Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00349 ATGAAAACAGCTTCCAGTTTCCTGTTCTTGATCTCTGCTGTTCTTTTGATCATCGTCTCTTTTCTTCTTTCTGCAACTTCTTCAACTCCAACAGTTTTGCCCCTTCAACTTCTCTCTCTGCTTTCCCTCAAATCCTCCATTAAAGACTCCTCTTCGAGCTTTCATGATTGGGACCCTAAACCCACCTTCTCCAAAGCTGATTTTCATGACCCGATTTGGTGCTCTTGGTCTGGAGTTCGATGTGATCAGAACTCACCGGAAATTACCTCCTTGGATTTGTCTCGTCGGAATCTCACTGGGTTTATTCCCTCTGAAATTAAGTACTTAACGAGCTTAGTTTATTTGAATTTGAGTGGTAATAGCTTTCTTGGGCCGTTCCCCACCGCCATTTTTGAGCTCACTCAGCTTACGACTCTTGATATTAGTCATAATATCTTCACCTCCACTTTCCCACCTGGGATTTCCAAGCTTAAGTTCTTGAACGTTTTCGATGCCTACAGTAACAACTTCACTGGTCCATTACCGCAAGAATTCGCACATCTCCGGTTCCTCGAATGGCTCAACCTCGGTGGAAGCTACTTTAATGGCAGTATTCCGGCGAGTTATGGCGGTTTGTCACGGTTGAAGTATTTGCATTTGGCTGGAAATGCTCTTGATGGTCAAATTCCAGGGCAATTAGCGTATTTAATCAAACTCGAGAGAATGGAAATCGGTTACAATACCTTCTCCGGCGGGATTCCGGCGGAATTTCCATTGTTGTTGAATCTGAAATACTTGGATATTGCCGGAGCGAATCTCGCCGGGACTCTGCCGCAGGACATTGGAAACATGACGAAGCTGCAAAATCTGCTTCTCTTCAAAAATCGAATCACCGGCGAAATTCCTGAAAGTTTAGGGAAATTAGAAGCGCTTGAGGAGCTTGATTTTTCGGAGAATCGACTAACCGGAACGATTCCGTCGGATTTGTATAATCTGAAGGAATTAAGAGAGCTGAGTTTGATGGCGAACGATCTGAGTGGGGAAATTCCACAAGCACTTGGCGATCTTCCAAATCTCGCCAGTTTGCGATTATGGAACAATTTGCTCACAGGTCCACTGCCTCAGAATCTCGGCTCGAACGAGAAGTTACTGCAAGTCGACGTGTCGTCGAATCAACTCTCCGGTCCGATTCCTCCAAATCTCTGCCATGGAAACAAGCTGTACAAGCTCATTCTGTTTTCCAACAAATTAGGGCACGAACTTCCCGCCTCTTTAACGAACTGCACGTCTCTCGTTCGTCTTCGAATCCAAAACAACTTCCTTAACGGCTCGATTCCTCACGGTTTCGGCATGTTGGAGAATCTGACATTCGCCGATTTCAGTAACAATAACTTCGCCGGCGAGATTCCGGCGGATTTTGGTAATGCGGTAAAGTTACAGTACTTGAACATTTCACAGAACGCCTTCGGAACTTCCTTACCGGAGAATATCTGGAACTCGACTAGCTTACAGATCTTCTCGGCGAGTTCTTCGAGAATCATCGGTAGCATCCCCGATTTCGTCGGGTGTAGATCTATCTACGAGATCGAACTCCAGGACAATAATTTAAACAGTAGTATTCCATGGACGTTCGGCCATTGCGAGAAGCTACTCACGCTGAATTTAAGCAGGAATTCGTTAACCGGCATTATTCCATGGGAGATTTCCACGCTGCCGTCGATTACCGCCATTGATCTGTCACGAAACTTCCTCACAGGTACAATCCCTTCAAATTTCCAAAACTGTAGCACAATCGAAAGCTTCGACGTATCATACAACCAGCTCACCGGCCCCATTCCATCGACCGGAACAATCTTCCCGGGATTACACTCTTCTTCATTCATCGGCAACGACGGTCTCTGCGGCGAGATTCTAGCAAAACCCTGCGCTGTCGACGCGCTCTCCGATGGCGGGATAGAGGTCCGACAGCAGCAGCCACGGCGGACGACGGGAGCAATCGTGTGGATAATGGCAGCGGCGTTTGGAATCGGACTGTTCGTATTAGTAGCCGGGACGAGATGTTTTCAGGCGAATTACAGCCGTCGATTCGGCGATGGCGACGAGGAAACGGGACCATGGAAACTAACCGCCTTTCAACGGTTGAACTTCACGGCGGAGGACGTGTTAGAGTGTATGTCAATGACGGATAAGATCCTGGGAATGGGGTCCACTGGGACGGTATATAAAGCGGAGATGCCAGGTGGCGAAATCATAGCGGTGAAGAAATTGTGGGGTAAATATAAAGAGAACATCCGACGGCGGAGAGGGGTTCTGGCGGAAGTGGAGGTACTGGGGAACGTGAGGCACAGGAACATAGTGAGATTGTTAGGGTGCTGCAGCAACAAGGAGTGTACGATGCTGCTCTACGAGTATATGCCAAATGGTAATTTGGACGATTTACTGCACGGTAAAAACAAGGGTGAAAATTTGGTGGCCGACTGGATAACTAGGTATAAAATTGCACTGGGTGTGGCACAGGGGATTTGTTATCTTCACCATGACTGTGATCCAGTCATCGTGCACCGCGATTTGAAGCCCAGTAATATTTTATTGGACGGTGAGATGGAGGCCCGAGTGGCGGATTTTGGCGTCGCTAAGTTGATCCAGACCGATGAGTCAATGTCGGTGATCGCTGGATCCTACGGCTACATTGCACCAGAATATGGCTACACGCTTCAAGTGGATGAAAAAAGTGATATTTATAGCTTTGGAGTTGTGTTGATGGAGATCGTGAGCGGGAAGAGGTCAGTGGATTCTGAATTTGGCGAGGGGAATAGCATTGTGGATTGGGTAAGATCCAAGATTAAGGTGAAAGATGGAGTGAATCAAGTTTTGGACAACGATGTCGGTGCGTCTTGTGCGTCTATTAGAGAAGAAATGATACAAATGCTTCGTATTTCATTGCTTTGTACGAGTCGTAACCCTGCAGACCGACCGTCGATGCGTGACGTTGTTTTGATGCTACAACAAACAAAACCCAAGAGAAAATTTACTGGGAACCTTGTCACTGTTGAAGCTACTGATCGCGCCACAAGCATTCGCACTCCAGTGGAAGAACAGAAGAGGGAAATACAAAGACCTTCCCGCCACAGAAACTTCATTCTCGTCCAGTTACAGAATAAGATTCCGCATATTTTCCCTTCTTCTCGCTTCAAAAATCTTCATTCTTCTTCACCAATACCGATCTTTACCCTTGCCCCTCCTCAAGGATCCGCAGAACCCCTAAAAAGCTTCAAAATGGCTGATTCCAGGGATCTTCCTCCTCGCCGCGGAGCAGGAATAGTCAAAAGTATACGGTTGGAGAACTTCATGTGTCACAGCAACTTGTATATTGAGTTTGGCGAGTGGCTCAATTTCATTACAGGGCAGAACGGAAGTGGTAAGAGTGCTATACTGACTGCTTTATGTGTTGCATTCGGCTGCCGAGCTAGAGGCACCCAAAGGGCGTCGACTTTGAAGGATTTTATTAAAACTGGTTGCAGTCATGCTGTCATCCAAGTTGAAATGGAAAATTCCGGGGAGGATGCTTTTAAGCCTGGAATATATGGTAATGTTATAATCATAGAGAGAAGGATTTCCGAAGCCTCAGGTGCCATTGTTTTGAAAGATTCTCAAGGAAAGAAGGTTTCCAGTCGGAGGGATGAACTACGAGAGCTTGTAGACCATTTTAATATAGATGTTGAGAACCCGTGTGTGATAATGAGTCAGGACAAAAGTAGAGAGTTCCTGCATTCTGGGAATGACAAAGACAAATTCAAGTTTTTCTTCAAAGCTACTCTTCTCCAGCAAGTTGATGATCTGTTGAAAAACATTTTTCATCAACTGAGATCTGCGAATGCACTTGTTGATGACTTGGAGTCTACCATACGACCTGTGGAGAAGGAGCTAAATGAGCTGCAAGGAAAAATTAAAAACATGGAGCACGTAGAGGAAATCTATCAACAAGTCCAACAGTTAAAGAAGAAGCTTGCGTGGTCATGGGTATATGATGTAGACAAACAGCTTCTGGAGCAAAGTGTAAAAATAGGAAAGCTCAAAGATCGCATTCCTATTTGTCGAGCAAAAATTGATCACCAACAGGGTCTGGCAGAAAAATTAAGAGAACGCTTTATCGAGAAGAAGGCTCAAATTGCAAGCATGATGGAGAAAACTTCGGAAGTTAGAAGACTGAAGGACGAATTGCAAGAAACCCTTTCCTTGGCAACAAGAGAGAAGCTCGGGCTTGAAGAGGAACATGGCCGCAAAATGAACTACATTCAAAAGATGGCAAAACGTGTTAGGCTGCTTGAGCAACAAGTTCACGATGTTCATGAGCAGCACATAAGAAATACACAGGCTGAAGAATCTGAAATTGAGGAAAAGTTGAAGGAACTCGAACTGGAGACTGAAGCTGCTAAGTCAACAGTCATGAGGTTAAAGGAGGAGGAAAATGGCTTACTGGATAGTCTAAACAGTGGGAGAAGTGAAATAAAAAAGATTGCTGAAGAGATTGAAGGTTATGAAAAAAAGCATAATGAATTTTCACGCTCTATTCGAGAGCTAAGGCAGCATCAAACAAACAAGGTTACAGCTTTTGGAGGTGATAGAGTCATTCAATTATTACGTGTGATTGAGAGGCAAAATCGAAGATTCAAGAAACCTCCCATTGGTCCAATTGGTGCCCATCTGAATTTGGTCAATGGTGACGTGTGGGCTCCTGCTGTTGAAAATGCCATTGGGAGGTTGCTCAATGCATTCATCGTGACTGATCATCGAGATTCTCTTCTTTTGAGAGGATGTGCAAATGAAGCTAATTATAGGCAACTCCCAATTATCATCTATGACTTTTCAAGACCACTGTTAGATATTCCAGCTCACATGCTTCCTCAAACAAAGCACCCTACAACCCTTTCAGTCATTCATTCTGAAAACCATACTGTCATCAATGTTTTGATAGATAAGGGTGATGCTGAGAGGCAAGTGCTTGTTAAAGATTATGATGTGGGTAAATCAGTCGCGTTTGACCAGCGGATCAAAAATCTCAAGGAGGTCTTTACATTAGATGGATATAAAATGTTTTCTCGTGGTTCTGTTCAAACAATTCTTCCCCCAGTTAAAAGACCTAGAAGTGGCAGACTTTGTAGTTCTTTTGATGACCAGATTAAAAGTCTTGAAAAAGATACATCGAACATGAAGGAAGAAGCTGAGCAATGTAGGAAGAGGAAGAGAGCTGCAGAAGAACAACTCCGGGGTCTTGAAGAGAACCTAAGCAATGCCAAGCGGAGATGTCAAAACGCGGAACGCATTTTAATGTCCAAAAATTTGGAGCTACAAGATTTACGGAAGTCACAGGTTGCTGGAACTAGTTCATTACCTTCATCAAACGTTGACGAGCTTCATCAAGAAATTTCTAAAATCAAAGAGGAGGTAGAAGAGAATAAATCGCTTCTGGAAAAGTTTAGAGTGAGAATGAAAGAAGCGGAAGCCAAGGCAAAAGATATTAAAGTATCATTTGAGAATCTGTGTGAGTCAGCGAAAGGAGAAGTTGATGCATATGAAGAAGCTGAGAGAGATATGTTGCAGATTGAACGAGATCTGCATTCCGCAGAAAAGGAGATGAATCATTATGAAGGTATTATGACTAACAAGGTCCTGTTTGATATCAAAGAGGCAGAGAGACAATATGAGGAGCTCGAGCGCCATCGCAAGGAGAGTTACAGTAAGGCTTCAATAATATCTCCTGAGAGTGAAATTGAGGCTTTAGGTGATTGGGATGGGAGCACACCTGAACAACTCAGTGCACAATTAAACAGGCTAAATCAGAGACTTAGTAACGAGACCCGACAATGTTCTGAATCTCTGGAAGACTTGAGGATGATGTATGAGAAAAAGGAGCGTACAATTATAAGAAAACAACAGACTTACAAAAGTTTTAGAGAGAAGTTGAATGCTTGCCAGAAAGCTCTTGAACTACGGTGGAACAAGTTTGAAAGGAATGCTAATCTTTTGAAGCGTCAACTGACTTGGCAATTTAATGGCCATTTAAGAAAAAAAGGGATCAGTGGACATATAAAAATCAATTACGAGGAAAAGACTCTCTCGGTTGAGGTGAAGATGCCCCAAGATGCATCCAGCAGTTCTGTTCGTGATACCCGTGGACTGTCAGGTGGAGAACGGTCATTTTCCACTCTATGCTTCACTTTGGCATTACACGAAATGACAGAAGCCCCATTTCGAGCAATGGATGAGTTTGATGTGTTTATGGATGCAGTAAGTCGGAAAATTAGCTTAGACACTCTTGTGGATTTTGCATTGTCACAAGGTTCCCAATGGATATTTATCACACCTCATGATATCGGCGTGGTAAAACAAGGTGAACGAATCAAGAAGCAGCAAATGGCAGCTCCTCGATCATGA 6414 44.12 