGATAATGGCAGCGGCGTTTGGAATCGGACTGTTCGTATTAGTAGCCGGGACGAGATGTTTTCAGGCGAATTACAGCCGTCGATTCGGCGATGGCGACGAGGAAACGGGACCATGGAAACTAACCGCCTTTCAACGGTTGAACTTCACGGCGGAGGACGTGTTAGAGTGTATGTCAATGACGGATAAGATCCTGGGAATGGGGTCCACTGGGACGGTATATAAAGCGGAGATGCCAGGTGGCGAAATCATAGCGGTGAAGAAATTGTGGGGTAAATATAAAGAGAACATCCGACGGCGGAGAGGGGTTCTGGCGGAAGTGGAGGTACTGGGGAACGTGAGGCACAGGAACATAGTGAGATTGTTAGGGTGCTGCAGCAACAAGGAGTGTACGATGCTGCTCTACGAGTATATGCCAAATGGTAATTTGGACGATTTACTGCACGGTAAAAACAAGGGTGAAAATTTGGTGGCCGACTGGATAACTAGGTATAAAATTGCACTGGGTGTGGCACAGGGGATTTGTTATCTTCACCATGACTGTGATCCAGTCATCGTGCACCGCGATTTGAAGCCCAGTAATATTTTATTGGACGGTGAGATGGAGGCCCGAGTGGCGGATTTTGGCGTCGCTAAGTTGATCCAGACCGATGAGTCAATGTCGGTGATCGCTGGATCCTACGGCTACATTGCACCAGAATATGGCTACACGCTTCAAGTGGATGAAAAAAGTGATATTTATAGCTTTGGAGTTGTGTTGATGGAGATCGTGAGCGGGAAGAGGTCAGTGGATTCTGAATTTGGCGAGGGGAATAGCATTGTGGATTGGGTAAGATCCAAGATTAAGGTGAAAGATGGAGTGAATCAAGTTTTGGACAACGATGTCGGTGCGTCTTGTGCGTCTATTAGAGAAGAAATGATACAAATGCTTCGTATTTCATTGCTTTGTACGAGTCGTAACCCTGCAGACCGACCGTCGATGCGTGACGTTGTTTTGATGCTACAACAAACAAAACCCAAGAGAAAATTTACTGGGAACCTTGTCACTGTTGAAGCTACTGATCGCGCCACAAGCATTCGCACTCCAGTGGAAGAACAGAAGAGGGAAATACAAAGACCTTCCCGCCACAGAAACTTCATTCTCGTCCAGTTACAGAATAAGATTCCGCATATTTTCCCTTCTTCTCGCTTCAAAAATCTTCATTCTTCTTCACCAATACCGATCTTTACCCTTGCCCCTCCTCAAGGATCCGCAGAACCCCTAAAAAGCTTCAAAATGGCTGATTCCAGGGATCTTCCTCCTCGCCGCGGAGCAGGAATAGTCAAAAGTATACGGTTGGAGAACTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTCAATTTCATTACAGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGCCGAGCTAGAGGCACCCAAAGGGCGTCGACTTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAAATGGAAAATTCCGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATAGAGAGAAGGATTTCCGAAGCCTCAGGTGCCATTGTTTTGAAAGATTCTCAAGGAAAGAAGGTTTCCAGTCGGAGGGATGAACTACGAGAGCTTGTAGACCATTTTAATATAGATGTTGAGAACCCGTGTGTGATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTTTTCTTCAAAGCTACTCTTCTCCAGCAAGTTGATGATCTGTTGAAAAACATTTTTCATCAACTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAGCTAAATGAGCTGCAAGGAAAAATTAAAAACATGGAGCACGTAGAGGAAATCTATCAACAAGTCCAACAGTTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCTGGAGCAAAGTGTAAAAATAGGAAAGCTCAAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCACCAACAGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCGGAAGTTAGAAGACTGAAGGACGAATTGCAAGAAACCCTTTCCTTGGCAACAAGAGAGAAGCTCGGGCTTGAAGAGGAACATGGCCGCAAAATGAACTACATTCAAAAGATGGCAAAACGTGTTAGGCTGCTTGAGCAACAAGTTCACGATGTTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAACTGGAGACTGAAGCTGCTAAGTCAACAGTCATGAGGTTAAAGGAGGAGGAAAATGGCTTACTGGATAGTCTAAACAGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAAAAAAAGCATAATGAATTTTCACGCTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAAAATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACGTGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCATTCATCGTGACTGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCGCGTTTGACCAGCGGATCAAAAATCTCAAGGAGGTCTTTACATTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAAACAATTCTTCCCCCAGTTAAAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATACATCGAACATGAAGGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTCCGGGGTCTTGAAGAGAACCTAAGCAATGCCAAGCGGAGATGTCAAAACGCGGAACGCATTTTAATGTCCAAAAATTTGGAGCTACAAGATTTACGGAAGTCACAGGTTGCTGGAACTAGTTCATTACCTTCATCAAACGTTGACGAGCTTCATCAAGAAATTTCTAAAATCAAAGAGGAGGTAGAAGAGAATAAATCGCTTCTGGAAAAGTTTAGAGTGAGAATGAAAGAAGCGGAAGCCAAGGCAAAAGATATTAAAGTATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAGTTGATGCATATGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCCGCAGAAAAGGAGATGAATCATTATGAAGGTATTATGACTAACAAGGTCCTGTTTGATATCAAAGAGGCAGAGAGACAATATGAGGAGCTCGAGCGCCATCGCAAGGAGAGTTACAGTAAGGCTTCAATAATATCTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAAACAGGCTAAATCAGAGACTTAGTAACGAGACCCGACAATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGACTTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAACTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGTCAACTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAATCAATTACGAGGAAAAGACTCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTGTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGTCACAAGGTTCCCAATGGATATTTATCACACCTCATGATATCGGCGTGGTAAAACAAGGTGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 6414 44.12 MKTASSFLFLISAVLLIIVSFLLSATSSTPTVLPLQLLSLLSLKSSIKDSSSSFHDWDPKPTFSKADFHDPIWCSWSGVRCDQNSPEITSLDLSRRNLTGFIPSEIKYLTSLVYLNLSGNSFLGPFPTAIFELTQLTTLDISHNIFTSTFPPGISKLKFLNVFDAYSNNFTGPLPQEFAHLRFLEWLNLGGSYFNGSIPASYGGLSRLKYLHLAGNALDGQIPGQLAYLIKLERMEIGYNTFSGGIPAEFPLLLNLKYLDIAGANLAGTLPQDIGNMTKLQNLLLFKNRITGEIPESLGKLEALEELDFSENRLTGTIPSDLYNLKELRELSLMANDLSGEIPQALGDLPNLASLRLWNNLLTGPLPQNLGSNEKLLQVDVSSNQLSGPIPPNLCHGNKLYKLILFSNKLGHELPASLTNCTSLVRLRIQNNFLNGSIPHGFGMLENLTFADFSNNNFAGEIPADFGNAVKLQYLNISQNAFGTSLPENIWNSTSLQIFSASSSRIIGSIPDFVGCRSIYEIELQDNNLNSSIPWTFGHCEKLLTLNLSRNSLTGIIPWEISTLPSITAIDLSRNFLTGTIPSNFQNCSTIESFDVSYNQLTGPIPSTGTIFPGLHSSSFIGNDGLCGEILAKPCAVDALSDGGIEVRQQQPRRTTGAIVWIMAAAFGIGLFVLVAGTRCFQANYSRRFGDGDEETGPWKLTAFQRLNFTAEDVLECMSMTDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKYKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDLLHGKNKGENLVADWITRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYGYTLQVDEKSDIYSFGVVLMEIVSGKRSVDSEFGEGNSIVDWVRSKIKVKDGVNQVLDNDVGASCASIREEMIQMLRISLLCTSRNPADRPSMRDVVLMLQQTKPKRKFTGNLVTVEATDRATSIRTPVEEQKREIQRPSRHRNFILVQLQNKIPHIFPSSRFKNLHSSSPIPIFTLAPPQGSAEPLKSFKMADSRDLPPRRGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRARGTQRASTLKDFIKTGCSHAVIQVEMENSGEDAFKPGIYGNVIIIERRISEASGAIVLKDSQGKKVSSRRDELRELVDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFHQLRSANALVDDLESTIRPVEKELNELQGKIKNMEHVEEIYQQVQQLKKKLAWSWVYDVDKQLLEQSVKIGKLKDRIPICRAKIDHQQGLAEKLRERFIEKKAQIASMMEKTSEVRRLKDELQETLSLATREKLGLEEEHGRKMNYIQKMAKRVRLLEQQVHDVHEQHIRNTQAEESEIEEKLKELELETEAAKSTVMRLKEEENGLLDSLNSGRSEIKKIAEEIEGYEKKHNEFSRSIRELRQHQTNKVTAFGGDRVIQLLRVIERQNRRFKKPPIGPIGAHLNLVNGDVWAPAVENAIGRLLNAFIVTDHRDSLLLRGCANEANYRQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRIKNLKEVFTLDGYKMFSRGSVQTILPPVKRPRSGRLCSSFDDQIKSLEKDTSNMKEEAEQCRKRKRAAEEQLRGLEENLSNAKRRCQNAERILMSKNLELQDLRKSQVAGTSSLPSSNVDELHQEISKIKEEVEENKSLLEKFRVRMKEAEAKAKDIKVSFENLCESAKGEVDAYEEAERDMLQIERDLHSAEKEMNHYEGIMTNKVLFDIKEAERQYEELERHRKESYSKASIISPESEIEALGDWDGSTPEQLSAQLNRLNQRLSNETRQCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKINYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALSQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS 2137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1699886 1717501 - CmaCh04G003490.1 Cma04g00349 291430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00349 2137 Pfam RecF/RecN/SMC N terminal domain 1101 2127 IPR003395 -
Cma04g00349 2137 Coils Coil 1369 1417 - -
Cma04g00349 2137 Coils Coil 1720 1782 - -
