Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00355 ATGACCCAGATCCTCAATCTTGTTCTTGGAGTGGTTGCCATTGCAGCTGCGGCCATTATCATCTTCATCTTCTTGAAAAGAAGGGGAAAAGGGAAGGATGAATACAACGACACAGAGAGGAACCAGGAGAGGGGAAATGGGGAAGAGGAGAGAGAAGAATTGGTGAGTTTTCATGGCGGAGAGGATCTTACCATTGTTGATATATTGGAAGCTCCAGGGGAAGTGATTGGAAAAGCCAGCCATGGAACTCTGTATAAAGCCTACCTGCAAGGAAGCAGCACTGTGAGGCTGCTGAGGTTCCTCAGGCCACTTTGTACTGCTGGGTTTGAGGCTTTTGTTGCTCAGATCGAGTTCTTGGGCTCCATTAGGCACCGAAATTTAGTGCCTCTTTTGGGATTCTATTCAGGTCCAAGAACAGAGAAGCTCCTGATTCATCCATTTTACAGGCATGGGAATCTGGCTCAGTTCATTAGAGCGAAAGGATTGGATCATCTCCATACTGGTTTGCAAAAGCCAACAATCCATGGGAATCTACAGGCAAAGAATGTTCTTTTGGATCGAAACTACGAACCATTCGTGTCGGATTTCGGCCTACATTTGCTGTTGAATTCATCTTCTGCTCAAGAGTTGGTTGAAGCTTCAGCAGGCAATGGCTACAAAGCTCCTGAGCTGATCAAGATGAAGGATGCAAATGAGAAGAGCGATATCTATAGCTACGGCGTAATCTTATTTGAGTTACTGTCGGGGAAGGAACCGATCGACAAAAAGGCGAGTCCTGAGCCAAGCATAGAGCAGCAGAAGCAATTGATCAACAAATGCAAGAACAAAGATAAAAAAGAAGAAGTTGAAATGGAAAGGAAAAGAGATGGAACGCAGATGAAGAAAGGGCGTTGGAGTGTTGAAGAAGATGAGGTTCTGATGAACTATGTCAACGAGTTTGGTCCAAGAGACTGGAGCTCCCTTCGATCCAAAAGACTTCTCCCTAGGACTGGAAAATCCTGCCGTCTCCGTTGGGTTAATAAACTTCAACCCAACTTGAAGACAGGATGCAAGTTTTCAGCAGATGAGGAGAGGTTGGTAACAGAATTACAGGCACAGTTCGGGAATAAATGGGCGAAAATCGCTACGTATTTTCCGGGAAGGACGGATAATGATGTGAAGAATTTCTGGAGTACAAGGAGGAAAAGTTTGGGACGACGGATTTTGCAAACCCCACCACAGAAATCTCAGAAACATAACCAGAAAATTTCAGAATCTCAAAGACTTCATCATGTATTGCCTGATTTAGAGGTTCCTACCTCCGTTTCCTCTCAGCTGGAGAAACGATCATCAACCTGGAACGATCATGTCGAGAAAGAATTCGAGTTAGGAAACACAGAGATGCATAAAATGGCATTGTTATCAGTACAGTCAAATATGATAGCTATGGAAACTGAGAATCAAATATTTGGAACTCCATCCGTACACATGCTAGCACCCTTTGACCCTTTTCCTCATTGTTGCATCTCCCAAATCACCCAATCCTCACAAGAGATCGGGATGGTTCCAGACTGCCTCGGACTGTCGCCACACCACATTGCTTCCAATTTGCAAGACGGGCTTGAGCCAGGCTAG 1614 44.92 MTQILNLVLGVVAIAAAAIIIFIFLKRRGKGKDEYNDTERNQERGNGEEEREELVSFHGGEDLTIVDILEAPGEVIGKASHGTLYKAYLQGSSTVRLLRFLRPLCTAGFEAFVAQIEFLGSIRHRNLVPLLGFYSGPRTEKLLIHPFYRHGNLAQFIRAKGLDHLHTGLQKPTIHGNLQAKNVLLDRNYEPFVSDFGLHLLLNSSSAQELVEASAGNGYKAPELIKMKDANEKSDIYSYGVILFELLSGKEPIDKKASPEPSIEQQKQLINKCKNKDKKEEVEMERKRDGTQMKKGRWSVEEDEVLMNYVNEFGPRDWSSLRSKRLLPRTGKSCRLRWVNKLQPNLKTGCKFSADEERLVTELQAQFGNKWAKIATYFPGRTDNDVKNFWSTRRKSLGRRILQTPPQKSQKHNQKISESQRLHHVLPDLEVPTSVSSQLEKRSSTWNDHVEKEFELGNTEMHKMALLSVQSNMIAMETENQIFGTPSVHMLAPFDPFPHCCISQITQSSQEIGMVPDCLGLSPHHIASNLQDGLEPG 537
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1742282 1745806 - CmaCh04G003550.1 Cma04g00355 291436
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00355 537 CDD SANT 297 342 IPR001005 -
Cma04g00355 537 ProSiteProfiles Protein kinase domain profile. 70 426 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cma04g00355 537 SMART sant 348 396 IPR001005 -
Cma04g00355 537 SMART sant 294 344 IPR001005 -
Cma04g00355 537 SUPERFAMILY Homeodomain-like 293 390 IPR009057 -
Cma04g00355 537 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 159 260 - -
Cma04g00355 537 Gene3D Transferase(Phosphotransferase) domain 1 151 291 - -
Cma04g00355 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 294 346 IPR017930 -
Cma04g00355 537 Gene3D - 350 424 - -
Cma04g00355 537 SUPERFAMILY Protein kinase-like (PK-like) 73 275 IPR011009 -
Cma04g00355 537 CDD SANT 351 390 IPR001005 -
Cma04g00355 537 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 159 260 - -
Cma04g00355 537 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE IMK3-RELATED 4 159 - -
Cma04g00355 537 MobiDBLite consensus disorder prediction 274 295 - -
Cma04g00355 537 ProSiteProfiles Myb-like domain profile. 351 394 IPR001005 -
Cma04g00355 537 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 347 398 IPR017930 -
Cma04g00355 537 Gene3D - 292 348 - -
Cma04g00355 537 ProSiteProfiles Myb-like domain profile. 290 342 IPR001005 -
Cma04g00355 537 Pfam Myb-like DNA-binding domain 295 340 IPR001005 -
Cma04g00355 537 Pfam Myb-like DNA-binding domain 351 391 IPR001005 -
Cma04g00355 537 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 4 159 - -
Cma04g00355 537 Pfam Protein tyrosine and serine/threonine kinase 74 265 IPR001245 GO:0004672|GO:0006468
Cma04g00355 537 Gene3D Phosphorylase Kinase; domain 1 70 147 - -
       

Event-related genes

Select Gene_1 Gene_2 Event_name
Cma04g00355 Cma15g01355 CCT
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma02g00977 Cma-Chr2:5836545 Cma04g00355 Cma-Chr4:1742282 2.40E-28 dispersed
Cma04g00355 Cma-Chr4:1742282 Cma16g00213 Cma-Chr16:967058 1.29E-143 dispersed
Cma16g00210 Cma-Chr16:955470 Cma04g00355 Cma-Chr4:1742282 7.93E-135 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34759 PF07714 PK_Tyr_Ser-Thr 4.60E-22 CL0016 Cma TF
68462 PF07714 PK_Tyr_Ser-Thr 4.60E-22 CL0016 Cma PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00355 - K09422 csv:101214818 391.734