MKTASSFLFLISAVLLIIVSFLLSATSSTPTVLPLQLLSLLSLKSSIKDSSSSFHDWDPKPTFSKADFHDPIWCSWSGVRCDQNSPEITSLDLSRRNLTGFIPSEIKYLTSLVYLNLSGNSFLGPFPTAIFELTQLTTLDISHNIFTSTFPPGISKLKFLNVFDAYSNNFTGPLPQEFAHLRFLEWLNLGGSYFNGSIPASYGGLSRLKYLHLAGNALDGQIPGQLAYLIKLERMEIGYNTFSGGIPAEFPLLLNLKYLDIAGANLAGTLPQDIGNMTKLQNLLLFKNRITGEIPESLGKLEALEELDFSENRLTGTIPSDLYNLKELRELSLMANDLSGEIPQALGDLPNLASLRLWNNLLTGPLPQNLGSNEKLLQVDVSSNQLSGPIPPNLCHGNKLYKLILFSNKLGHELPASLTNCTSLVRLRIQNNFLNGSIPHGFGMLENLTFADFSNNNFAGEIPADFGNAVKLQYLNISQNAFGTSLPENIWNSTSLQIFSASSSRIIGSIPDFVGCRSIYEIELQDNNLNSSIPWTFGHCEKLLTLNLSRNSLTGIIPWEISTLPSITAIDLSRNFLTGTIPSNFQNCSTIESFDVSYNQLTGPIPSTGTIFPGLHSSSFIGNDGLCGEILAKPCAVDALSDGGIEVRQQQPRRTTGAIVWIMAAAFGIGLFVLVAGTRCFQANYSRRFGDGDEETGPWKLTAFQRLNFTAEDVLECMSMTDKILGMGSTGTVYKAEMPGGEIIAVKKLWGKYKENIRRRRGVLAEVEVLGNVRHRNIVRLLGCCSNKECTMLLYEYMPNGNLDDLLHGKNKGENLVADWITRYKIALGVAQGICYLHHDCDPVIVHRDLKPSNILLDGEMEARVADFGVAKLIQTDESMSVIAGSYGYIAPEYGYTLQVDEKSDIYSFGVVLMEIVSGKRSVDSEFGEGNSIVDWVRSKIKVKDGVNQVLDNDVGASCASIREEMIQMLRISLLCTSRNPADRPSMRDVVLMLQQTKPKRKFTGNLVTVEATDRATSIRTPVEEQKREIQRPSRHRNFILVQLQNKIPHIFPSSRFKNLHSSSPIPIFTLAPPQGSAEPLKSFKMADSRDLPPRRGAGIVKSIRLENFMCHSNLYIEFGEWLNFITGQNGSGKSAILTALCVAFGCRARGTQRASTLKDFIKTGCSHAVIQVEMENSGEDAFKPGIYGNVIIIERRISEASGAIVLKDSQGKKVSSRRDELRELVDHFNIDVENPCVIMSQDKSREFLHSGNDKDKFKFFFKATLLQQVDDLLKNIFHQLRSANALVDDLESTIRPVEKELNELQGKIKNMEHVEEIYQQVQQLKKKLAWSWVYDVDKQLLEQSVKIGKLKDRIPICRAKIDHQQGLAEKLRERFIEKKAQIASMMEKTSEVRRLKDELQETLSLATREKLGLEEEHGRKMNYIQKMAKRVRLLEQQVHDVHEQHIRNTQAEESEIEEKLKELELETEAAKSTVMRLKEEENGLLDSLNSGRSEIKKIAEEIEGYEKKHNEFSRSIRELRQHQTNKVTAFGGDRVIQLLRVIERQNRRFKKPPIGPIGAHLNLVNGDVWAPAVENAIGRLLNAFIVTDHRDSLLLRGCANEANYRQLPIIIYDFSRPLLDIPAHMLPQTKHPTTLSVIHSENHTVINVLIDKGDAERQVLVKDYDVGKSVAFDQRIKNLKEVFTLDGYKMFSRGSVQTILPPVKRPRSGRLCSSFDDQIKSLEKDTSNMKEEAEQCRKRKRAAEEQLRGLEENLSNAKRRCQNAERILMSKNLELQDLRKSQVAGTSSLPSSNVDELHQEISKIKEEVEENKSLLEKFRVRMKEAEAKAKDIKVSFENLCESAKGEVDAYEEAERDMLQIERDLHSAEKEMNHYEGIMTNKVLFDIKEAERQYEELERHRKESYSKASIISPESEIEALGDWDGSTPEQLSAQLNRLNQRLSNETRQCSESLEDLRMMYEKKERTIIRKQQTYKSFREKLNACQKALELRWNKFERNANLLKRQLTWQFNGHLRKKGISGHIKINYEEKTLSVEVKMPQDASSSSVRDTRGLSGGERSFSTLCFTLALHEMTEAPFRAMDEFDVFMDAVSRKISLDTLVDFALSQGSQWIFITPHDIGVVKQGERIKKQQMAAPRS 2137
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1699886 1717501 - CmaCh04G003490.1 Cma04g00349 291430

