Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00385 ATGGCATCCGATCATCAGCAGCCAGCTCTTTCTTCCTTTGGAAAGGTAGGACAATCATCTGGTGAGATTGACGATGTCGAGGAACCTTTAGTTTCTGTTGAATTTAAGAACTCGGAGAATTATTCTGCCACAGCTGCAATATTACCGAAATTTGTTTTCTGTAACTTAGAAGACGCTGTGTATGGATGCCTATCAAAATGGAAATGCTTGATGGAATTGCAGAATAGATTTCTATTTCCTGCTCTTGGAGGACTACTTTATGGGTATGATATTGGTGCAACATCTTGTGCAACAATTTGCTTACAGTCAGCATCATCCAGTGGAATATCATGGTACCACTTATCTTCTGTAGAAGTTGGCCTTGTAACTAGCGGTTCCTTATATGGTGCCTTGATTGGCTCTATCTTGGCATTTAACGTTGCTGATTTTCTAGGGAGAAGAAGGGAGCTGATTCTTTCTGCTTTAATGTATCTCGTCGGAGCTATCATAACAGCACTTGCTCCTAACTTTGCTGTTTTGGCGATGCATGCAGCACCAATGTACATTGCTGAAACTTCCCCTAGCAAGATACGTGGGCAGTTAATCTCTCTCAAAGAGTTTTTTATAGTGCTTGGAATGGTTGTGGGTTACAGCATTGGTAGTCTTTTAGTTGAAGTGGTTGCTGGTTGGCGCTACATATATGCAGCCAACACCCCAATTGCGTTGGTCATGGGAGTGGGAATGTGGTGGCTACCGTCATCTCCCAGGTGGCTACTTTTATGTGCTATACAGGGAAAAGGAAATATGCAGGAATTGAAAGAGAGTGCTATAAGCTGCTTGTACCGGCTACGGGGTGCAGTTATTGGCGATAAAGCTTCTGAAGAAGTGGATGAAATTTTGGATGAGCTCTCTTTTCTTGGTGAATCAGAGACGGCAACGATAGGGGAAATATTTCAGGGGAAGTGCTTGAAGGCCCTAATAATTGGTGCAGGATTAGTATTATTTCAACAGATAACTGGTCAACCAAGTGTGCTATATTATGCTCCCTCAATCTTTCAGCTTTTTATGACTGGAGCAGCTGTTCTTGCCGTTGATAGACTTGGGAGGAGGCCTTTACTCCTTGGAGGTGTATCTGGGATTGTGGTTTCTTTGTTTCTTCTGGGATCGTATTACCTTTTCTTGGGTAATGTGCCTGCTGTTGCTGTAGTCGCGCTCTTGTCATATGTTGGTAGTTACCAGCTATCTTTTGGTCCCATTGGTTGGTTAATGATTTCAGAGGTTTTCCCTTTGCGACTGAGAGGTCGGGGGCTCAGTATAGCAGTGCTTGTGAATTTTGGAGCAAATGCTCTCGTTGCATTTGCCTTTTCTCCATTAAAGCTTGGACTTCCAGGGCTCATGGGCACACGAACCCAGCAACCCTGCCATGACGACGACGACGACGACCTCCCAGGCGGCCCTGGCCCTGCTGCCACCACAATTTCAGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAACCGAAGCGAGCAAACCATGGCGACGCCTGCTAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGATGAGGCGGGCTCGCAACCACCTACTGCTAACGTGAAGAAAAAGAGGGGCCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTAGCAGACGAACTCGTTGCAGAGTTTTCTGATCCTGGCAACAGTCTTGCGACACCGGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTGTATGACGCACTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTTCCACGTACAAGTCTGAACGATATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCGGCGTACTTGCAAGAGCTGGAGGAGCAGCTAATGGTGTCTGGCTATCAGTATGTAGGCCTTCAGAACCTAATTCAGCGAAACGAACAGTTATTCAGTTCTGAGAATGCACCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACAAGGCCCCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCACTTTGACTTCAACAGTACTCCGTTTGAGCTCCACGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGCGACAACACGGCGCAAAATTTCGCTCCTGATGCAGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTTCGATGTCTAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATAAAAGCTCGTGTTAAACACGAACATTGA 2445 46.05 MASDHQQPALSSFGKVGQSSGEIDDVEEPLVSVEFKNSENYSATAAILPKFVFCNLEDAVYGCLSKWKCLMELQNRFLFPALGGLLYGYDIGATSCATICLQSASSSGISWYHLSSVEVGLVTSGSLYGALIGSILAFNVADFLGRRRELILSALMYLVGAIITALAPNFAVLAMHAAPMYIAETSPSKIRGQLISLKEFFIVLGMVVGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQGKGNMQELKESAISCLYRLRGAVIGDKASEEVDEILDELSFLGESETATIGEIFQGKCLKALIIGAGLVLFQQITGQPSVLYYAPSIFQLFMTGAAVLAVDRLGRRPLLLGGVSGIVVSLFLLGSYYLFLGNVPAVAVVALLSYVGSYQLSFGPIGWLMISEVFPLRLRGRGLSIAVLVNFGANALVAFAFSPLKLGLPGLMGTRTQQPCHDDDDDDLPGGPGPAATTISGQSVSMSGSVGSPSNRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQLMVSGYQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFAPDAGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1931497 1945371 - CmaCh04G003850.1 Cma04g00385 291466
