Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cma04g00385 ATGGCATCCGATCATCAGCAGCCAGCTCTTTCTTCCTTTGGAAAGGTAGGACAATCATCTGGTGAGATTGACGATGTCGAGGAACCTTTAGTTTCTGTTGAATTTAAGAACTCGGAGAATTATTCTGCCACAGCTGCAATATTACCGAAATTTGTTTTCTGTAACTTAGAAGACGCTGTGTATGGATGCCTATCAAAATGGAAATGCTTGATGGAATTGCAGAATAGATTTCTATTTCCTGCTCTTGGAGGACTACTTTATGGGTATGATATTGGTGCAACATCTTGTGCAACAATTTGCTTACAGTCAGCATCATCCAGTGGAATATCATGGTACCACTTATCTTCTGTAGAAGTTGGCCTTGTAACTAGCGGTTCCTTATATGGTGCCTTGATTGGCTCTATCTTGGCATTTAACGTTGCTGATTTTCTAGGGAGAAGAAGGGAGCTGATTCTTTCTGCTTTAATGTATCTCGTCGGAGCTATCATAACAGCACTTGCTCCTAACTTTGCTGTTTTGGCGATGCATGCAGCACCAATGTACATTGCTGAAACTTCCCCTAGCAAGATACGTGGGCAGTTAATCTCTCTCAAAGAGTTTTTTATAGTGCTTGGAATGGTTGTGGGTTACAGCATTGGTAGTCTTTTAGTTGAAGTGGTTGCTGGTTGGCGCTACATATATGCAGCCAACACCCCAATTGCGTTGGTCATGGGAGTGGGAATGTGGTGGCTACCGTCATCTCCCAGGTGGCTACTTTTATGTGCTATACAGGGAAAAGGAAATATGCAGGAATTGAAAGAGAGTGCTATAAGCTGCTTGTACCGGCTACGGGGTGCAGTTATTGGCGATAAAGCTTCTGAAGAAGTGGATGAAATTTTGGATGAGCTCTCTTTTCTTGGTGAATCAGAGACGGCAACGATAGGGGAAATATTTCAGGGGAAGTGCTTGAAGGCCCTAATAATTGGTGCAGGATTAGTATTATTTCAACAGATAACTGGTCAACCAAGTGTGCTATATTATGCTCCCTCAATCTTTCAGCTTTTTATGACTGGAGCAGCTGTTCTTGCCGTTGATAGACTTGGGAGGAGGCCTTTACTCCTTGGAGGTGTATCTGGGATTGTGGTTTCTTTGTTTCTTCTGGGATCGTATTACCTTTTCTTGGGTAATGTGCCTGCTGTTGCTGTAGTCGCGCTCTTGTCATATGTTGGTAGTTACCAGCTATCTTTTGGTCCCATTGGTTGGTTAATGATTTCAGAGGTTTTCCCTTTGCGACTGAGAGGTCGGGGGCTCAGTATAGCAGTGCTTGTGAATTTTGGAGCAAATGCTCTCGTTGCATTTGCCTTTTCTCCATTAAAGCTTGGACTTCCAGGGCTCATGGGCACACGAACCCAGCAACCCTGCCATGACGACGACGACGACGACCTCCCAGGCGGCCCTGGCCCTGCTGCCACCACAATTTCAGGTCAGTCCGTTTCCATGAGTGGCAGTGTCGGTTCTCCTTCTAACCGAAGCGAGCAAACCATGGCGACGCCTGCTAGCGACAACACTTTTCTTCGATTGAACAACCTCGACATCCATGGCGATGAGGCGGGCTCGCAACCACCTACTGCTAACGTGAAGAAAAAGAGGGGCCAGCGTGCTGTTGGAGGGGACAAGAGTGGAAGAGGGCTTCGCCAATTTAGCATGAAAGTTTGTGAGAAAGTGGAGAGTAAGGGAAGAACGACCTACAACGAGGTAGCAGACGAACTCGTTGCAGAGTTTTCTGATCCTGGCAACAGTCTTGCGACACCGGATCAGCAACAGTACGATGAAAAAAACATCAGGCGAAGGGTGTATGACGCACTGAATGTTCTCATGGCAATGGATATCATATCAAAAGATAAAAAAGAGATACAATGGAAGGGTCTTCCACGTACAAGTCTGAACGATATCGAAGAACTAAAGGCAGAGCGTCTTGGACTTAGAAATAGGATTGAAAAGAAAGCGGCGTACTTGCAAGAGCTGGAGGAGCAGCTAATGGTGTCTGGCTATCAGTATGTAGGCCTTCAGAACCTAATTCAGCGAAACGAACAGTTATTCAGTTCTGAGAATGCACCCAGTGGTGGCGTGTCTTTACCTTTCATCCTGGTGCAGACAAGGCCCCATGCAACTGTTGAGATAGAAATTTCAGAAGATATGCAGCTGGTGCACTTTGACTTCAACAGTACTCCGTTTGAGCTCCACGACGACAATTACGTTTTGAAGGCGATGAAATTTTGCGACAGACCGCAATGCGACAACACGGCGCAAAATTTCGCTCCTGATGCAGGGGAGGGTTCTAGCATGTCAGGCATGTATCAACCACCCCAGATCCCTCTTCCTTCGATGTCTAACACGCCCGTTAGAACTCCAACCTCGCCACCACTTCCTGGAATTATAAAAGCTCGTGTTAAACACGAACATTGA 2445 