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00349 2137 Pfam RecF/RecN/SMC N terminal domain 1101 2127 IPR003395 -
Cma04g00349 2137 Coils Coil 1369 1417 - -
Cma04g00349 2137 Coils Coil 1720 1782 - -
Cma04g00349 2137 Coils Coil 1489 1523 - -
Cma04g00349 2137 CDD ABC_SMC6_euk 1101 1253 - -
Cma04g00349 2137 SUPERFAMILY L domain-like 322 627 - -
Cma04g00349 2137 Coils Coil 1880 1907 - -
Cma04g00349 2137 Coils Coil 1795 1836 - -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 515 637 IPR032675 -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 294 396 IPR032675 -
Cma04g00349 2137 Coils Coil 1851 1878 - -
Cma04g00349 2137 Coils Coil 1447 1481 - -
Cma04g00349 2137 CDD ABC_SMC6_euk 2015 2137 - -
Cma04g00349 2137 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 6 1014 - -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 191 293 IPR032675 -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 397 514 IPR032675 -
Cma04g00349 2137 Pfam Leucine rich repeat 518 575 IPR001611 GO:0005515
Cma04g00349 2137 Pfam Leucine rich repeat 86 144 IPR001611 GO:0005515
Cma04g00349 2137 Pfam Leucine rich repeat 279 338 IPR001611 GO:0005515
Cma04g00349 2137 Gene3D - 1713 1882 - -
Cma04g00349 2137 ProSiteProfiles Protein kinase domain profile. 719 1004 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00349 2137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1100 1389 IPR027417 -
Cma04g00349 2137 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1102 2122 IPR027417 -
Cma04g00349 2137 SMART serkin_6 719 994 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00349 2137 Gene3D Transferase(Phosphotransferase) domain 1 798 1014 - -
Cma04g00349 2137 Gene3D - 1883 2132 IPR027417 -
Cma04g00349 2137 ProSitePatterns Protein kinases ATP-binding region signature. 725 748 IPR017441 GO:0005524
Cma04g00349 2137 Pfam Protein kinase domain 722 991 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00349 2137 Gene3D Phosphorylase Kinase; domain 1 696 797 - -
Cma04g00349 2137 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Cma04g00349 2137 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE TDR ISOFORM X3 6 1014 - -
Cma04g00349 2137 Coils Coil 1425 1445 - -
Cma04g00349 2137 Coils Coil 1288 1315 - -