Cma04g00349 2137 Coils Coil 1489 1523 - -
Cma04g00349 2137 CDD ABC_SMC6_euk 1101 1253 - -
Cma04g00349 2137 SUPERFAMILY L domain-like 322 627 - -
Cma04g00349 2137 Coils Coil 1880 1907 - -
Cma04g00349 2137 Coils Coil 1795 1836 - -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 515 637 IPR032675 -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 294 396 IPR032675 -
Cma04g00349 2137 Coils Coil 1851 1878 - -
Cma04g00349 2137 Coils Coil 1447 1481 - -
Cma04g00349 2137 CDD ABC_SMC6_euk 2015 2137 - -
Cma04g00349 2137 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 1014 - -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 191 293 IPR032675 -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 397 514 IPR032675 -
Cma04g00349 2137 Pfam Leucine rich repeat 518 575 IPR001611 GO:0005515
Cma04g00349 2137 Pfam Leucine rich repeat 86 144 IPR001611 GO:0005515
Cma04g00349 2137 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Cma04g00349 2137 Gene3D - 1713 1882 - -
Cma04g00349 2137 ProSiteProfiles Protein kinase domain profile. 719 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00349 2137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1100 1389 IPR027417 -
Cma04g00349 2137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1102 2122 IPR027417 -
Cma04g00349 2137 SMART serkin_6 719 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00349 2137 Gene3D Transferase(Phosphotransferase) domain 1 798 1014 - -
Cma04g00349 2137 Gene3D - 1883 2132 IPR027417 -
Cma04g00349 2137 ProSitePatterns Protein kinases ATP-binding region signature. 725 748 IPR017441 GO:0005524
Cma04g00349 2137 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00349 2137 Gene3D Phosphorylase Kinase; domain 1 696 797 - -
Cma04g00349 2137 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Cma04g00349 2137 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 6 1014 - -
Cma04g00349 2137 Coils Coil 1425 1445 - -
Cma04g00349 2137 Coils Coil 1288 1315 - -
Cma04g00349 2137 Gene3D - 1100 1347 IPR027417 -
Cma04g00349 2137 Pfam Leucine rich repeat N-terminal domain 36 82 IPR013210 -
Cma04g00349 2137 Coils Coil 1935 1973 - -
Cma04g00349 2137 SUPERFAMILY Protein kinase-like (PK-like) 722 995 IPR011009 -
Cma04g00349 2137 SUPERFAMILY L domain-like 66 408 - -
Cma04g00349 2137 SMART LRR_typ_2 133 157 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 349 373 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 205 229 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 301 325 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 564 587 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 470 493 IPR003591 -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01717 Cma-Chr2:9672648 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma04g00349 Cma-Chr4:1699886 Cma04g00900 Cma-Chr4:4686817 0 dispersed
Cma05g01249 Cma-Chr5:9596734 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma12g01168 Cma-Chr12:9214663 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma17g00970 Cma-Chr17:7195880 Cma04g00349 Cma-Chr4:1699886 3.76E-19 transposed
Cma16g00202 Cma-Chr16:912682 Cma04g00349 Cma-Chr4:1699886 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68461 PF02463 SMC_N 4.30E-23 CL0023 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00349 - K22804 csv:101208493 1837.77