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00385 814 ProSitePatterns Sugar transport proteins signature 1. 353 369 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cma04g00385 814 CDD DP_DD 640 750 IPR014889 -
Cma04g00385 814 MobiDBLite consensus disorder prediction 483 510 - -
Cma04g00385 814 Gene3D Transcription factor DP 641 776 IPR038168 -
Cma04g00385 814 SUPERFAMILY MFS general substrate transporter 77 451 IPR036259 -
Cma04g00385 814 Gene3D MFS general substrate transporter like domains 67 461 IPR036259 -
Cma04g00385 814 MobiDBLite consensus disorder prediction 1 18 - -
Cma04g00385 814 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 76 453 - -
Cma04g00385 814 SMART DP_2 642 812 IPR014889 -
Cma04g00385 814 PRINTS Sugar transporter signature 418 430 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cma04g00385 814 PRINTS Sugar transporter signature 84 94 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cma04g00385 814 PRINTS Sugar transporter signature 395 416 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cma04g00385 814 MobiDBLite consensus disorder prediction 1 21 - -
Cma04g00385 814 Pfam E2F/DP family winged-helix DNA-binding domain 555 635 IPR003316 GO:0005667|GO:0006355
Cma04g00385 814 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 76 453 - -
Cma04g00385 814 ProSitePatterns Sugar transport proteins signature 1. 137 154 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cma04g00385 814 MobiDBLite consensus disorder prediction 525 555 - -
Cma04g00385 814 Pfam Transcription factor DP 643 757 IPR014889 -
Cma04g00385 814 SUPERFAMILY Winged helix DNA-binding domain 555 636 IPR036390 -
Cma04g00385 814 MobiDBLite consensus disorder prediction 462 510 - -
Cma04g00385 814 Gene3D - 548 640 IPR036388 -
Cma04g00385 814 CDD MFS_GLUT10_12_Class3_like 79 458 - -
Cma04g00385 814 SMART E2F_TDP_2 552 635 IPR003316 GO:0005667|GO:0006355
Cma04g00385 814 SUPERFAMILY E2F-DP heterodimerization region 641 768 IPR037241 -
Cma04g00385 814 Coils Coil 651 671 - -
Cma04g00385 814 Pfam Sugar (and other) transporter 79 451 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cma04g00385 814 ProSiteProfiles Major facilitator superfamily (MFS) profile. 76 507 IPR020846 GO:0022857
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00385 Cma-Chr4:1931497 Cma11g01258 Cma-Chr11:8437174 3.12E-38 dispersed
Cma01g00622 Cma-Chr1:3245711 Cma04g00385 Cma-Chr4:1931497 4.72E-149 transposed
Cma16g00244 Cma-Chr16:1132397 Cma04g00385 Cma-Chr4:1931497 0 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34763 PF00083 Sugar_tr 7.50E-58 CL0015 Cma TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00385 - - csv:101216633 694.115