Cma04g00349 2137 Gene3D - 1100 1347 IPR027417 -
Cma04g00349 2137 Pfam Leucine rich repeat N-terminal domain 36 82 IPR013210 -
Cma04g00349 2137 Coils Coil 1935 1973 - -
Cma04g00349 2137 SUPERFAMILY Protein kinase-like (PK-like) 722 995 IPR011009 -
Cma04g00349 2137 SUPERFAMILY L domain-like 66 408 - -
Cma04g00349 2137 SMART LRR_typ_2 133 157 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 349 373 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 205 229 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 301 325 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 564 587 IPR003591 -
Cma04g00349 2137 SMART LRR_typ_2 470 493 IPR003591 -
Cma04g00349 2137 Gene3D Ribonuclease Inhibitor 36 190 IPR032675 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00349 - - K22804 csv:101208493 1837.77
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g01717 Cma-Chr2:9672648 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma04g00349 Cma-Chr4:1699886 Cma04g00900 Cma-Chr4:4686817 0 dispersed
Cma05g01249 Cma-Chr5:9596734 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma12g01168 Cma-Chr12:9214663 Cma04g00349 Cma-Chr4:1699886 0 dispersed
Cma17g00970 Cma-Chr17:7195880 Cma04g00349 Cma-Chr4:1699886 3.76E-19 transposed
Cma16g00202 Cma-Chr16:912682 Cma04g00349 Cma-Chr4:1699886 0 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi16g370 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cma04g00349 . Car04g00322 . . . . . . . . . . . . . . . . . . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma17g00970 . 4 1044 Structural Maintenance of Chromosomes family AT5G15920 69.3 0.0e+00 1401.7
Cma04g00349 . 1098 2137 Structural Maintenance of Chromosomes family AT5G07660 62.9 0.0e+00 1242.6
Cma04g00349 . 1081 2137 Structural Maintenance of Chromosomes family AT5G61460 65.1 0.0e+00 1309.3
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010088 0 2 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 3 1 1 1 1 1 2 32
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
68461 PF02463 SMC_N 4.30E-23 CL0023 Cma PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00349 Cma_Chr04 FPKM 3.25784 3.657495 4.132602 4.936026 6.770731 6.579053 6.853732 1.684645 1.615256 1.494606