46.05 MASDHQQPALSSFGKVGQSSGEIDDVEEPLVSVEFKNSENYSATAAILPKFVFCNLEDAVYGCLSKWKCLMELQNRFLFPALGGLLYGYDIGATSCATICLQSASSSGISWYHLSSVEVGLVTSGSLYGALIGSILAFNVADFLGRRRELILSALMYLVGAIITALAPNFAVLAMHAAPMYIAETSPSKIRGQLISLKEFFIVLGMVVGYSIGSLLVEVVAGWRYIYAANTPIALVMGVGMWWLPSSPRWLLLCAIQGKGNMQELKESAISCLYRLRGAVIGDKASEEVDEILDELSFLGESETATIGEIFQGKCLKALIIGAGLVLFQQITGQPSVLYYAPSIFQLFMTGAAVLAVDRLGRRPLLLGGVSGIVVSLFLLGSYYLFLGNVPAVAVVALLSYVGSYQLSFGPIGWLMISEVFPLRLRGRGLSIAVLVNFGANALVAFAFSPLKLGLPGLMGTRTQQPCHDDDDDDLPGGPGPAATTISGQSVSMSGSVGSPSNRSEQTMATPASDNTFLRLNNLDIHGDEAGSQPPTANVKKKRGQRAVGGDKSGRGLRQFSMKVCEKVESKGRTTYNEVADELVAEFSDPGNSLATPDQQQYDEKNIRRRVYDALNVLMAMDIISKDKKEIQWKGLPRTSLNDIEELKAERLGLRNRIEKKAAYLQELEEQLMVSGYQYVGLQNLIQRNEQLFSSENAPSGGVSLPFILVQTRPHATVEIEISEDMQLVHFDFNSTPFELHDDNYVLKAMKFCDRPQCDNTAQNFAPDAGEGSSMSGMYQPPQIPLPSMSNTPVRTPTSPPLPGIIKARVKHEH 814
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
4 1931497 1945371 - CmaCh04G003850.1 Cma04g00385 291466

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cma04g00385 814 ProSitePatterns Sugar transport proteins signature 1. 353 369 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cma04g00385 814 CDD DP_DD 640 750 IPR014889 -
Cma04g00385 814 MobiDBLite consensus disorder prediction 483 510 - -
Cma04g00385 814 Gene3D Transcription factor DP 641 776 IPR038168 -
Cma04g00385 814 SUPERFAMILY MFS general substrate transporter 77 451 IPR036259 -
Cma04g00385 814 Gene3D MFS general substrate transporter like domains 67 461 IPR036259 -
Cma04g00385 814 MobiDBLite consensus disorder prediction 1 18 - -
Cma04g00385 814 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 1 76 453 - -
Cma04g00385 814 SMART DP_2 642 812 IPR014889 -
Cma04g00385 814 PRINTS Sugar transporter signature 418 430 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cma04g00385 814 PRINTS Sugar transporter signature 84 94 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cma04g00385 814 PRINTS Sugar transporter signature 395 416 IPR003663 GO:0016020|GO:0022857|GO:0055085
Cma04g00385 814 MobiDBLite consensus disorder prediction 1 21 - -
Cma04g00385 814 Pfam E2F/DP family winged-helix DNA-binding domain 555 635 IPR003316 GO:0005667|GO:0006355
Cma04g00385 814 PANTHER D-XYLOSE-PROTON SYMPORTER-LIKE 2 76 453 - -
Cma04g00385 814 ProSitePatterns Sugar transport proteins signature 1. 137 154 IPR005829 GO:0016021|GO:0022857|GO:0055085
Cma04g00385 814 MobiDBLite consensus disorder prediction 525 555 - -
Cma04g00385 814 Pfam Transcription factor DP 643 757 IPR014889 -
Cma04g00385 814 SUPERFAMILY Winged helix DNA-binding domain 555 636 IPR036390 -
Cma04g00385 814 MobiDBLite consensus disorder prediction 462 510 - -
Cma04g00385 814 Gene3D - 548 640 IPR036388 -
Cma04g00385 814 CDD MFS_GLUT10_12_Class3_like 79 458 - -
Cma04g00385 814 SMART E2F_TDP_2 552 635 IPR003316 GO:0005667|GO:0006355
Cma04g00385 814 SUPERFAMILY E2F-DP heterodimerization region 641 768 IPR037241 -
Cma04g00385 814 Coils Coil 651 671 - -
Cma04g00385 814 Pfam Sugar (and other) transporter 79 451 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cma04g00385 814 ProSiteProfiles Major facilitator superfamily (MFS) profile. 76 507 IPR020846 GO:0022857
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cma04g00385 - - - csv:101216633 694.115
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cma04g00385 Cma-Chr4:1931497 Cma11g01258 Cma-Chr11:8437174 3.12E-38 dispersed
Cma01g00622 Cma-Chr1:3245711 Cma04g00385 Cma-Chr4:1931497 4.72E-149 transposed
Cma16g00244 Cma-Chr16:1132397 Cma04g00385 Cma-Chr4:1931497 0 wgd
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma16g00244 . 81 284 E2F-DP Transcription Factor Family AT5G02470 54.6 9.6e-59 224.6
Cma04g00385 . 541 751 E2F-DP Transcription Factor Family AT5G02470 52.8 1.8e-57 220.3
Cma20g00153 CST 10 463 E2F-DP Transcription Factor Family AT5G22220 56.0 8.8e-115 411.4
Cma03g01126 . 50 446 E2F-DP Transcription Factor Family AT5G22220 50.8 2.6e-90 330.1
Cma02g01309 CST 24 257 E2F-DP Transcription Factor Family AT5G22220 60.6 3.3e-61 233.4
Cma20g00153 CST 21 441 E2F-DP Transcription Factor Family AT2G36010 55.8 5.9e-122 435.3
Cma03g01126 . 11 421 E2F-DP Transcription Factor Family AT2G36010 53.1 1.0e-110 397.9
Cma02g01309 CST 21 257 E2F-DP Transcription Factor Family AT2G36010 54.5 2.9e-60 230.3
Cma05g00301 CST 155 410 E2F-DP Transcription Factor Family AT1G47870 53.7 6.4e-66 248.8
Cma12g00412 CST 153 408 E2F-DP Transcription Factor Family AT1G47870 53.1 3.2e-65 246.5
Cma20g00153 CST 139 415 E2F-DP Transcription Factor Family AT1G47870 51.3 5.1e-63 239.2
Cma18g00144 CCT,CST 17 392 E2F-DP Transcription Factor Family AT3G48160 55.1 7.9e-104 374.8
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004186 1 2 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 3 1 1 1 1 1 1 1 1 3 3 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
34763 PF00083 Sugar_tr 7.50E-58 CL0015 Cma TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cma04g00385 Cma_Chr04 FPKM 29.991041 33.884556 17.303967 16.989368 17.935425 18.978788 18.786398 24.124559 25.057331 25.803284